Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 0.0e+00 2201.4 1087 100.0
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 0.0e+00 1396.3 1107 65.9
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 0.0e+00 1240.7 1121 58.1
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 0.0e+00 1239.6 930 68.0
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 0.0e+00 1111.7 1106 54.5
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 0.0e+00 1103.6 1138 52.9
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 6.2e-309 1064.3 1100 51.8
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 1.7e-306 1056.2 1106 51.4
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 2.9e-306 1055.4 1092 52.5
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 9.6e-294 1013.8 983 55.4
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.5e-291 1006.5 1164 48.8
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 3.0e-287 992.3 1095 50.3
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 2.9e-282 975.7 1127 48.5
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 1.9e-281 973.0 1093 48.7
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.4e-279 966.8 1140 48.1
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 5.1e-279 964.9 1123 48.4
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 5.7e-278 961.4 1069 48.8
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 4.1e-276 955.3 1137 48.1
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.2e-274 949.5 1127 47.1
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 6.5e-274 948.0 1160 47.1
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 4.2e-273 945.3 1096 48.1
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 3.6e-272 942.2 940 53.8
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 5.1e-271 938.3 1139 47.2
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.5e-270 936.8 1139 47.2
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 2.0e-270 936.4 1048 49.1
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 2.4e-268 929.5 1106 48.0
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 1.5e-267 926.8 1110 46.9
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 2.6e-267 926.0 831 57.0
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 3.5e-267 925.6 1131 46.5
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 1.3e-266 923.7 1060 49.3
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 1.5e-265 920.2 1092 47.4
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 1.9e-265 919.8 1137 46.4
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 2.1e-264 916.4 1125 47.3
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 3.0e-263 912.5 1137 47.2
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 3.3e-262 909.1 1092 46.3
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 4.5e-259 898.7 1135 47.0
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 2.9e-258 896.0 1129 44.8
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 8.5e-258 894.4 1076 47.1
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.6e-256 890.2 825 56.2
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 6.1e-256 888.3 1103 47.0
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 8.0e-256 887.9 1087 46.8
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.0e-255 887.5 1102 46.4
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 1.8e-255 886.7 1108 46.7
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 2.3e-255 886.3 1143 45.5
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 6.8e-255 884.8 1057 47.5
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 7.5e-254 881.3 1108 46.4
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 9.8e-254 880.9 1091 46.4
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 1.3e-253 880.6 1116 45.7
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.3e-253 880.6 1126 45.5
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 5.4e-252 875.2 1121 46.1
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 1.2e-251 874.0 1083 45.6
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 1.0e-250 870.9 1147 44.8
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 3.2e-249 865.9 1126 44.4
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 4.2e-249 865.5 1102 45.8
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 1.6e-248 863.6 1101 45.9
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 2.7e-248 862.8 1098 45.4
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 8.8e-247 857.8 1108 45.4
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 7.5e-246 854.7 1104 44.2
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 6.3e-245 851.7 1143 44.6
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 1.8e-244 850.1 744 57.5
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 9.1e-244 847.8 1108 45.1
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 5.0e-242 842.0 1120 44.1
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 6.6e-242 841.6 1146 44.9
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 1.1e-241 840.9 1108 44.0
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 1.0e-239 834.3 785 56.7
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 4.9e-237 825.5 1115 42.5
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 3.2e-236 822.8 1125 42.2
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 5.6e-233 812.0 1081 45.5
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 7.3e-233 811.6 1303 38.8
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 1.4e-231 807.4 1117 41.8
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 8.9e-231 804.7 1103 44.0
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 2.3e-226 790.0 905 49.0
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 2.8e-224 783.1 1128 42.6
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 1.9e-220 770.4 733 55.5
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 3.9e-218 762.7 1053 41.4
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 1.1e-217 761.1 973 43.8
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 2.2e-213 746.9 896 46.1
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 6.4e-213 745.3 744 51.5
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.9e-209 733.8 702 53.6
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 7.3e-209 731.9 909 46.3
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 1.5e-201 707.6 612 58.7
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 9.0e-199 698.4 741 51.7
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 3.0e-186 656.8 1042 40.8
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 2.1e-171 607.4 851 41.8
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 2.2e-157 560.8 1041 35.8
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 1.1e-140 505.4 1034 34.4
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 2.6e-137 494.2 538 49.8
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 1.1e-127 462.2 898 33.6
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 7.3e-108 396.4 752 37.1
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 2.8e-107 394.4 370 55.4
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 4.0e-106 390.6 546 43.4
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 5.4e-79 300.4 823 31.3
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 6.2e-75 287.0 664 31.9
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.8e-61 242.3 535 32.9
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 8.2e-43 180.3 185 56.2
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.5e-41 176.0 164 58.5
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 3.4e-41 174.9 167 53.9
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.0e-40 173.3 185 51.9
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.2e-39 167.9 174 54.0
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 1.7e-35 156.0 131 54.2
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 1.8e-34 152.5 93 72.0
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 3.1e-34 151.8 518 27.8
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 5.0e-32 144.4 142 54.2
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 2.0e-25 122.5 253 34.4
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 1.7e-24 119.4 391 28.1
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 3.2e-23 115.2 72 65.3
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 5.5e-23 114.4 74 62.2
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.3e-21 109.0 72 72.2
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.6e-20 105.5 71 70.4
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 5.4e-18 97.8 99 55.6
MBI11_g13135_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.5e-15 89.7 172 34.9
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 2.6e-12 79.0 81 46.9
CSS0041671 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 8.3e-11 73.9 62 66.1
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 8.3e-11 73.9 73 49.3
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 5.4e-10 71.2 59 59.3
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 7.0e-10 70.9 221 29.0
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 1.5e-07 63.2 200 26.0
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 1.9e-07 62.8 262 23.3
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 4.3e-07 61.6 198 24.7
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 7.3e-07 60.8 192 27.1
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 9.5e-07 60.5 198 22.7
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 9.5e-07 60.5 198 22.7
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 9.5e-07 60.5 198 23.7
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 9.5e-07 60.5 198 25.3
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.2e-06 60.1 198 23.2
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 1.6e-06 59.7 198 27.8
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.8e-06 58.9 197 23.4
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.8e-06 58.9 197 23.4
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 2.8e-06 58.9 194 24.7
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 4.7e-06 58.2 198 24.7
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 4.7e-06 58.2 196 26.5
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 6.1e-06 57.8 197 24.4
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 6.1e-06 57.8 199 22.1
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 6.1e-06 57.8 199 22.6
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 8.0e-06 57.4 201 25.9
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 8.0e-06 57.4 198 25.3
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 8.0e-06 57.4 198 24.7


User provided reference genes

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