Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 3.3e-239 831.2 409 100.0
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 6.2e-193 677.6 412 82.0
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.9e-189 666.0 439 76.8
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.5e-186 656.4 411 79.3
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.4e-184 649.8 420 77.6
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.8e-184 649.4 413 79.7
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 9.9e-183 643.7 417 78.2
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.1e-181 640.2 349 87.4
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.4e-181 639.8 427 76.8
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.4e-181 639.8 411 77.1
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.4e-181 639.8 411 76.9
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 4.1e-181 638.3 341 88.0
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 7.1e-181 637.5 412 76.7
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.2e-180 636.7 378 83.1
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 6.0e-180 634.4 344 87.5
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.7e-179 632.9 403 80.1
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 2.3e-179 632.5 406 78.1
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 8.6e-179 630.6 404 78.0
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.9e-178 629.4 338 88.2
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.9e-178 629.4 344 87.5
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 5.6e-178 627.9 405 79.0
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.6e-178 627.9 396 78.8
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 7.3e-178 627.5 405 77.8
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 9.5e-178 627.1 404 77.0
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.2e-177 626.7 406 77.6
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 2.1e-177 625.9 341 87.7
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 2.8e-177 625.5 413 77.5
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 2.8e-177 625.5 413 76.8
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 4.7e-177 624.8 406 78.1
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 4.7e-177 624.8 355 85.4
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 6.2e-177 624.4 401 78.3
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 1.1e-176 623.6 339 87.3
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.8e-176 622.9 393 79.4
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 2.4e-176 622.5 376 81.4
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 3.1e-176 622.1 340 87.9
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 5.2e-176 621.3 404 78.2
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 5.2e-176 621.3 392 79.6
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 8.9e-176 620.5 394 79.2
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 8.9e-176 620.5 397 78.8
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-175 620.2 394 78.7
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.2e-175 620.2 411 75.4
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.5e-175 619.8 394 78.7
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.5e-175 619.8 394 79.2
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.5e-175 619.8 345 84.9
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.5e-175 619.8 405 77.8
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.0e-175 619.4 394 78.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 2.6e-175 619.0 400 77.0
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 3.4e-175 618.6 339 87.3
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 4.4e-175 618.2 396 78.3
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 5.8e-175 617.8 396 78.5
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 9.9e-175 617.1 409 76.0
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.3e-174 616.7 405 77.3
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.3e-174 616.7 412 76.0
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 1.7e-174 616.3 404 77.0
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 2.2e-174 615.9 410 76.3
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.2e-174 615.9 344 86.0
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 2.2e-174 615.9 406 76.8
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 2.9e-174 615.5 408 75.5
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 2.9e-174 615.5 341 86.5
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 6.4e-174 614.4 349 84.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 8.4e-174 614.0 412 75.7
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.4e-173 613.2 405 75.3
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 2.4e-173 612.5 394 78.4
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 4.2e-173 611.7 402 76.1
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 4.2e-173 611.7 405 75.3
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.1e-172 609.4 338 86.4
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 2.7e-172 609.0 393 76.6
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 3.5e-172 608.6 410 75.1
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 6.0e-172 607.8 404 75.0
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.7e-171 606.3 373 78.6
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.0e-171 605.5 391 76.7
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 6.6e-171 604.4 390 77.4
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 6.6e-171 604.4 347 82.4
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 6.6e-171 604.4 341 83.0
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 8.7e-171 604.0 341 84.8
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.5e-170 603.2 411 74.7
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.5e-170 603.2 411 75.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.5e-170 603.2 473 67.4
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.9e-170 602.8 391 76.5
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.9e-170 602.8 308 92.2
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.5e-170 602.4 391 77.0
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.5e-170 602.4 406 74.1
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 3.3e-170 602.1 389 75.8
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.3e-170 600.9 414 74.4
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 9.6e-170 600.5 389 75.6
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.1e-169 599.4 390 75.6
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 2.8e-169 599.0 390 75.6
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 3.6e-169 598.6 401 75.6
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.4e-168 596.7 408 74.3
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 3.1e-168 595.5 396 75.3
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 5.3e-168 594.7 389 77.4
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 2.0e-167 592.8 408 73.8
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 7.6e-167 590.9 372 78.5
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-166 588.6 410 72.9
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 3.8e-166 588.6 410 72.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.1e-165 587.0 405 73.6
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 3.2e-165 585.5 412 72.6
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 5.4e-165 584.7 375 77.6
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.5e-164 582.0 316 87.7
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.3e-163 579.3 302 89.1
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 6.6e-163 577.8 394 73.4
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-162 577.0 342 81.0
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.5e-162 576.6 498 61.4
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.5e-162 575.9 377 77.2
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.1e-160 570.5 314 85.7
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.2e-159 567.0 404 72.8
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 5.8e-159 564.7 557 56.7
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 3.8e-158 562.0 418 71.5
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 3.8e-158 562.0 382 75.4
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.5e-154 550.1 367 74.7
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 5.6e-154 548.1 366 74.9
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 5.6e-154 548.1 551 54.3
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 7.4e-154 547.7 404 69.3
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 6.2e-153 544.7 346 76.9
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 9.0e-152 540.8 374 73.8
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 2.6e-151 539.3 410 70.5
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 6.4e-150 534.6 373 68.9
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 8.4e-150 534.3 369 71.3
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.9e-149 533.1 360 71.7
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.8e-147 526.6 336 74.1
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 2.1e-145 519.6 303 78.5
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 4.6e-132 475.3 243 87.2
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 4.3e-130 468.8 362 64.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.5e-127 460.3 279 79.2
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.8e-126 455.7 406 61.1
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.1e-122 444.1 308 66.6
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.8e-120 436.8 367 58.3
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.3e-107 393.3 298 69.8
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.3e-107 393.3 255 78.0
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.0e-102 375.6 212 83.0
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.2e-101 371.7 355 54.6
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 3.6e-100 369.4 408 51.0
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.3e-97 360.9 218 79.8
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.8e-90 334.7 215 77.2
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 8.3e-89 331.6 291 53.6
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.3e-86 323.6 206 76.7
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.0e-78 296.6 251 63.7
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.2e-66 258.1 127 92.9
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 4.4e-66 256.1 341 40.8
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 4.4e-66 256.1 367 41.4
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 5.8e-66 255.8 318 44.0
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.9e-64 250.8 320 42.5
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.6e-62 242.3 415 37.3
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 5.2e-59 232.6 320 40.0
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.1e-55 220.7 179 63.7
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.1e-55 220.7 325 39.4
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 9.9e-50 201.8 247 41.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.2e-49 200.7 115 86.1
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 2.8e-44 183.7 155 60.6
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 3.0e-30 137.1 92 72.8
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.9e-25 120.6 55 94.5
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 7.2e-24 115.9 160 45.6
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 3.7e-20 103.6 62 79.0
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 3.1e-19 100.5 83 67.5
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 3.6e-15 87.0 49 81.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 1.8e-14 84.7 150 41.3
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 8.2e-12 75.9 40 80.0
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 5.3e-11 73.2 126 45.2
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 5.5e-08 63.2 29 82.8
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 4.7e-07 60.1 31 77.4
HanXRQChr08g0215991 Helianthus annuus HOM05D033391 ORTHO05D220840 8.8e-06 55.8 27 85.2


User provided reference genes

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