Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 1.2e-161 573.5 386 100.0
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 5.1e-88 328.9 386 69.9
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 1.6e-81 307.4 356 73.0
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.0e-80 304.7 388 66.5
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 3.9e-80 302.8 389 67.6
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 5.6e-79 298.9 391 69.1
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 1.3e-78 297.7 386 66.6
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 2.8e-78 296.6 390 66.4
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 3.6e-78 296.2 390 67.2
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 6.2e-78 295.4 392 67.6
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 6.2e-78 295.4 392 67.6
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 9.0e-77 291.6 390 65.4
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 2.6e-76 290.0 387 66.7
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 9.9e-76 288.1 388 64.7
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 9.9e-76 288.1 388 66.2
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.3e-75 287.7 408 63.7
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 1.7e-75 287.3 390 51.5
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 2.2e-75 287.0 388 67.0
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.8e-75 286.2 388 65.7
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 6.4e-75 285.4 368 66.8
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 1.1e-74 284.6 393 66.7
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.1e-74 284.6 377 65.8
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.4e-74 284.3 390 65.9
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.9e-74 283.9 391 65.5
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 1.9e-74 283.9 389 57.1
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 2.4e-74 283.5 384 64.1
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 1.6e-73 280.8 388 65.7
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.1e-73 280.4 389 65.0
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 7.9e-73 278.5 390 64.9
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 3.0e-72 276.6 391 65.5
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.0e-72 276.6 388 63.9
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 3.0e-72 276.6 392 64.5
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 3.0e-72 276.6 392 62.5
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 3.0e-72 276.6 382 66.0
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 3.9e-72 276.2 390 64.4
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 5.1e-72 275.8 381 64.6
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 6.7e-72 275.4 390 64.4
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.1e-71 274.6 390 50.5
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.9e-71 273.9 381 65.4
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 2.5e-71 273.5 390 63.6
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 3.3e-71 273.1 390 63.6
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 3.3e-71 273.1 390 63.6
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 4.3e-71 272.7 392 65.3
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 5.6e-71 272.3 373 65.7
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 5.6e-71 272.3 391 65.0
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 7.4e-71 271.9 388 55.9
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 9.6e-71 271.6 386 63.5
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.3e-70 271.2 365 71.0
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 3.7e-70 269.6 387 64.3
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 2.4e-69 266.9 393 63.6
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 4.0e-69 266.2 398 61.3
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 5.3e-69 265.8 350 67.7
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 9.0e-69 265.0 389 64.0
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.2e-68 264.6 388 62.9
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.5e-68 264.2 389 64.3
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 2.6e-68 263.5 379 62.5
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 3.4e-68 263.1 416 50.5
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.4e-68 263.1 388 62.4
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 7.6e-68 261.9 384 63.3
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 3.8e-67 259.6 389 51.9
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.4e-66 257.7 388 63.9
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.9e-66 257.3 392 62.2
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.4e-66 256.9 388 62.1
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.2e-65 254.6 388 60.8
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 2.1e-65 253.8 336 70.2
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 3.5e-65 253.1 392 64.0
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 6.0e-65 252.3 388 60.1
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 2.3e-64 250.4 394 64.2
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.3e-63 246.5 386 63.5
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 4.3e-63 246.1 389 59.6
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 7.4e-63 245.4 384 63.0
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 9.6e-63 245.0 384 62.8
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 9.6e-63 245.0 396 42.7
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 1.3e-62 244.6 391 61.9
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 2.1e-62 243.8 375 63.2
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 4.8e-62 242.7 384 63.0
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.4e-61 241.1 378 62.7
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 9.0e-61 238.4 376 62.2
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 9.0e-61 238.4 376 62.2
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 1.2e-60 238.0 376 62.2
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 4.5e-60 236.1 379 60.7
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 8.4e-59 231.9 280 72.5
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 7.1e-58 228.8 280 72.9
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.2e-57 228.0 394 59.4
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 2.7e-57 226.9 379 59.9
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.0e-56 224.9 393 61.8
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.3e-56 224.6 394 60.7
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 3.9e-56 223.0 396 58.8
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 5.1e-56 222.6 334 67.7
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.1e-55 221.5 394 60.4
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 1.9e-55 220.7 373 60.3
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 3.3e-55 219.9 375 61.1
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 7.4e-55 218.8 269 72.5
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 1.3e-54 218.0 334 65.3
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 6.3e-54 215.7 384 59.1
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 8.2e-54 215.3 398 60.1
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 4.1e-53 213.0 351 63.2
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.1e-50 204.9 396 51.3
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 1.9e-50 204.1 386 56.5
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.9e-50 204.1 341 53.1
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 2.5e-50 203.8 499 34.7
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 7.2e-50 202.2 365 62.2
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 1.6e-49 201.1 365 62.2
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 2.7e-49 200.3 395 49.1
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 5.1e-48 196.1 376 56.9
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 4.3e-47 193.0 346 65.0
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 7.4e-47 192.2 385 55.3
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.5e-44 184.5 132 80.3
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 5.9e-44 182.6 366 56.8
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.3e-43 181.4 385 55.1
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 2.2e-43 180.6 382 57.1
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-41 174.5 132 78.0
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.4e-40 171.4 340 60.9
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 3.9e-40 169.9 284 65.1
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 2.0e-39 167.5 307 59.3
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 2.6e-39 167.2 132 73.5
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 1.7e-38 164.5 310 59.7
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 4.8e-38 162.9 366 53.8
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 6.3e-38 162.5 311 59.5
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 8.2e-38 162.2 390 51.8
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 5.7e-31 139.4 203 46.8
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.7e-30 137.9 169 49.1
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 4.5e-28 129.8 117 68.4
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 2.9e-27 127.1 245 64.9
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 8.5e-27 125.6 363 50.1
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 1.1e-26 125.2 198 44.4
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 9.4e-26 122.1 133 61.7
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 3.3e-23 113.6 187 45.5
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 4.4e-23 113.2 243 62.6
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 4.1e-21 106.7 331 52.6
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 5.5e-18 96.3 157 38.2
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 5.2e-16 89.7 232 55.2
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.8e-13 81.3 84 72.6
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.6e-12 78.2 80 53.8
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.3e-11 74.3 54 66.7
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.3e-11 74.3 59 61.0
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.1e-10 72.0 54 64.8


User provided reference genes

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