Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.6e-275 952.2 505 100.0
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 6.5e-160 568.2 577 61.0
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 1.0e-144 517.7 573 55.8
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 1.0e-120 438.0 539 47.5
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.8e-117 427.2 589 46.2
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.1e-114 417.9 475 53.7
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.9e-114 417.2 578 47.2
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 7.0e-114 415.2 564 46.8
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 8.1e-110 401.7 511 44.4
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 8.9e-109 398.3 543 45.1
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.9e-107 393.3 536 42.0
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 2.9e-107 393.3 543 46.2
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.4e-106 391.0 543 45.9
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 3.2e-106 389.8 565 44.4
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 4.6e-105 386.0 578 45.7
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 6.6e-104 382.1 570 40.7
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 8.6e-104 381.7 592 43.4
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.2e-102 377.9 552 44.9
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.2e-102 377.9 571 42.7
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.6e-102 377.5 571 44.3
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 8.1e-102 375.2 555 45.0
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 4.0e-101 372.9 576 43.6
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 8.9e-101 371.7 575 39.3
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.5e-100 370.9 574 39.2
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 5.8e-100 369.0 535 44.5
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.3e-99 367.9 529 42.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.9e-99 365.9 534 38.6
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 6.4e-99 365.5 543 39.8
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.4e-98 364.4 551 44.3
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.4e-98 363.6 562 38.1
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 5.4e-98 362.5 576 38.0
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 3.5e-97 359.8 546 39.6
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.6e-97 359.4 562 37.7
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.0e-96 358.2 562 37.5
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 3.9e-96 356.3 544 41.9
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 5.1e-96 355.9 523 38.6
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.3e-95 353.2 553 40.5
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 2.1e-94 350.5 530 41.7
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 8.1e-94 348.6 535 40.6
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.4e-93 347.8 589 41.4
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.2e-92 344.7 512 38.5
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 4.4e-92 342.8 541 40.7
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.3e-91 341.3 545 42.4
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 2.2e-91 340.5 559 43.6
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 4.9e-91 339.3 543 40.7
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 4.9e-91 339.3 509 39.7
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.4e-90 337.8 581 40.8
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 3.2e-90 336.7 527 39.1
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 5.4e-90 335.9 536 42.0
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 5.4e-90 335.9 535 40.6
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.4e-90 335.9 553 38.2
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.3e-88 330.5 521 42.2
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 4.3e-87 326.2 538 40.1
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.3e-86 324.7 606 38.0
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.0e-84 317.4 542 40.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 7.1e-82 308.9 536 40.7
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 9.3e-82 308.5 555 36.9
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.2e-81 308.1 555 37.8
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 6.0e-81 305.8 523 39.6
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 7.9e-81 305.4 545 39.8
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.0e-80 305.1 513 36.8
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.3e-80 304.7 559 37.0
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.8e-80 304.3 581 36.5
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 8.7e-80 302.0 523 38.6
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.9e-79 300.8 536 35.6
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 2.1e-78 297.4 570 34.0
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.6e-78 296.6 552 37.1
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.0e-76 290.8 524 38.4
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.6e-76 290.4 527 37.6
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 4.5e-76 289.7 554 37.4
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 5.5e-74 282.7 528 36.7
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 5.5e-74 282.7 532 36.8
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 3.5e-73 280.0 510 37.5
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.3e-70 271.6 579 38.0
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.8e-69 267.7 548 36.3
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 9.0e-69 265.4 606 31.4
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 4.5e-68 263.1 501 36.5
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 1.0e-67 261.9 358 43.6
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.5e-66 257.3 349 43.3
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 5.5e-66 256.1 374 46.0
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 3.5e-65 253.4 508 37.6
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 2.5e-63 247.3 540 35.7
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 2.5e-63 247.3 484 33.7
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 1.3e-62 245.0 507 35.9
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.6e-62 244.6 497 32.6
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.7e-62 243.4 415 42.7
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 6.3e-62 242.7 366 38.8
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 5.0e-59 233.0 366 43.4
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 6.5e-59 232.6 248 48.4
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 7.9e-57 225.7 401 43.1
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 3.0e-56 223.8 476 36.6
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 5.1e-56 223.0 505 29.9
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.8e-54 216.5 528 29.5
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.4e-53 214.9 515 29.9
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-52 211.8 345 36.8
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.0e-51 208.8 491 29.7
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 6.1e-49 199.5 244 47.1
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.3e-47 193.7 257 42.8
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 4.4e-47 193.4 572 28.1
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.6e-44 184.1 292 34.9
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 2.0e-39 167.9 263 37.3
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 2.8e-38 164.1 153 52.9
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 8.5e-35 152.5 352 31.0
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.6e-33 148.3 310 31.0
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 6.1e-33 146.4 107 63.6
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 1.0e-32 145.6 113 61.1
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 4.0e-32 143.7 642 22.7
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 2.6e-31 141.0 189 49.7
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.6e-31 141.0 122 56.6
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 2.6e-31 141.0 117 58.1
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 7.5e-31 139.4 98 64.3
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.7e-30 138.3 114 56.1
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 3.7e-30 137.1 129 48.8
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 4.8e-30 136.7 150 44.7
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 5.3e-29 133.3 151 49.7
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 9.1e-29 132.5 91 62.6
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 4.5e-28 130.2 135 47.4
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 8.5e-27 125.9 131 46.6
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 1.2e-25 122.1 150 46.7
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 8.0e-25 119.4 92 60.9
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 3.1e-21 107.5 102 48.0
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 3.1e-21 107.5 82 56.1
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 2.0e-20 104.8 67 62.7
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.0e-19 102.4 81 51.9
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.9e-19 100.9 116 42.2
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.1e-18 99.0 93 47.3
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 4.0e-16 90.5 95 42.1
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 6.3e-14 83.2 69 50.7
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.4e-13 82.0 75 50.7
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.8e-13 81.6 71 49.3
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.4e-13 81.3 72 52.8
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 2.4e-13 81.3 75 53.3
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 3.1e-13 80.9 59 59.3
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 5.4e-13 80.1 95 38.9
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-12 79.0 80 42.5
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 4.5e-12 77.0 64 51.6
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 2.9e-11 74.3 74 41.9
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.9e-11 74.3 71 45.1
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.5e-10 72.0 76 44.7
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.5e-10 72.0 76 44.7
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.9e-10 71.6 198 28.3
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 5.6e-10 70.1 45 71.1
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 7.3e-10 69.7 64 51.6
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 6.1e-09 66.6 69 44.9
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.0e-08 65.9 105 31.4
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 9.8e-07 59.3 54 53.7
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 8.3e-06 56.2 50 48.0


User provided reference genes

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