Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15612 Striga asiatica HOM05D030502 ORTHO05D030690 7.8e-95 350.5 184 100.0
SGA_v2.0_scaffold134G34752 Striga asiatica HOM05D030502 ORTHO05D030690 7.9e-39 164.5 121 80.2
SGA_v2.0_scaffold28G12029 Striga asiatica HOM05D030502 ORTHO05D405538 1.4e-22 110.5 209 43.5
SGA_v2.0_scaffold83G26326 Striga asiatica HOM05D001364 ORTHO05D001316 2.3e-14 83.2 54 90.7
SGA_v2.0_scaffold14G07133 Striga asiatica HOM05D001364 ORTHO05D001316 8.8e-14 81.3 55 87.3
SGA_v2.0_scaffold99G29515 Striga asiatica HOM05D030502 ORTHO05D030690 3.3e-13 79.3 186 37.6
SalBow6G4702 Salvia bowleyana HOM05D001364 ORTHO05D001316 2.6e-10 69.7 52 80.8
SGA_v2.0_scaffold145G36028 Striga asiatica HOM05D001364 ORTHO05D001316 5.9e-10 68.6 52 78.8
Nitab4.5_0002067g0020 Nicotiana tabacum HOM05D001364 ORTHO05D001316 2.9e-09 66.2 64 64.1
CANSAT11G2095 Cannabis sativa HOM05D001364 ORTHO05D001316 6.5e-09 65.1 55 72.7
Ca_18362_v3 Cicer arietinum L. HOM05D001364 ORTHO05D001316 8.5e-09 64.7 41 85.4
Cc00_g20090 Coffea canephora HOM05D001364 ORTHO05D001316 8.5e-09 64.7 52 75.0
Nitab4.5_0000294g0060 Nicotiana tabacum HOM05D001364 ORTHO05D001316 1.1e-08 64.3 52 75.0
Oeu019236.3 Olea europaea HOM05D001364 ORTHO05D001316 1.1e-08 64.3 49 75.5
Solyc10g047360.2 Solanum lycopersicum HOM05D001364 ORTHO05D001316 1.1e-08 64.3 49 75.5
Sopen10g017670 Solanum pennellii HOM05D001364 ORTHO05D001316 1.1e-08 64.3 49 75.5
PGSC0003DMG400031406 Solanum tuberosum HOM05D001364 ORTHO05D001316 1.1e-08 64.3 49 75.5
MSTRG.16598 Avicennia marina HOM05D001364 ORTHO05D001316 1.5e-08 63.9 65 64.6
TPR.G34508 Trifolium pratense HOM05D001364 ORTHO05D001316 1.9e-08 63.5 41 82.9
Medtr4g094260 Medicago truncatula HOM05D001364 ORTHO05D001316 4.2e-08 62.4 41 80.5
Oeu000252.1 Olea europaea HOM05D001364 ORTHO05D001316 5.5e-08 62.0 52 69.2
Gohir.A13G068400 Gossypium hirsutum HOM05D001364 ORTHO05D001316 7.2e-08 61.6 42 81.0
Gohir.D13G053300 Gossypium hirsutum HOM05D001364 ORTHO05D001316 7.2e-08 61.6 42 81.0
Gorai.013G060100 Gossypium raimondii HOM05D001364 ORTHO05D001316 7.2e-08 61.6 42 81.0
Rhsim05G0104100 Rhododendron simsii HOM05D001364 ORTHO05D001316 7.2e-08 61.6 43 83.7
Gohir.D12G016000 Gossypium hirsutum HOM05D001364 ORTHO05D001316 9.4e-08 61.2 42 81.0
Psat7g099920 Pisum sativum HOM05D001364 ORTHO05D001316 9.4e-08 61.2 41 80.5
Solyc03g094090.3 Solanum lycopersicum HOM05D001364 ORTHO05D001316 9.4e-08 61.2 76 51.3
VMungo0251G1868 Vigna mungo HOM05D001364 ORTHO05D030690 9.4e-08 61.2 72 54.2
CSS0029113 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D017670 1.2e-07 60.8 50 76.0
Sabra17G0038500 Salix brachista HOM05D001364 ORTHO05D001316 1.2e-07 60.8 49 75.5
Sabra17G0043100 Salix brachista HOM05D001364 ORTHO05D001316 1.2e-07 60.8 49 75.5
vmacro19943 Vaccinium macrocarpon HOM05D001364 ORTHO05D017670 1.2e-07 60.8 41 80.5
Duzib132G0232 Durio zibethinus HOM05D001364 ORTHO05D001316 1.6e-07 60.5 42 78.6
Glyma.08G177900 Glycine max HOM05D001364 ORTHO05D001316 1.6e-07 60.5 34 94.1
Lalb_Chr05g0217581 Lupinus albus HOM05D001364 ORTHO05D017670 1.6e-07 60.5 43 76.7
Phvul.006G205100 Phaseolus vulgaris HOM05D001364 ORTHO05D001316 1.6e-07 60.5 34 94.1
Potri.017G051600 Populus trichocarpa HOM05D001364 ORTHO05D001316 1.6e-07 60.5 49 73.5
Cpa.g.sc209.37 Carica papaya HOM05D001364 ORTHO05D001316 2.1e-07 60.1 42 78.6
Sopen05g029970 Solanum pennellii HOM05D001364 ORTHO05D001316 2.1e-07 60.1 54 66.7
arahy.Tifrunner.gnm1.ann1.9QV869 Arachis hypogaea HOM05D001364 ORTHO05D001316 2.7e-07 59.7 41 78.0
arahy.Tifrunner.gnm1.ann1.V2HYM6 Arachis hypogaea HOM05D001364 ORTHO05D001316 2.7e-07 59.7 41 78.0
CSS0050473 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 3.6e-07 59.3 43 79.1
Gorai.008G016100 Gossypium raimondii HOM05D001364 ORTHO05D001316 3.6e-07 59.3 42 78.6
Nitab4.5_0000103g0190 Nicotiana tabacum HOM05D001364 ORTHO05D001316 3.6e-07 59.3 58 60.3
Nitab4.5_0003429g0060 Nicotiana tabacum HOM05D001364 ORTHO05D001316 3.6e-07 59.3 58 60.3
Potri.001G311600 Populus trichocarpa HOM05D001364 ORTHO05D001316 3.6e-07 59.3 49 73.5
PGSC0003DMG400016798 Solanum tuberosum HOM05D001364 ORTHO05D001316 3.6e-07 59.3 54 66.7
vmacro06855 Vaccinium macrocarpon HOM05D001364 ORTHO05D001316 3.6e-07 59.3 76 47.4
AUR62013153 Chenopodium quinoa HOM05D001364 ORTHO05D001316 4.7e-07 58.9 66 56.1
ClCG10G009330 Citrullus lanatus HOM05D001364 ORTHO05D001316 4.7e-07 58.9 36 88.9
COL.COLO4_19748 Corchorus olitorius HOM05D001364 ORTHO05D001316 4.7e-07 58.9 42 76.2
Thecc.02G134700 Theobroma cacao HOM05D001364 ORTHO05D001316 4.7e-07 58.9 42 76.2
Hma1.2p1_1014F.1_g247860 Hydrangea macrophylla HOM05D001364 ORTHO05D001316 6.1e-07 58.5 40 75.0
Lj4g0012561 Lotus japonicus HOM05D001364 ORTHO05D001316 6.1e-07 58.5 48 72.9
Lalb_Chr09g0326811 Lupinus albus HOM05D001364 ORTHO05D001316 6.1e-07 58.5 41 75.6
Gohir.A12G015700 Gossypium hirsutum HOM05D001364 ORTHO05D001316 8.0e-07 58.2 34 88.2
Hma1.2p1_0784F.1_g217120 Hydrangea macrophylla HOM05D001364 ORTHO05D001316 8.0e-07 58.2 42 81.0
QL09p027326 Quercus lobata HOM05D001364 ORTHO05D001316 8.0e-07 58.2 51 58.8
Sopen03g024950 Solanum pennellii HOM05D001364 ORTHO05D001316 8.0e-07 58.2 83 47.0
MELO3C024821.2 Cucumis melo HOM05D001364 ORTHO05D001316 1.0e-06 57.8 36 86.1
CsaV3_4G009500 Cucumis sativus L. HOM05D001364 ORTHO05D001316 1.0e-06 57.8 36 86.1
COL.COLO4_27278 Corchorus olitorius HOM05D001364 ORTHO05D001316 1.4e-06 57.4 49 67.3
Duzib052G1094 Durio zibethinus HOM05D001364 ORTHO05D001316 1.4e-06 57.4 42 73.8
Glyma.15G054800 Glycine max HOM05D001364 ORTHO05D001316 1.4e-06 57.4 49 69.4
HanXRQChr11g0324731 Helianthus annuus HOM05D001364 ORTHO05D001316 1.4e-06 57.4 59 57.6
Nn1g05423 Nelumbo nucifera HOM05D001364 ORTHO05D001316 1.4e-06 57.4 58 67.2
Sed0007004 Sechium edule HOM05D001364 ORTHO05D001316 1.4e-06 57.4 54 66.7
Hund06372 Selenicereus undatus HOM05D001364 ORTHO05D001316 1.4e-06 57.4 42 73.8
Cfa005668 Carpinus fangiana HOM05D001364 ORTHO05D001316 1.8e-06 57.0 49 65.3
AUR62010156 Chenopodium quinoa HOM05D001364 ORTHO05D001316 1.8e-06 57.0 57 57.9
Manes.10G105142 Manihot esculenta HOM05D001364 ORTHO05D001316 2.3e-06 56.6 59 59.3
Nitab4.5_0005282g0030 Nicotiana tabacum HOM05D001364 ORTHO05D001316 2.3e-06 56.6 55 65.5
Nitab4.5_0007452g0020 Nicotiana tabacum HOM05D001364 ORTHO05D001316 2.3e-06 56.6 55 65.5
THA.LOC104801673 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 2.3e-06 56.6 42 73.8
EL10Ac9g21506 Beta vulgaris HOM05D001364 ORTHO05D001316 3.0e-06 56.2 57 56.1
DCAR_014649 Daucus carota HOM05D001364 ORTHO05D001316 3.0e-06 56.2 60 53.3
Migut.N01081 Erythranthe guttata HOM05D001364 ORTHO05D001316 3.0e-06 56.2 49 65.3
Manes.07G034000 Manihot esculenta HOM05D001364 ORTHO05D001316 3.0e-06 56.2 60 55.0
Rhsim03G0156900 Rhododendron simsii HOM05D001364 ORTHO05D001316 3.0e-06 56.2 41 70.7
THA.LOC104814766 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 3.0e-06 56.2 55 61.8
unitig_46.g18830 Utricularia gibba HOM05D001364 ORTHO05D001316 3.0e-06 56.2 57 59.6
ECA234G2412 Erigeron canadensis HOM05D001364 ORTHO05D001316 4.0e-06 55.8 46 69.6
Phvul.002G210300 Phaseolus vulgaris HOM05D001364 ORTHO05D001316 4.0e-06 55.8 49 67.3
CiPaw.06G155000 Carya illinoinensis HOM05D001364 ORTHO05D001316 5.2e-06 55.5 49 61.2
Lalb_Chr07g0185281 Lupinus albus HOM05D001364 ORTHO05D001316 5.2e-06 55.5 42 71.4
Sabra07G0078900 Salix brachista HOM05D001364 ORTHO05D001316 5.2e-06 55.5 58 55.2
Dinv13217 Davidia involucrata HOM05D001364 ORTHO05D001316 6.7e-06 55.1 34 85.3
MD00G1037000 Malus domestica HOM05D001364 ORTHO05D001316 6.7e-06 55.1 57 57.9
arahy.Tifrunner.gnm1.ann1.A3Z183 Arachis hypogaea HOM05D001364 ORTHO05D001316 8.8e-06 54.7 57 57.9
arahy.Tifrunner.gnm1.ann1.XUU5QY Arachis hypogaea HOM05D001364 ORTHO05D001316 8.8e-06 54.7 57 57.9
CANSAT56G1687 Cannabis sativa HOM05D001364 ORTHO05D001316 8.8e-06 54.7 34 82.4
MELO3C017625.2 Cucumis melo HOM05D001364 ORTHO05D001316 8.8e-06 54.7 77 49.4
ECA246G5186 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.8e-06 54.7 37 75.7
Glyma.08G133900 Glycine max HOM05D001364 ORTHO05D001316 8.8e-06 54.7 34 82.4
Lsat_1_v5_gn_9_58420 Lactuca sativa HOM05D001364 ORTHO05D001316 8.8e-06 54.7 80 47.5
QL11p022616 Quercus lobata HOM05D001364 ORTHO05D001316 8.8e-06 54.7 39 74.4
SMO141G0172 Selaginella moellendorffii HOM05D001364 ORTHO05D001316 8.8e-06 54.7 53 58.5
TWI77G0568 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 8.8e-06 54.7 57 61.4


User provided reference genes

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