Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold438G51636 Striga asiatica HOM05D007256 ORTHO05D009109 8.8e-80 300.1 135 100.0
MSTRG.20366 Avicennia marina HOM05D007256 ORTHO05D009109 2.1e-57 225.7 159 66.0
Migut.B00859 Erythranthe guttata HOM05D007256 ORTHO05D009109 6.8e-56 220.7 152 66.4
Oeu060662.1 Olea europaea HOM05D007256 ORTHO05D009109 1.7e-54 216.1 163 62.0
SalBow7G1589 Salvia bowleyana HOM05D007256 ORTHO05D009109 3.7e-54 214.9 178 59.6
CAN.G1374.8 Capsicum annuum HOM05D007256 ORTHO05D009109 1.4e-48 196.4 135 65.2
PGSC0003DMG400002748 Solanum tuberosum HOM05D007256 ORTHO05D009109 5.2e-48 194.5 135 65.2
Nitab4.5_0005710g0050 Nicotiana tabacum HOM05D007256 ORTHO05D009109 1.5e-47 193.0 135 65.9
Hma1.2p1_0052F.1_g030520 Hydrangea macrophylla HOM05D007256 ORTHO05D009109 3.4e-47 191.8 138 62.3
Cfa006739 Carpinus fangiana HOM05D007256 ORTHO05D009109 1.9e-45 186.0 135 64.4
CiPaw.07G034000 Carya illinoinensis HOM05D007256 ORTHO05D009109 3.2e-45 185.3 135 63.0
Nitab4.5_0002783g0030 Nicotiana tabacum HOM05D007256 ORTHO05D009109 4.1e-45 184.9 154 56.5
unitig_699.g19800 Utricularia gibba HOM05D007256 ORTHO05D009109 5.4e-45 184.5 178 52.8
Solyc01g100990.3 Solanum lycopersicum HOM05D007256 ORTHO05D009109 9.2e-45 183.7 156 56.4
Sopen01g044450 Solanum pennellii HOM05D007256 ORTHO05D009109 1.6e-44 183.0 156 56.4
GSVIVG01031300001 Vitis vinifera HOM05D007256 ORTHO05D009109 3.5e-44 181.8 159 56.0
Cc02_g35540 Coffea canephora HOM05D007256 ORTHO05D009109 7.8e-44 180.6 141 61.0
Duzib177G1002 Durio zibethinus HOM05D007256 ORTHO05D009109 1.3e-43 179.9 143 59.4
Lsat_1_v5_gn_2_17440 Lactuca sativa HOM05D007256 ORTHO05D009109 1.7e-43 179.5 149 57.7
Peaxi162Scf00357g00431 Petunia axillaris HOM05D007256 ORTHO05D009109 1.7e-43 179.5 155 55.5
Nn4g25434 Nelumbo nucifera HOM05D007256 ORTHO05D009109 2.3e-43 179.1 153 57.5
TAR362G0938 Trochodendron aralioides HOM05D007256 ORTHO05D009109 3.0e-43 178.7 158 55.1
Prupe.6G307100 Prunus persica HOM05D007256 ORTHO05D009109 1.1e-42 176.8 157 55.4
Haze_04019 Corylus avellana HOM05D007256 ORTHO05D009109 2.5e-42 175.6 157 56.1
Thecc.05G327400 Theobroma cacao HOM05D007256 ORTHO05D009109 7.3e-42 174.1 138 58.7
Duzib177G0019 Durio zibethinus HOM05D007256 ORTHO05D009109 2.8e-41 172.2 164 51.8
HanXRQChr14g0433581 Helianthus annuus HOM05D007256 ORTHO05D009109 3.6e-41 171.8 150 57.3
CANSAT54G0501 Cannabis sativa HOM05D007256 ORTHO05D009109 8.1e-41 170.6 158 55.7
COL.COLO4_05498 Corchorus olitorius HOM05D007256 ORTHO05D009109 8.1e-41 170.6 135 59.3
Gohir.A13G030200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 8.1e-41 170.6 139 59.0
Zm00001eb333750 Zea mays HOM05D007256 ORTHO05D009109 1.1e-40 170.2 167 50.9
TWI12G0874 Tripterygium wilfordii HOM05D007256 ORTHO05D009109 2.3e-40 169.1 158 52.5
RcHm_v2.0_Chr3g0458031 Rosa chinensis HOM05D007256 ORTHO05D009109 3.1e-40 168.7 157 52.2
FvH4_6g08160 Fragaria vesca HOM05D007256 ORTHO05D009109 4.0e-40 168.3 145 55.2
QL03p009011 Quercus lobata HOM05D007256 ORTHO05D009109 8.9e-40 167.2 157 52.9
Gohir.D13G028200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 1.2e-39 166.8 142 57.7
Gorai.013G032200 Gossypium raimondii HOM05D007256 ORTHO05D009109 1.2e-39 166.8 142 57.7
AUR62006795 Chenopodium quinoa HOM05D007256 ORTHO05D009109 1.5e-39 166.4 150 54.7
CsaV3_1G037970 Cucumis sativus L. HOM05D007256 ORTHO05D009109 1.5e-39 166.4 161 48.4
ECA238G0534 Erigeron canadensis HOM05D007256 ORTHO05D009109 1.5e-39 166.4 159 52.2
Eucgr.B01795 Eucalyptus grandis HOM05D007256 ORTHO05D009109 1.5e-39 166.4 156 53.8
FAN09G0386 Fragaria x ananassa HOM05D007256 ORTHO05D009109 1.5e-39 166.4 157 52.2
PSO761G0366 Papaver somniferum HOM05D007256 ORTHO05D009109 1.5e-39 166.4 160 54.4
QL03p009202 Quercus lobata HOM05D007256 ORTHO05D009109 1.5e-39 166.4 157 52.2
Aqoxy2G02591 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 2.0e-39 166.0 140 57.1
Os01g0252200 Oryza sativa ssp. japonica HOM05D007256 ORTHO05D009109 2.0e-39 166.0 170 50.6
PSO210G0513 Papaver somniferum HOM05D007256 ORTHO05D009109 5.8e-39 164.5 160 51.2
FAN14G3866 Fragaria x ananassa HOM05D007256 ORTHO05D009109 1.3e-38 163.3 150 52.7
EL10Ac4g09530 Beta vulgaris HOM05D007256 ORTHO05D009109 1.7e-38 162.9 135 57.8
FAN02G0906 Fragaria x ananassa HOM05D007256 ORTHO05D009109 1.7e-38 162.9 157 51.6
ClCG03G017800 Citrullus lanatus HOM05D007256 ORTHO05D009109 2.2e-38 162.5 160 51.2
Manes.08G108700 Manihot esculenta HOM05D007256 ORTHO05D009109 2.2e-38 162.5 159 50.3
Potri.013G004801 Populus trichocarpa HOM05D007256 ORTHO05D009109 2.2e-38 162.5 153 52.9
Ciclev10012993m.g Citrus clementina HOM05D007256 ORTHO05D009109 6.4e-38 161.0 164 52.4
DCAR_002110 Daucus carota HOM05D007256 ORTHO05D009109 7.1e-37 157.5 154 52.6
MELO3C015247.2 Cucumis melo HOM05D000487 ORTHO05D000405 2.7e-36 155.6 157 47.8
Sabra13G0003900 Salix brachista HOM05D007256 ORTHO05D009109 3.5e-36 155.2 153 51.6
QL03p009259 Quercus lobata HOM05D007256 ORTHO05D009109 7.8e-36 154.1 157 51.0
CDE08G0276 Ceratophyllum demersum HOM05D007256 ORTHO05D009109 2.3e-35 152.5 136 54.4
MD12G1202300 Malus domestica HOM05D007256 ORTHO05D009109 3.9e-35 151.8 151 49.0
Lj5g0000046 Lotus japonicus HOM05D007256 ORTHO05D009109 6.6e-35 151.0 140 52.1
Lalb_Chr02g0147641 Lupinus albus HOM05D007256 ORTHO05D009109 8.6e-35 150.6 131 51.1
Sed0013353 Sechium edule HOM05D007256 ORTHO05D009109 1.1e-34 150.2 158 48.1
Gorai.001G184000 Gossypium raimondii HOM05D007256 ORTHO05D009109 1.6e-33 146.4 142 52.8
Phvul.007G203900 Phaseolus vulgaris HOM05D007256 ORTHO05D009109 3.6e-33 145.2 135 53.3
Atru.chr12.1603 Acer truncatum HOM05D007256 ORTHO05D009109 4.7e-33 144.8 184 43.5
BcaB04g19715 Brassica carinata HOM05D007256 ORTHO05D009109 6.2e-33 144.4 152 47.4
Ca_10190_v3 Cicer arietinum L. HOM05D007256 ORTHO05D009109 1.1e-32 143.7 136 50.7
TPR.G2616 Trifolium pratense HOM05D007256 ORTHO05D009109 1.1e-32 143.7 137 49.6
HPP92_001218 Vanilla planifolia HOM05D007256 ORTHO05D009109 1.8e-32 142.9 135 52.6
VMungo0720G0365 Vigna mungo HOM05D007256 ORTHO05D009109 1.8e-32 142.9 135 52.6
Hund07289 Selenicereus undatus HOM05D007256 ORTHO05D009109 2.4e-32 142.5 238 36.1
AL6G38610 Arabidopsis lyrata HOM05D007256 ORTHO05D009109 4.0e-32 141.7 152 48.7
arahy.Tifrunner.gnm1.ann1.H7RZSB Arachis hypogaea HOM05D007256 ORTHO05D009109 6.9e-32 141.0 144 50.0
Glyma.10G144700 Glycine max HOM05D007256 ORTHO05D009109 6.9e-32 141.0 139 50.4
Aa31LG11G9900 Aethionema arabicum HOM05D007256 ORTHO05D009109 8.9e-32 140.6 138 52.2
arahy.Tifrunner.gnm1.ann1.Q851GZ Arachis hypogaea HOM05D007256 ORTHO05D009109 8.9e-32 140.6 143 48.3
A09p05700 Brassica napus HOM05D007256 ORTHO05D009109 2.6e-31 139.0 155 43.9
Psat1g134200 Pisum sativum HOM05D007256 ORTHO05D009109 5.8e-31 137.9 135 48.9
Thhalv10005088m.g Eutrema salsugineum HOM05D007256 ORTHO05D009109 9.9e-31 137.1 151 48.3
Medtr1g084750 Medicago truncatula HOM05D007256 ORTHO05D009109 1.3e-30 136.7 135 48.9
BcaC04g23634 Brassica carinata HOM05D007256 ORTHO05D009109 1.1e-29 133.7 155 43.2
C09p06290 Brassica napus HOM05D007256 ORTHO05D009109 1.1e-29 133.7 155 43.2
AT5G26749 Arabidopsis thaliana HOM05D007256 ORTHO05D009109 3.2e-29 132.1 171 42.1
THA.LOC104821748 Tarenaya hassleriana HOM05D007256 ORTHO05D009109 4.2e-29 131.7 147 44.9
SEGI_23053 Sequoiadendron giganteum HOM05D007256 ORTHO05D009109 5.4e-29 131.3 163 42.3
Cpa.g.sc48.207 Carica papaya HOM05D007256 ORTHO05D009109 7.1e-29 131.0 152 44.7
vmacro19770 Vaccinium macrocarpon HOM05D007256 ORTHO05D009109 1.6e-28 129.8 222 35.6
Sp2g21240 Schrenkiella parvula HOM05D007256 ORTHO05D009109 2.1e-28 129.4 135 46.7
Pp3c18_1910 Physcomitrium patens HOM05D007256 ORTHO05D009109 4.6e-28 128.3 138 45.7
TPR.G2644 Trifolium pratense HOM05D007256 ORTHO05D009109 6.0e-28 127.9 142 46.5
BraA09t36210Z Brassica rapa HOM05D007256 ORTHO05D009109 1.0e-27 127.1 173 39.3
BolC9t53549H Brassica oleracea HOM05D007256 ORTHO05D009109 1.5e-26 123.2 171 39.2
Sc09g0002500 Simmondsia chinensis HOM05D007256 ORTHO05D009109 2.8e-25 119.0 95 53.7
Mapoly0054s0011 Marchantia polymorpha HOM05D007256 ORTHO05D009109 1.8e-24 116.3 157 38.2
ATR0693G354 Amborella trichopoda HOM05D007256 ORTHO05D009109 9.0e-24 114.0 85 57.6
Gohir.D01G139700 Gossypium hirsutum HOM05D007256 ORTHO05D009109 7.6e-23 110.9 111 51.4
FAN05G3272 Fragaria x ananassa HOM05D000487 ORTHO05D000405 9.9e-23 110.5 99 54.5
PGR042G2181 Punica granatum HOM05D007256 ORTHO05D009109 1.6e-20 103.2 93 54.8
Carub.0006s2440 Capsella rubella HOM05D007256 ORTHO05D009109 1.0e-19 100.5 90 51.1
Aqoxy4G00797 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 2.8e-17 92.4 135 40.7
Rhsim05G0121300 Rhododendron simsii HOM05D007256 ORTHO05D009109 3.6e-17 92.0 70 60.0
Ah.10g027130 Amaranthus hybridus HOM05D007256 ORTHO05D009109 3.4e-15 85.5 71 53.5
HPP92_001189 Vanilla planifolia HOM05D007256 ORTHO05D009109 2.9e-14 82.4 45 73.3
SHI06526 Sapria himalayana HOM05D007256 ORTHO05D009109 1.6e-12 76.6 43 67.4
CARHR186830 Cardamine hirsuta HOM05D007256 ORTHO05D009109 4.3e-10 68.6 41 65.9
Cc02_g35520 Coffea canephora HOM05D007256 ORTHO05D009109 1.1e-08 63.9 42 69.0
Gohir.D01G148000 Gossypium hirsutum HOM05D002544 ORTHO05D009109 1.1e-08 63.9 70 45.7
Nitab4.5_0000185g0380 Nicotiana tabacum HOM05D007256 ORTHO05D009109 1.3e-06 57.0 34 73.5


User provided reference genes

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