Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.2e-211 739.6 373 100.0
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 1.4e-42 177.9 161 65.2
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 2.2e-40 170.6 98 88.8
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.1e-31 141.7 89 86.5
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 3.6e-30 136.7 91 79.1
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 2.9e-24 117.1 89 67.4
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 6.5e-24 115.9 110 54.5
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 4.0e-21 106.7 88 67.0
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 1.8e-18 97.8 92 54.3
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 4.1e-18 96.7 98 56.1
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.6e-17 94.7 96 54.2
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.6e-17 94.7 96 54.2
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.5e-17 93.2 85 57.6
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 5.9e-17 92.8 97 54.6
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 7.7e-17 92.4 97 55.7
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.7e-16 91.3 97 53.6
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 2.2e-16 90.9 87 58.6
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 5.0e-16 89.7 84 56.0
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 1.1e-15 88.6 85 54.1
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.5e-15 88.2 97 53.6
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 2.5e-15 87.4 95 53.7
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 7.2e-15 85.9 93 50.5
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.6e-14 84.7 66 68.2
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 4.7e-14 83.2 101 48.5
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 8.0e-14 82.4 73 54.8
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 1.0e-13 82.0 96 49.0
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 1.4e-13 81.6 109 46.8
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 2.3e-13 80.9 96 47.9
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 3.0e-13 80.5 96 49.0
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 3.0e-13 80.5 75 54.7
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 4.0e-13 80.1 104 51.9
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 6.8e-13 79.3 86 46.5
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 8.8e-13 79.0 89 53.9
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 8.8e-13 79.0 87 49.4
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 8.8e-13 79.0 95 48.4
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 8.8e-13 79.0 96 47.9
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 8.8e-13 79.0 96 47.9
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 2.0e-12 77.8 96 46.9
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 2.0e-12 77.8 96 46.9
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.6e-12 77.4 96 45.8
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 2.6e-12 77.4 96 43.8
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 2.6e-12 77.4 87 48.3
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 2.6e-12 77.4 96 46.9
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 2.6e-12 77.4 96 46.9
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 3.4e-12 77.0 100 41.0
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 3.4e-12 77.0 68 55.9
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 4.4e-12 76.6 69 52.2
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 4.4e-12 76.6 69 52.2
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 5.7e-12 76.3 96 44.8
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 9.8e-12 75.5 61 63.9
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.3e-11 75.1 96 42.7
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 2.8e-11 73.9 101 41.6
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 3.7e-11 73.6 71 52.1
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.7e-11 73.6 101 47.5
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 4.8e-11 73.2 101 45.5
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 6.3e-11 72.8 85 44.7
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 8.3e-11 72.4 97 43.3
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 8.3e-11 72.4 85 47.1
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.1e-10 72.0 101 39.6
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 1.4e-10 71.6 96 43.8
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 1.8e-10 71.2 85 42.4
SGA_v2.0_scaffold37G14678 Striga asiatica HOM05D008438 ORTHO05D008827 1.8e-10 71.2 99 48.5
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 2.4e-10 70.9 101 47.5
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 2.4e-10 70.9 102 44.1
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 3.1e-10 70.5 92 42.4
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 4.1e-10 70.1 98 43.9
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 4.1e-10 70.1 98 43.9
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 4.1e-10 70.1 72 51.4
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 4.1e-10 70.1 97 43.3
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 7.0e-10 69.3 88 47.7
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 9.1e-10 68.9 120 44.2
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 9.1e-10 68.9 120 44.2
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.2e-09 68.6 97 43.3
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 1.6e-09 68.2 117 33.3
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 2.0e-09 67.8 72 47.2
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 2.0e-09 67.8 103 41.7
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 2.0e-09 67.8 103 42.7
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 2.0e-09 67.8 103 41.7
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 2.0e-09 67.8 103 42.7
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 2.0e-09 67.8 96 42.7
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 2.0e-09 67.8 120 42.5
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 2.0e-09 67.8 101 41.6
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 2.0e-09 67.8 104 46.2
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 2.7e-09 67.4 101 40.6
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 2.7e-09 67.4 124 37.1
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 3.5e-09 67.0 103 41.7
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 3.5e-09 67.0 120 36.7
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 3.5e-09 67.0 101 42.6
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 3.5e-09 67.0 100 39.0
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 4.5e-09 66.6 72 50.0
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 4.5e-09 66.6 113 38.1
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 4.5e-09 66.6 97 47.4
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 7.7e-09 65.9 87 39.1
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 1.0e-08 65.5 101 41.6
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 2.9e-08 63.9 101 40.6
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 2.9e-08 63.9 72 50.0
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 3.8e-08 63.5 103 38.8
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 5.0e-08 63.2 97 39.2
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 1.1e-07 62.0 67 50.7
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.9e-07 61.2 91 41.8
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 2.5e-07 60.8 95 42.1
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 3.3e-07 60.5 101 38.6
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 4.2e-07 60.1 101 37.6
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 9.5e-07 58.9 67 49.3
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.2e-06 58.5 91 40.7
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.8e-06 57.4 95 38.9
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 4.7e-06 56.6 93 37.6
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 4.7e-06 56.6 79 40.5
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 6.1e-06 56.2 93 37.6


User provided reference genes

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