Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 2.9e-84 315.1 150 100.0
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 5.2e-57 224.6 103 100.0
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 3.9e-52 208.4 99 93.9
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 2.5e-51 205.7 104 90.4
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 7.3e-51 204.1 98 91.8
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 7.3e-51 204.1 99 92.9
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 1.2e-50 203.4 99 89.9
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.2e-50 203.4 99 92.9
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.2e-50 203.4 99 92.9
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 2.1e-50 202.6 100 89.0
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 2.8e-50 202.2 99 89.9
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 2.8e-50 202.2 99 89.9
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 3.6e-50 201.8 103 89.3
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 3.6e-50 201.8 113 82.3
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 4.7e-50 201.4 99 89.9
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 6.2e-50 201.1 99 89.9
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 8.1e-50 200.7 99 88.9
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 8.1e-50 200.7 99 88.9
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.1e-49 200.3 99 88.9
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 1.1e-49 200.3 99 88.9
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 1.4e-49 199.9 99 88.9
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 1.4e-49 199.9 99 88.9
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 1.8e-49 199.5 99 88.9
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.8e-49 199.5 97 90.7
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.8e-49 199.5 97 90.7
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 2.4e-49 199.1 99 88.9
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 2.4e-49 199.1 99 88.9
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 5.2e-49 198.0 98 88.8
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 5.2e-49 198.0 99 87.9
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 5.2e-49 198.0 99 87.9
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 5.2e-49 198.0 99 87.9
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 5.2e-49 198.0 105 84.8
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 5.2e-49 198.0 98 87.8
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 1.2e-48 196.8 95 90.5
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.2e-48 196.8 95 90.5
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.2e-48 196.8 95 90.5
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 1.2e-48 196.8 98 88.8
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.2e-48 196.8 95 90.5
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 1.2e-48 196.8 99 86.9
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.2e-48 196.8 98 86.7
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 2.0e-48 196.1 114 78.1
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.6e-48 195.7 118 78.0
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 2.6e-48 195.7 103 87.4
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.6e-48 195.7 97 88.7
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 2.6e-48 195.7 105 82.9
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 3.4e-48 195.3 96 90.6
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 3.4e-48 195.3 95 89.5
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 7.6e-48 194.1 99 87.9
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 9.9e-48 193.7 96 89.6
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 1.3e-47 193.4 99 87.9
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.3e-47 193.4 99 86.9
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 1.7e-47 193.0 96 89.6
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 2.2e-47 192.6 104 83.7
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 3.8e-47 191.8 95 88.4
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.8e-47 191.8 100 84.0
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 3.8e-47 191.8 96 89.6
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 3.8e-47 191.8 96 89.6
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 6.4e-47 191.0 147 62.6
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 6.4e-47 191.0 100 84.0
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 8.4e-47 190.7 99 84.8
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 8.4e-47 190.7 98 87.8
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 8.4e-47 190.7 103 86.4
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 1.1e-46 190.3 98 85.7
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 1.1e-46 190.3 96 88.5
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 1.1e-46 190.3 96 87.5
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.4e-46 189.9 99 82.8
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 1.4e-46 189.9 99 82.8
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.9e-46 189.5 96 87.5
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 2.4e-46 189.1 99 81.8
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 2.4e-46 189.1 99 81.8
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 2.4e-46 189.1 99 81.8
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 2.4e-46 189.1 102 82.4
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.4e-46 189.1 99 81.8
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.4e-46 189.1 99 81.8
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 3.2e-46 188.7 99 83.8
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 3.2e-46 188.7 96 85.4
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.2e-46 188.3 99 81.8
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 4.2e-46 188.3 98 86.7
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 5.4e-46 188.0 96 86.5
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 7.1e-46 187.6 99 80.8
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 7.1e-46 187.6 99 80.8
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 7.1e-46 187.6 100 80.0
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 7.1e-46 187.6 99 80.8
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 2.1e-45 186.0 99 80.8
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 2.1e-45 186.0 99 80.8
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 2.1e-45 186.0 99 80.8
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 2.1e-45 186.0 99 80.8
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 2.1e-45 186.0 99 80.8
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 2.1e-45 186.0 95 86.3
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 2.1e-45 186.0 100 80.0
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 4.6e-45 184.9 96 85.4
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 6.0e-45 184.5 104 76.9
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 7.8e-45 184.1 95 83.2
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 1.0e-44 183.7 100 81.0
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 1.3e-44 183.3 95 83.2
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 3.0e-44 182.2 99 79.8
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 3.9e-44 181.8 98 82.7
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 3.9e-44 181.8 98 82.7
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 6.6e-44 181.0 95 83.2
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 8.7e-44 180.6 98 79.6
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 8.7e-44 180.6 100 79.0
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 8.7e-44 180.6 100 79.0
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 8.7e-44 180.6 100 79.0
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.1e-43 180.3 98 80.6
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.9e-43 179.5 100 78.0
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 1.9e-43 179.5 86 90.7
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 3.3e-43 178.7 99 79.8
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 4.3e-43 178.3 98 75.5
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 4.3e-43 178.3 134 62.7
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 9.6e-43 177.2 106 77.4
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 9.6e-43 177.2 106 77.4
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.3e-42 176.8 135 63.7
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 1.6e-42 176.4 99 79.8
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 2.8e-42 175.6 98 80.6
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 9.0e-41 170.6 132 62.9
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 9.0e-41 170.6 98 77.6
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 1.2e-40 170.2 104 70.2
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.5e-40 169.9 98 77.6
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.5e-40 169.9 98 77.6
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.5e-40 169.9 98 77.6
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.5e-40 169.9 98 77.6
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.5e-40 169.9 98 77.6
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 3.4e-40 168.7 98 73.5
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 7.6e-40 167.5 90 84.4
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 3.8e-39 165.2 82 89.0
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.4e-38 163.3 96 70.8
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 1.9e-38 162.9 108 70.4
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 5.4e-38 161.4 99 68.7
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 5.4e-38 161.4 107 70.1
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.6e-37 159.8 104 68.3
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.1e-37 159.5 98 75.5
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 4.6e-37 158.3 97 68.0
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.8e-36 156.4 78 87.2
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 1.8e-36 156.4 96 70.8
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 3.3e-35 152.1 110 65.5
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 4.3e-35 151.8 74 86.5
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 5.3e-33 144.8 78 82.1
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 9.0e-33 144.1 76 78.9
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 3.8e-31 138.7 80 75.0
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 4.9e-31 138.3 98 56.1
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 5.5e-30 134.8 120 60.0
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 1.8e-28 129.8 99 66.7
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 7.4e-27 124.4 105 50.5
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 9.0e-25 117.5 82 74.4
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 1.5e-24 116.7 78 60.3
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.5e-24 116.7 83 72.3
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 1.0e-20 104.0 63 68.3
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 1.0e-20 104.0 63 68.3
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 1.0e-20 104.0 63 68.3
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 4.1e-17 92.0 57 66.7
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 6.9e-17 91.3 90 45.6
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 1.5e-16 90.1 60 68.3
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 3.4e-16 89.0 88 43.2
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 1.9e-14 83.2 80 55.0
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 1.8e-12 76.6 55 67.3
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 8.2e-10 67.8 82 51.2
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 1.4e-09 67.0 70 40.0
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 1.0e-07 60.8 139 32.4


User provided reference genes

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