Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.1e-156 556.6 292 100.0
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 1.2e-113 413.7 231 88.3
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 2.9e-112 409.1 232 88.4
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.1e-111 407.1 231 88.3
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 7.2e-111 404.4 231 86.1
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.6e-110 403.3 231 86.6
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.1e-110 402.9 229 86.9
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 2.1e-110 402.9 231 85.3
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.7e-110 402.5 231 85.7
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 4.7e-110 401.7 240 82.9
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 4.7e-110 401.7 231 85.3
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.7e-110 401.7 228 87.3
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 4.7e-110 401.7 231 85.3
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 7.9e-110 401.0 228 86.8
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 7.9e-110 401.0 231 84.8
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 7.9e-110 401.0 227 86.8
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.0e-109 400.6 226 86.7
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.0e-109 400.6 230 87.0
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.0e-109 400.6 231 85.3
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.4e-109 400.2 229 85.6
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.3e-109 399.4 231 84.8
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 5.2e-109 398.3 226 88.5
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 6.7e-109 397.9 231 84.8
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 6.7e-109 397.9 229 84.7
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 6.7e-109 397.9 229 84.7
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.1e-108 397.1 241 83.8
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.0e-108 396.4 229 85.6
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.0e-108 396.4 231 84.4
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 3.3e-108 395.6 231 83.5
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 3.3e-108 395.6 231 85.3
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.7e-108 394.8 224 86.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.2e-107 392.9 230 84.8
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 2.2e-107 392.9 225 85.8
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 2.2e-107 392.9 233 82.8
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 3.7e-107 392.1 231 82.7
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 4.8e-107 391.7 231 82.7
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 6.3e-107 391.3 229 84.7
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 8.2e-107 391.0 226 85.0
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.4e-106 390.2 234 81.6
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.8e-106 389.8 231 83.5
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.1e-106 389.0 235 81.3
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 3.1e-106 389.0 260 78.1
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.2e-105 387.1 229 83.0
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.6e-105 386.0 231 80.5
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 2.6e-105 386.0 225 84.4
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 4.5e-105 385.2 227 84.1
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 5.9e-105 384.8 248 78.2
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 7.7e-105 384.4 234 80.8
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.2e-104 382.9 232 80.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 2.9e-104 382.5 224 83.5
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.8e-104 382.1 229 83.8
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 6.5e-104 381.3 239 79.5
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 6.5e-104 381.3 259 75.7
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 6.5e-104 381.3 210 87.6
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 8.5e-104 380.9 227 82.4
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.5e-103 379.4 229 81.2
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 7.2e-103 377.9 231 79.7
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.2e-102 377.1 241 80.1
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 3.6e-102 375.6 227 81.1
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 8.0e-102 374.4 229 79.9
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 1.8e-101 373.2 221 80.1
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 3.0e-101 372.5 229 79.5
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 5.2e-101 371.7 233 77.3
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 6.7e-101 371.3 265 71.3
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.1e-100 370.5 230 78.3
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.1e-100 370.5 231 76.2
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.5e-100 370.2 231 80.1
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 3.3e-100 369.0 220 80.9
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 4.4e-100 368.6 229 78.6
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 5.7e-100 368.2 235 76.2
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.7e-99 366.7 227 78.9
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 2.2e-99 366.3 191 94.2
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 4.8e-99 365.2 214 81.3
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 1.1e-98 364.0 231 77.5
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.1e-98 364.0 229 77.3
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 2.4e-98 362.8 228 77.2
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 3.1e-98 362.5 228 78.5
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 5.3e-98 361.7 229 76.9
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 7.0e-98 361.3 238 75.6
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 7.0e-98 361.3 207 85.5
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.2e-97 360.5 226 78.3
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 3.5e-97 359.0 231 77.1
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 4.5e-97 358.6 273 69.6
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.0e-96 357.5 245 71.4
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.0e-96 357.5 229 76.0
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.7e-96 356.7 212 80.2
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 2.9e-96 355.9 238 74.8
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 2.9e-96 355.9 231 75.8
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 3.8e-96 355.5 228 76.8
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.5e-96 354.8 222 76.6
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.1e-95 354.0 222 76.1
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.2e-95 351.3 222 75.7
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 7.2e-95 351.3 238 71.8
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 7.2e-95 351.3 221 76.5
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 9.4e-95 350.9 214 79.4
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 4.7e-94 348.6 232 72.8
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 6.1e-94 348.2 205 80.5
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 6.1e-94 348.2 205 80.5
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 6.1e-94 348.2 230 74.8
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 1.4e-93 347.1 218 76.6
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 1.4e-93 347.1 218 76.6
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 5.2e-93 345.1 210 78.6
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.5e-92 343.6 228 75.0
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.7e-92 341.7 240 70.4
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.7e-91 340.1 222 73.9
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.7e-91 340.1 223 73.5
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.2e-91 339.7 242 69.4
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.8e-91 339.3 230 75.2
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.8e-91 339.3 301 62.5
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 4.8e-91 338.6 222 72.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 8.3e-91 337.8 233 70.4
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-88 330.1 272 63.6
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-87 327.0 230 72.2
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-87 327.0 230 72.2
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 4.2e-87 325.5 242 67.8
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 4.0e-85 318.9 228 69.3
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.4e-82 309.7 227 67.0
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 2.1e-78 296.6 173 80.9
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.4e-77 293.9 242 59.5
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 4.0e-77 292.4 220 64.5
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 4.4e-76 288.9 177 78.5
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 3.7e-75 285.8 230 63.0
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.2e-73 280.8 229 65.5
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.6e-73 280.4 198 67.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 8.6e-72 274.6 202 68.8
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 8.6e-72 274.6 236 63.6
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 5.6e-71 271.9 240 62.5
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 3.4e-68 262.7 203 62.1
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 9.8e-68 261.2 175 73.1
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 6.4e-67 258.5 147 85.7
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 2.4e-66 256.5 231 61.5
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 2.7e-65 253.1 234 55.6
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 9.2e-58 228.0 216 54.2
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.9e-56 222.6 129 86.0
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 4.6e-49 199.1 135 74.1
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 4.6e-49 199.1 135 74.1
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 4.6e-49 199.1 135 74.1
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 8.9e-45 184.9 105 84.8
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 9.9e-44 181.4 108 82.4
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.7e-43 180.6 204 53.4
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.0e-40 171.4 111 73.9
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.1e-34 151.4 153 56.9
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.2e-34 149.8 153 56.2
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.2e-34 149.8 153 56.2
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 2.1e-33 147.1 84 85.7
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 7.4e-31 138.7 194 40.7
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.1e-29 134.8 84 78.6
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 1.6e-25 120.9 73 76.7
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 1.6e-25 120.9 73 76.7
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 6.0e-25 119.0 72 76.4
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.3e-22 111.3 93 65.6
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 2.6e-20 103.6 68 70.6
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.2e-17 94.7 89 56.2
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 2.1e-17 94.0 60 71.7
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 7.9e-17 92.0 128 43.8
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 4.3e-15 86.3 59 69.5
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.8e-13 80.9 58 63.8
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 3.1e-13 80.1 86 51.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.2e-12 78.2 260 29.2
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.2e-12 78.2 58 69.0
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 4.3e-07 59.7 44 61.4
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 9.7e-07 58.5 49 59.2
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.3e-06 58.2 36 80.6


User provided reference genes

Program Settings