Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 2.0e-281 971.8 506 100.0
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 9.6e-220 766.9 509 80.4
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 2.9e-208 728.8 509 77.6
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 3.9e-205 718.4 514 75.9
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 3.4e-193 678.7 427 82.2
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.9e-192 675.6 512 73.4
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 4.6e-182 641.7 518 69.5
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.4e-177 625.5 520 68.8
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 4.5e-177 625.2 495 69.1
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 7.7e-177 624.4 515 68.3
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 3.2e-175 619.0 519 67.1
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 2.7e-174 615.9 515 68.5
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 2.0e-172 609.8 512 68.6
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 5.7e-172 608.2 509 69.4
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.7e-171 605.5 511 68.1
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-167 593.6 521 64.5
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.9e-167 593.2 521 64.3
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 2.1e-166 589.7 520 65.6
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.0e-165 587.4 523 64.4
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 3.9e-165 585.5 523 64.1
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 3.3e-164 582.4 520 64.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 6.3e-163 578.2 509 65.0
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 4.1e-162 575.5 512 63.3
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 5.3e-162 575.1 504 64.1
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.5e-161 573.5 516 62.4
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.0e-161 573.2 510 63.7
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.3e-160 570.5 494 64.0
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 2.2e-160 569.7 496 65.9
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.9e-160 569.3 511 61.6
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.8e-160 568.9 512 62.9
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 8.5e-160 567.8 503 63.4
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.2e-158 563.9 494 65.0
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 2.1e-158 563.1 483 65.2
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.0e-157 559.3 515 62.3
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 4.0e-157 558.9 517 61.3
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 4.0e-157 558.9 497 65.0
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 6.7e-157 558.1 486 65.0
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.5e-156 557.0 485 64.1
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.8e-155 552.7 487 63.7
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.8e-155 552.7 508 60.2
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 8.2e-155 551.2 492 62.4
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.1e-154 549.3 466 65.2
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 4.1e-154 548.9 489 63.4
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.2e-153 547.4 480 63.3
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 1.2e-153 547.4 492 64.4
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 2.0e-153 546.6 481 62.8
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 2.6e-153 546.2 513 60.8
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 4.5e-153 545.4 519 60.7
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 8.5e-152 541.2 505 62.0
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.1e-151 540.8 495 62.4
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.5e-151 540.4 520 61.0
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 4.2e-151 538.9 492 61.4
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 5.5e-151 538.5 483 63.6
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 7.2e-151 538.1 489 63.0
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 2.1e-150 536.6 483 62.5
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 2.1e-150 536.6 440 66.4
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 4.0e-149 532.3 485 62.7
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.2e-148 530.8 480 61.9
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.0e-148 530.0 486 62.1
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 2.0e-148 530.0 398 70.6
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 3.4e-148 529.3 439 65.8
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 4.4e-148 528.9 446 65.7
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 9.8e-148 527.7 486 61.9
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 9.8e-148 527.7 497 62.0
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.2e-147 526.6 462 65.4
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 4.8e-147 525.4 480 61.5
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 5.4e-146 521.9 487 62.6
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 5.4e-146 521.9 479 60.3
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.6e-145 520.4 497 58.4
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.3e-144 517.3 419 67.8
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.7e-144 516.9 480 59.6
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 3.8e-144 515.8 387 71.1
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 3.8e-144 515.8 386 71.2
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 5.0e-144 515.4 483 62.3
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.2e-143 512.7 483 60.7
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 4.2e-143 512.3 483 60.0
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 7.2e-143 511.5 488 60.0
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 4.7e-142 508.8 487 60.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 8.0e-142 508.1 495 59.2
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 8.0e-142 508.1 482 59.1
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.0e-141 507.7 491 60.5
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.4e-141 507.3 513 55.2
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 3.0e-141 506.1 481 59.0
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 8.8e-141 504.6 483 61.7
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.5e-140 503.8 487 59.8
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 5.7e-140 501.9 482 60.0
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.7e-139 500.4 490 59.0
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.8e-139 499.6 489 58.9
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 8.3e-139 498.0 391 67.8
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.8e-138 496.9 510 57.1
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 5.4e-138 495.4 489 59.7
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 7.0e-138 495.0 501 58.3
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 9.2e-138 494.6 481 59.5
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.6e-137 493.8 501 59.1
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 4.5e-137 492.3 488 57.6
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 5.9e-137 491.9 486 58.2
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.0e-136 491.1 494 57.9
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.3e-136 490.7 489 58.9
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 2.3e-136 490.0 489 58.7
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 2.3e-136 490.0 482 57.9
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 5.0e-136 488.8 486 58.6
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 5.0e-136 488.8 496 58.9
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 6.6e-136 488.4 484 57.6
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.6e-136 488.4 488 58.6
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 8.6e-136 488.0 480 58.1
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.5e-135 487.3 495 59.2
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.9e-135 486.9 398 66.3
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 3.3e-135 486.1 495 59.2
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.3e-135 486.1 443 61.6
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 4.3e-135 485.7 489 57.1
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 2.1e-134 483.4 510 55.5
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.1e-134 483.4 489 55.8
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.8e-134 483.0 495 59.0
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 4.7e-134 482.3 493 56.8
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 8.0e-134 481.5 486 56.8
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 5.2e-133 478.8 483 55.9
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-132 477.6 489 56.6
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.6e-132 476.5 478 57.1
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 9.8e-132 474.6 483 56.3
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 9.8e-132 474.6 317 76.3
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 6.4e-131 471.9 422 63.5
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 8.3e-131 471.5 495 55.8
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.4e-130 469.9 483 55.5
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 7.0e-130 468.4 485 56.9
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.0e-129 466.8 485 56.5
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 2.7e-129 466.5 482 55.8
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.0e-128 464.5 479 54.7
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.0e-128 464.5 400 62.5
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.3e-128 463.4 486 54.1
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 6.6e-128 461.8 486 53.9
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.8e-126 456.4 492 53.7
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 3.6e-126 456.1 498 54.2
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 6.8e-125 451.8 481 53.6
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 6.8e-125 451.8 499 54.1
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.5e-124 450.7 487 54.8
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 3.4e-124 449.5 485 53.6
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 4.4e-124 449.1 449 57.0
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.3e-123 447.6 511 53.2
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.7e-123 446.0 479 53.0
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.1e-122 444.5 485 54.4
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 5.4e-122 442.2 482 54.6
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.2e-121 441.0 489 53.2
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 1.7e-115 420.6 389 59.4
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 6.4e-115 418.7 456 54.2
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.2e-113 414.5 278 73.4
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 8.1e-110 401.7 507 47.5
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.2e-101 372.5 478 49.8
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 3.4e-100 369.8 387 51.2
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 2.7e-89 333.6 460 43.3
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.7e-89 333.6 367 51.8
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.1e-87 328.2 270 66.7
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.3e-78 298.1 192 83.3
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.2e-60 238.4 341 41.1
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 3.8e-59 233.4 446 35.9
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.1e-53 215.3 195 62.1
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 2.2e-51 207.6 283 45.9
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.3e-43 181.8 336 38.1
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 5.0e-43 179.9 129 77.5
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 8.5e-43 179.1 117 72.6
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 8.5e-43 179.1 147 63.3
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.5e-42 178.3 137 73.7
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 6.7e-40 169.5 129 74.4
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 2.4e-37 161.0 145 65.5
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 1.5e-34 151.8 99 71.7
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 6.1e-33 146.4 340 34.1
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.5e-26 125.2 99 59.6
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 8.0e-25 119.4 316 32.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.4e-21 108.6 166 41.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.4e-21 108.6 166 41.6
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 5.9e-20 103.2 70 64.3
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 2.3e-19 101.3 407 26.8
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.8e-13 81.6 323 28.2
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.7e-11 75.1 55 60.0
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 1.8e-08 65.1 112 44.6
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 4.0e-08 63.9 71 50.7


User provided reference genes

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