Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 6.2e-152 540.8 282 100.0
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 1.0e-133 480.3 292 88.0
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 1.1e-132 476.9 328 79.9
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 2.1e-131 472.6 279 86.7
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.0e-130 470.3 290 84.5
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.7e-128 461.8 284 84.9
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 4.8e-128 461.5 290 82.4
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 4.8e-128 461.5 290 82.4
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 4.8e-128 461.5 290 82.4
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 8.2e-128 460.7 286 85.3
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 6.9e-127 457.6 290 83.4
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 6.9e-127 457.6 290 83.1
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 9.0e-127 457.2 290 83.1
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.2e-126 456.8 290 83.4
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.0e-126 456.1 273 84.2
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 2.0e-126 456.1 290 82.8
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.6e-126 455.7 290 83.1
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 3.4e-126 455.3 290 83.1
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 3.4e-126 455.3 273 84.2
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 5.8e-126 454.5 290 79.7
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.2e-125 452.6 290 84.1
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 8.4e-125 450.7 273 83.5
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.9e-124 449.5 296 81.1
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 1.9e-124 449.5 273 82.8
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 3.2e-124 448.7 274 83.6
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 3.2e-124 448.7 273 82.8
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 4.2e-124 448.4 274 83.2
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.2e-124 448.4 295 80.3
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 7.1e-124 447.6 290 79.7
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.1e-124 447.6 290 79.0
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 9.3e-124 447.2 290 82.4
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.2e-123 446.8 262 84.4
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.2e-123 446.8 298 81.5
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.7e-123 445.7 296 80.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.5e-123 445.3 290 79.3
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 4.6e-123 444.9 273 82.1
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.1e-123 444.5 290 79.3
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.0e-122 443.7 273 82.1
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.0e-122 443.7 316 75.9
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.0e-122 443.7 273 82.1
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.3e-122 443.4 290 78.6
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.8e-122 443.0 273 81.7
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.9e-122 441.8 321 74.8
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.9e-122 441.8 333 70.6
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.1e-122 441.4 275 81.1
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 6.7e-122 441.0 269 82.9
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 1.1e-121 440.3 297 81.1
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.5e-121 439.9 273 81.3
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.5e-121 439.9 291 77.7
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 2.5e-121 439.1 273 82.1
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 4.3e-121 438.3 274 80.7
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 4.3e-121 438.3 305 77.7
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 5.7e-121 438.0 290 78.3
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 2.8e-120 435.6 272 80.9
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 2.8e-120 435.6 290 77.2
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.7e-120 435.3 274 80.3
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 4.8e-120 434.9 273 80.6
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 6.3e-120 434.5 286 77.6
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 6.3e-120 434.5 290 76.9
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 8.2e-120 434.1 273 81.7
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 1.1e-119 433.7 273 80.2
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.4e-119 433.3 298 78.9
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.8e-119 433.0 290 81.0
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 6.9e-119 431.0 297 81.5
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 3.4e-118 428.7 273 78.8
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 3.4e-118 428.7 273 78.8
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 5.9e-118 427.9 289 76.1
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.7e-118 427.6 290 75.9
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 2.2e-117 426.0 311 73.0
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 2.2e-117 426.0 290 77.2
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 2.9e-117 425.6 290 76.9
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 3.8e-117 425.2 274 78.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.8e-117 425.2 290 76.2
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 5.0e-117 424.9 290 76.9
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.4e-116 423.3 276 77.2
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.9e-116 422.9 292 74.0
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.9e-116 422.9 273 78.4
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 5.5e-116 421.4 276 76.8
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 7.2e-116 421.0 292 76.0
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.2e-116 421.0 290 77.9
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 3.6e-115 418.7 290 76.6
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 3.6e-115 418.7 290 76.6
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 3.6e-115 418.7 280 77.5
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 6.1e-115 417.9 297 73.1
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 1.4e-114 416.8 280 77.9
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 5.1e-114 414.8 291 75.9
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 5.1e-114 414.8 327 71.6
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 8.8e-114 414.1 299 74.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 4.3e-113 411.8 291 76.3
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 7.4e-113 411.0 271 74.5
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 9.7e-113 410.6 273 75.5
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.8e-112 409.1 272 75.0
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 8.2e-112 407.5 273 75.8
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.1e-111 407.1 273 75.5
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 9.1e-111 404.1 263 79.1
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.2e-110 403.7 291 71.5
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 4.5e-110 401.7 309 68.6
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 5.0e-109 398.3 290 73.8
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 6.5e-109 397.9 273 75.1
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 6.5e-109 397.9 273 75.1
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.4e-108 396.7 334 67.7
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.2e-107 393.7 283 69.6
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.6e-107 393.3 274 70.8
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 3.6e-107 392.1 274 71.2
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.0e-106 390.6 274 70.8
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.2e-104 380.9 290 68.3
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 5.0e-101 371.7 264 73.1
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 2.7e-99 365.9 235 80.0
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 5.7e-97 358.2 262 73.7
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 4.8e-96 355.1 224 79.9
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.4e-95 352.8 264 68.6
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 3.8e-93 345.5 242 74.0
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 5.0e-93 345.1 226 77.9
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 6.1e-91 338.2 292 68.2
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 5.2e-90 335.1 293 67.6
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.1e-84 317.4 195 82.1
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.6e-83 313.5 276 59.4
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 8.0e-83 311.2 280 58.9
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.4e-81 305.8 258 62.8
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.7e-80 302.4 284 58.5
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 8.3e-80 301.2 267 61.4
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 3.1e-79 299.3 190 79.5
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 5.4e-79 298.5 231 71.9
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.0e-78 296.6 181 81.8
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.7e-77 293.5 294 56.1
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.5e-76 289.7 267 60.3
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 8.9e-74 281.2 195 76.9
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 5.4e-71 271.9 190 74.7
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.0e-71 271.6 198 66.7
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 7.0e-71 271.6 181 77.3
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.3e-69 267.3 254 56.7
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 7.3e-68 261.5 244 63.1
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.0e-57 226.9 147 78.9
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 4.7e-43 179.1 114 78.1
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.8e-40 169.5 104 79.8
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 4.9e-40 169.1 113 81.4
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 5.4e-39 165.6 113 75.2
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 6.2e-35 152.1 92 79.3
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-34 151.4 260 36.5
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 3.1e-34 149.8 112 69.6
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 2.6e-33 146.7 121 65.3
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.3e-32 144.4 86 93.0
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.9e-31 140.6 140 62.9
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 7.1e-31 138.7 86 80.2
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 3.9e-29 132.9 275 33.1
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 8.7e-29 131.7 208 43.3
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.6e-27 127.5 66 90.9
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.1e-27 127.1 120 59.2
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 4.8e-27 125.9 107 63.6
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 1.4e-26 124.4 120 57.5
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 1.4e-26 124.4 120 57.5
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.2e-25 121.3 120 56.7
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.2e-25 121.3 120 56.7
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 1.2e-25 121.3 88 80.7
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 2.6e-25 120.2 120 56.7
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 5.8e-25 119.0 120 58.3
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.6e-25 118.6 261 32.6
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 2.9e-24 116.7 120 55.8
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.4e-23 114.4 255 32.5
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 7.4e-20 102.1 152 38.8
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.3e-19 101.3 152 39.5
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.4e-18 97.8 152 38.8
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.8e-18 97.4 83 60.2
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.6e-17 92.0 62 79.0
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.4e-15 87.8 91 51.6
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 8.7e-13 78.6 43 86.0


User provided reference genes

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