Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1976.1 1008 100.0
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1788.5 1042 89.1
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1698.3 1034 83.7
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1683.3 1037 82.3
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1673.7 1041 81.0
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1669.1 1031 82.3
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1660.2 1038 81.3
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1649.4 1034 80.9
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1648.6 1039 80.5
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1647.9 1036 80.8
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1646.7 1035 80.7
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1643.6 1034 80.0
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1640.9 1015 81.8
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1638.2 1042 79.8
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1628.2 1021 80.2
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1626.7 1073 77.9
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1623.2 1014 80.8
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1614.7 1032 79.6
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1610.5 1041 79.1
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1605.9 1027 79.6
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1601.3 1042 78.1
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1600.5 1046 78.3
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1598.6 1043 77.8
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1595.1 1045 77.4
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1593.9 1034 78.6
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1593.2 1015 79.5
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1592.0 1042 78.2
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1590.1 1046 78.3
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1588.9 1045 77.3
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1588.2 1054 77.7
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1582.4 1053 77.5
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1076 75.9
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1581.6 1044 77.5
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1579.7 1063 75.7
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1576.2 1034 77.4
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1575.5 1034 77.4
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1575.1 1046 77.2
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1571.2 1055 76.8
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1571.2 1008 78.8
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1568.9 1032 76.8
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1568.5 1047 76.9
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1566.2 1055 76.6
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1562.4 1026 77.4
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1561.6 1036 76.4
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1561.2 1042 75.9
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1560.4 1051 76.2
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1558.9 1042 76.3
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1557.3 1057 75.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1553.5 1030 76.7
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1550.0 1011 76.9
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1547.7 1013 77.6
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1545.4 1049 75.9
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1535.0 1045 75.4
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1533.1 1045 75.6
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1532.7 1015 76.3
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1531.9 1047 75.4
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1531.5 1044 75.1
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1529.6 1030 75.4
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1528.1 1037 75.9
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1524.2 1041 75.1
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1523.5 1042 74.8
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1522.7 1041 74.4
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1522.3 1025 75.6
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1039 74.9
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1520.0 1045 74.7
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1519.2 1040 74.4
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1518.8 1043 73.8
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1518.1 1041 74.1
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1517.7 1037 75.0
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1515.0 1046 74.5
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1514.2 1042 74.0
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1514.2 1044 75.2
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1514.2 1026 75.4
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1511.5 1033 75.0
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1511.5 1039 74.1
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1508.8 1039 73.9
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1508.0 1041 74.9
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1503.4 1008 75.3
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1498.4 1144 69.2
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1046 73.1
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1497.6 1048 73.2
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1497.6 1033 74.9
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1493.8 1041 74.5
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1491.5 1046 73.6
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1491.1 1043 73.3
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1489.9 1045 73.0
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1489.9 1045 73.0
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1487.2 1041 73.1
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1486.1 1041 73.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1483.8 1044 73.1
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1482.6 1039 74.1
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1481.5 1039 74.0
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1480.7 1042 73.1
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1479.9 1008 74.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1467.2 1049 73.0
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1466.8 1044 72.0
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1461.0 1083 71.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1459.1 1081 71.1
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1457.2 1031 72.3
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1450.3 1053 70.9
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1427.9 1036 72.7
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1411.7 1014 70.4
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1375.9 943 74.0
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1375.5 903 76.7
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1374.4 1049 68.6
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1332.4 1042 69.2
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1315.1 953 69.4
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1303.9 980 69.4
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1300.0 1028 67.0
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1299.6 1010 67.0
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1268.4 1015 63.9
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1186.0 816 73.4
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1090.9 1024 55.7
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1082.4 1011 57.4
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.7e-305 1052.7 758 73.4
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 5.6e-304 1047.7 1011 54.5
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 6.8e-302 1040.8 1027 54.8
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-289 998.0 979 56.4
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 6.6e-289 997.7 587 86.2
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 9.0e-286 987.3 714 69.0
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.6e-285 985.7 702 70.2
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 3.4e-269 932.2 1002 52.0
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.8e-269 931.4 931 56.6
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 7.1e-267 924.5 995 52.8
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.4e-262 910.2 612 74.5
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 2.4e-262 909.4 1004 51.7
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.8e-239 832.0 552 76.3
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 7.2e-235 818.1 479 85.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.6e-218 763.8 444 86.5
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 6.6e-196 688.7 1017 43.3
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 4.9e-191 672.5 437 77.6
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 6.8e-185 652.1 985 41.8
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 9.6e-179 631.7 399 77.4
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-174 617.8 481 67.4
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.0e-172 611.7 386 80.8
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 2.3e-172 610.5 520 60.4
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 1.9e-163 580.9 1043 36.5
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 8.7e-156 555.4 437 65.2
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.1e-154 550.8 411 65.9
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.2e-142 510.4 373 70.2
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.1e-141 506.1 367 70.6
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.1e-141 506.1 367 70.6
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-136 491.5 372 69.9
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 2.7e-133 480.7 322 73.9
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 2.3e-132 477.6 533 51.2
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.7e-130 471.5 497 55.7
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.8e-121 441.4 1049 31.8
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-117 428.3 558 45.5
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 6.1e-117 426.4 635 41.4
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.0e-108 399.1 276 71.4
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.4e-105 388.7 290 66.6
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 7.3e-94 349.7 279 66.3
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.0e-87 327.8 194 84.0
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.6e-87 326.2 485 43.5
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 7.8e-80 303.1 393 47.3
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 9.5e-78 296.2 507 36.3
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-70 271.6 410 44.1
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.9e-66 257.3 227 61.2
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.1e-63 247.3 151 76.8
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.0e-60 237.7 171 71.3
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-59 235.3 220 59.5
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.2e-57 227.6 273 47.6
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 6.0e-56 223.8 138 81.2
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 4.9e-50 204.1 200 57.0
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 3.2e-49 201.4 162 68.5
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 4.6e-48 197.6 126 77.8
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 3.6e-45 188.0 191 50.8
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 4.3e-38 164.5 125 67.2
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 1.8e-36 159.1 176 54.0
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 3.5e-32 144.8 253 38.7
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-31 141.0 121 60.3
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 2.8e-29 135.2 258 36.4
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.8e-28 132.5 93 75.3
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 6.5e-26 124.0 88 67.0
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 6.7e-15 87.4 67 61.2
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.4e-12 79.0 54 74.1
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.2e-11 76.6 72 48.6
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.0e-10 73.6 107 42.1
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 1.4e-09 69.7 49 67.3
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 1.4e-09 69.7 62 56.5


User provided reference genes

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