Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 4.1e-171 604.7 328 100.0
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.7e-140 503.1 348 80.5
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.6e-135 486.5 328 78.4
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 5.2e-126 454.9 327 73.4
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 5.8e-125 451.4 325 73.8
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 5.8e-125 451.4 411 62.3
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 4.9e-124 448.4 337 74.5
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 3.2e-123 445.7 331 74.6
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 4.1e-123 445.3 328 71.0
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 5.4e-123 444.9 306 74.5
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 2.7e-122 442.6 332 70.8
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.7e-122 442.6 328 70.1
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 4.6e-122 441.8 329 72.9
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 6.0e-122 441.4 328 68.6
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.3e-121 440.3 306 72.5
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 1.7e-121 439.9 328 68.3
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 3.0e-121 439.1 325 70.8
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 3.0e-121 439.1 328 68.9
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 8.6e-121 437.6 328 69.5
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 3.3e-120 435.6 302 74.2
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.6e-119 433.3 335 69.6
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.6e-119 433.3 311 74.9
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 4.7e-119 431.8 312 70.2
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 8.1e-119 431.0 324 71.3
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 6.8e-118 427.9 329 69.0
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.2e-117 427.2 325 69.5
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 3.4e-117 425.6 323 69.0
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 5.8e-117 424.9 307 71.0
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 7.5e-117 424.5 323 67.8
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 2.9e-116 422.5 399 63.7
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 4.9e-116 421.8 285 75.4
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.2e-115 419.1 301 71.4
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 1.6e-114 416.8 311 69.1
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.6e-114 416.8 321 67.3
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.6e-114 416.8 328 68.3
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 2.1e-114 416.4 356 64.9
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.7e-114 416.0 310 71.3
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.7e-114 416.0 332 67.5
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 4.6e-114 415.2 324 68.5
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 7.8e-114 414.5 311 69.1
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.0e-113 412.5 329 67.5
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.9e-113 412.1 328 67.4
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 5.1e-113 411.8 333 68.8
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 8.6e-113 411.0 320 67.8
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.1e-112 410.6 330 67.3
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 1.5e-112 410.2 323 68.1
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.9e-112 409.8 310 68.4
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.5e-112 409.5 329 67.2
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 2.5e-112 409.5 319 69.3
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 9.5e-112 407.5 326 67.2
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 4.7e-111 405.2 319 67.7
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 4.7e-111 405.2 325 66.2
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 6.2e-111 404.8 317 66.6
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.4e-110 403.7 328 65.9
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.8e-110 403.3 336 65.5
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.3e-110 402.9 321 66.0
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.1e-110 402.5 326 66.0
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.0e-109 399.8 286 69.6
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 4.4e-109 398.7 307 67.1
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 4.4e-109 398.7 317 65.6
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 7.6e-109 397.9 339 65.8
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 9.9e-109 397.5 326 65.6
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.7e-108 396.7 317 65.9
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.2e-108 396.4 322 66.1
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 2.2e-108 396.4 325 65.2
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 3.7e-108 395.6 317 65.3
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 3.7e-108 395.6 318 64.8
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 4.9e-108 395.2 319 65.5
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 6.4e-108 394.8 319 68.7
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 6.4e-108 394.8 286 69.9
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.4e-107 393.7 325 64.6
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.4e-107 392.9 281 69.8
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.4e-107 392.9 315 66.7
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 4.1e-107 392.1 288 68.4
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 7.1e-107 391.3 286 69.2
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.2e-106 390.6 312 67.0
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 1.2e-106 390.6 323 64.1
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.1e-106 389.8 324 63.6
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 2.7e-106 389.4 323 64.7
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.7e-106 389.4 322 64.9
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 6.0e-106 388.3 324 63.3
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 6.0e-106 388.3 324 63.3
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 6.0e-106 388.3 324 63.3
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.3e-105 387.1 308 64.9
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 1.7e-105 386.7 318 63.2
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.7e-105 386.7 344 60.8
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.0e-105 386.0 324 63.0
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 3.9e-105 385.6 320 65.3
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 5.1e-105 385.2 320 66.9
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 8.6e-105 384.4 310 65.5
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 8.6e-105 384.4 310 65.5
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.5e-104 383.6 324 63.6
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 2.5e-104 382.9 314 65.0
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.3e-104 382.5 325 62.2
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 5.6e-104 381.7 345 60.9
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 7.3e-104 381.3 317 64.7
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 9.6e-104 380.9 322 63.4
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 2.1e-103 379.8 310 65.5
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.1e-102 377.5 331 61.6
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.8e-102 376.7 310 65.2
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 2.4e-102 376.3 310 64.2
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 2.4e-102 376.3 310 64.2
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 6.8e-102 374.8 357 60.2
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-101 373.2 310 64.5
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 2.6e-101 372.9 310 64.5
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 4.4e-101 372.1 325 61.5
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 5.8e-101 371.7 329 62.3
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 7.6e-101 371.3 310 63.5
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 2.9e-100 369.4 313 62.6
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 4.9e-100 368.6 318 61.0
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 6.4e-100 368.2 314 62.7
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.9e-99 366.7 319 63.0
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 5.4e-99 365.2 315 63.2
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 6.0e-98 361.7 288 62.5
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.7e-97 360.1 283 62.9
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 3.9e-97 359.0 310 62.9
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.9e-97 359.0 305 62.3
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.9e-97 359.0 256 71.1
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 6.6e-97 358.2 320 60.6
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.9e-96 356.7 336 62.8
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 3.3e-96 355.9 328 59.8
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.1e-94 350.9 293 60.4
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.4e-94 349.7 300 63.7
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 2.4e-91 339.7 345 56.2
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 8.7e-89 331.3 322 56.2
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.4e-86 323.2 388 51.5
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 4.2e-83 312.4 314 57.0
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.6e-82 310.5 335 54.9
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 7.9e-82 308.1 323 54.5
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-79 300.8 310 56.1
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 6.2e-79 298.5 322 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.4e-78 296.6 286 55.9
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.2e-76 290.0 320 54.1
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 3.8e-76 289.3 286 54.2
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 6.5e-76 288.5 313 54.6
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 1.9e-72 276.9 327 54.4
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 1.8e-70 270.4 249 57.0
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 1.7e-68 263.8 281 53.4
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 5.5e-67 258.8 167 77.2
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 7.2e-67 258.5 271 55.0
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.5e-64 250.8 333 48.6
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 4.3e-64 249.2 221 64.3
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 5.9e-61 238.8 256 56.2
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.8e-60 236.1 178 66.3
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 3.0e-57 226.5 236 56.4
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 1.6e-50 204.1 149 65.8
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.7e-48 195.7 190 60.0
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.8e-47 193.4 137 73.7
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-46 190.7 176 62.5
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 2.0e-45 187.2 300 41.3
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.8e-38 164.1 150 64.0
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.9e-35 154.1 161 56.5
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.3e-33 147.1 119 73.1
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 4.0e-33 146.4 306 36.9
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-31 140.6 138 60.9
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 3.2e-27 126.7 293 34.5
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.4e-22 111.3 79 67.1
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 9.5e-19 98.6 99 58.6
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.0e-17 95.1 73 60.3
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.2e-14 83.6 89 51.7
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 7.0e-14 82.4 61 70.5
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 5.9e-13 79.3 90 47.8
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 4.0e-09 66.6 43 65.1
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 4.4e-08 63.2 97 42.3
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 7.5e-08 62.4 38 84.2


User provided reference genes

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