Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 0.0e+00 1261.9 645 100.0
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 1.9e-236 822.8 671 68.3
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 7.6e-214 747.7 660 62.4
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.1e-211 739.6 672 61.8
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 7.9e-211 737.6 669 61.7
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 3.7e-208 728.8 670 60.9
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 3.1e-207 725.7 708 60.5
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 4.1e-207 725.3 669 60.5
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 9.1e-207 724.2 669 60.4
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 2.6e-206 722.6 671 60.4
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 2.6e-206 722.6 669 60.1
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 5.2e-194 681.8 672 57.0
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 5.7e-193 678.3 668 57.2
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 4.2e-188 662.1 639 59.9
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 2.1e-187 659.8 669 55.9
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 6.3e-184 648.3 652 57.1
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 5.9e-182 641.7 691 54.7
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 8.0e-179 631.3 643 56.1
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 3.7e-176 622.5 768 49.7
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.1e-172 610.9 666 53.0
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.0e-170 604.4 666 51.1
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 2.3e-170 603.2 668 51.8
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 2.0e-169 600.1 668 51.5
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 5.7e-169 598.6 688 51.5
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 7.0e-167 591.7 667 51.1
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.9e-166 588.6 667 51.1
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.7e-165 587.0 602 56.6
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 5.0e-165 585.5 676 49.6
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 8.6e-165 584.7 667 51.0
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 2.5e-164 583.2 668 51.0
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 2.8e-163 579.7 651 51.3
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.8e-163 579.7 739 48.8
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 4.0e-162 575.9 677 50.4
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.5e-161 573.9 671 49.5
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 3.4e-161 572.8 658 50.8
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 2.2e-160 570.1 665 50.4
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 2.2e-160 570.1 647 51.2
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 4.9e-160 568.9 671 49.8
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 6.4e-160 568.5 674 50.4
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 4.1e-159 565.8 686 48.5
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 3.5e-158 562.8 645 50.4
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 5.9e-158 562.0 667 49.2
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.0e-157 561.2 670 51.3
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 1.7e-157 560.5 673 48.1
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 2.3e-157 560.1 677 49.8
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 5.0e-157 558.9 651 49.5
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 8.6e-157 558.1 643 50.4
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.5e-156 557.4 643 50.9
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 2.5e-156 556.6 675 49.5
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 9.5e-156 554.7 660 49.8
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.2e-155 554.3 649 50.5
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.4e-154 550.8 668 49.9
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.3e-154 550.1 653 48.2
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 4.0e-154 549.3 648 50.2
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 6.8e-154 548.5 668 49.4
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 1.5e-153 547.4 674 48.2
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 7.5e-153 545.0 598 52.2
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 7.5e-153 545.0 683 47.7
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 2.9e-152 543.1 669 48.4
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 8.3e-152 541.6 669 48.6
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 5.4e-151 538.9 645 49.3
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 1.6e-150 537.3 673 47.8
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 2.7e-150 536.6 614 51.0
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 6.0e-150 535.4 661 49.8
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 6.0e-150 535.4 676 47.5
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 3.0e-149 533.1 669 46.9
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 3.0e-149 533.1 669 47.2
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 1.5e-148 530.8 660 48.9
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 7.3e-148 528.5 646 48.8
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.6e-147 527.3 660 47.3
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 2.1e-147 526.9 666 47.0
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 2.8e-147 526.6 645 50.5
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 3.6e-147 526.2 643 49.3
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 3.6e-147 526.2 674 48.5
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 4.7e-147 525.8 649 48.7
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 8.1e-147 525.0 644 49.7
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.4e-146 524.2 650 48.8
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.4e-146 524.2 658 48.2
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 1.8e-146 523.9 667 48.6
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.8e-146 523.9 667 48.6
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.8e-146 523.9 667 48.6
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 2.6e-145 520.0 646 49.1
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.3e-144 517.7 645 50.1
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.3e-144 517.7 663 47.5
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 2.2e-144 516.9 654 47.4
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.3e-144 515.0 670 46.7
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 1.9e-143 513.8 695 44.3
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 3.2e-143 513.1 657 47.8
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 7.1e-143 511.9 665 46.3
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 6.0e-142 508.8 640 48.0
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 7.8e-142 508.4 544 54.2
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 5.1e-141 505.8 640 46.9
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 1.1e-140 504.6 615 47.5
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.2e-139 498.8 746 43.0
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 8.1e-139 498.4 643 47.0
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.1e-138 496.5 642 47.2
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 6.8e-138 495.4 643 47.3
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.9e-137 491.5 676 45.6
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.3e-136 491.1 669 45.1
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 6.4e-136 488.8 434 61.1
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 7.3e-132 475.3 647 44.5
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.6e-129 466.8 433 58.2
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 3.8e-128 463.0 604 47.2
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 6.0e-126 455.7 442 58.6
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 6.2e-123 445.7 605 44.6
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.4e-122 444.5 594 46.5
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 6.7e-117 425.6 417 56.4
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 4.3e-116 422.9 482 51.5
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.1e-106 391.7 645 40.0
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 2.0e-105 387.5 644 39.9
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 1.8e-101 374.4 649 36.7
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.9e-100 370.9 653 40.4
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.4e-97 360.1 399 52.4
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.5e-97 359.8 376 52.9
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 6.5e-96 355.9 632 40.2
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 7.2e-95 352.4 500 44.2
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.3e-92 343.6 403 49.6
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 6.1e-86 322.8 416 47.4
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 3.0e-85 320.5 639 34.9
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 8.8e-85 318.9 453 45.9
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 1.0e-77 295.4 450 43.6
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 6.7e-77 292.7 435 43.7
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 5.3e-74 283.1 424 43.2
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 1.6e-73 281.6 536 38.2
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 4.5e-73 280.0 205 69.3
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.7e-67 260.4 225 60.0
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.8e-66 258.1 338 47.3
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 9.1e-66 255.8 510 37.3
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.6e-65 255.0 444 40.1
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 4.5e-65 253.4 195 66.7
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 6.3e-59 233.0 211 57.8
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.8e-56 223.8 365 42.5
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 4.7e-54 216.9 264 49.6
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.1e-54 216.5 402 38.6
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 8.3e-51 206.1 546 34.6
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.4e-50 205.3 514 33.5
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.3e-48 198.7 521 33.2
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 4.7e-46 190.3 303 39.3
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 5.8e-44 183.3 170 55.3
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 1.2e-41 175.6 125 70.4
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.3e-40 171.4 147 63.9
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 8.0e-38 162.9 113 71.7
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 2.3e-37 161.4 152 53.3
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.9e-34 151.8 94 78.7
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 4.6e-33 147.1 228 42.5
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 5.1e-32 143.7 257 39.3
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 4.3e-31 140.6 166 50.6
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-31 140.2 148 48.6
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.6e-31 140.2 329 33.7
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.6e-30 138.7 166 50.6
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.8e-29 135.2 94 64.9
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 3.7e-27 127.5 195 40.0
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.1e-26 125.9 203 41.9
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 9.2e-26 122.9 130 47.7
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 2.3e-24 118.2 77 76.6
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 3.9e-24 117.5 200 40.5
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 7.3e-23 113.2 76 76.3
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 1.6e-22 112.1 73 76.7
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.1e-22 111.7 65 81.5
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.7e-22 110.5 237 31.6
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 1.8e-21 108.6 77 71.4
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 6.8e-21 106.7 120 54.2
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 3.8e-19 100.9 140 46.4
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.1e-18 99.4 204 37.3
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 1.9e-18 98.6 97 47.4
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 2.1e-17 95.1 73 65.8
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 6.6e-16 90.1 370 25.4
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.5e-15 89.0 70 65.7
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 8.1e-14 83.2 241 28.6
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 1.1e-13 82.8 53 77.4
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 2.4e-13 81.6 116 40.5
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.5e-12 79.0 50 80.0
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 2.6e-12 78.2 82 56.1
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 5.8e-12 77.0 66 60.6
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 6.4e-11 73.6 546 23.1
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.9e-10 72.0 45 75.6
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.4e-10 71.6 52 63.5
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 5.4e-10 70.5 462 22.5
CAN.G1034.2 Capsicum annuum HOM05D000222 ORTHO05D011077 1.6e-09 68.9 241 28.2
CAN.G523.5 Capsicum annuum HOM05D000222 ORTHO05D012343 5.1e-08 63.9 60 60.0
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 9.6e-07 59.7 66 54.5
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 3.6e-06 57.8 50 62.0
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 3.6e-06 57.8 50 62.0
SEGI_40538 Sequoiadendron giganteum HOM05D003810 ORTHO05D004416 6.2e-06 57.0 51 54.9
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 8.1e-06 56.6 45 64.4


User provided reference genes

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