Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold35G14106 Striga asiatica HOM05D006490 ORTHO05D405018 2.3e-134 482.3 245 100.0
SGA_v2.0_scaffold166G38351 Striga asiatica HOM05D006490 ORTHO05D008301 5.8e-21 105.5 61 90.2
SGA_v2.0_scaffold79G25583 Striga asiatica HOM05D006490 ORTHO05D008301 1.1e-19 101.3 58 89.7
Migut.B01686 Erythranthe guttata HOM05D006490 ORTHO05D008301 6.2e-15 85.5 60 75.0
SGA_v2.0_scaffold153G37067 Striga asiatica HOM05D006490 ORTHO05D008301 8.1e-15 85.1 59 78.0
MSTRG.17232 Avicennia marina HOM05D006490 ORTHO05D008301 4.4e-13 79.3 59 69.5
Solyc01g091800.3 Solanum lycopersicum HOM05D006490 ORTHO05D008301 4.9e-12 75.9 59 64.4
Sopen01g037580 Solanum pennellii HOM05D006490 ORTHO05D008301 4.9e-12 75.9 59 64.4
PGSC0003DMG400017050 Solanum tuberosum HOM05D006490 ORTHO05D008301 4.9e-12 75.9 59 64.4
Nitab4.5_0010430g0030 Nicotiana tabacum HOM05D006490 ORTHO05D008301 8.4e-12 75.1 59 64.4
Nitab4.5_0004550g0090 Nicotiana tabacum HOM05D006490 ORTHO05D008301 1.1e-11 74.7 58 65.5
CAN.G170.51 Capsicum annuum HOM05D006490 ORTHO05D008301 1.4e-11 74.3 59 62.7
CsaV3_3G009300 Cucumis sativus L. HOM05D006490 ORTHO05D008301 1.9e-11 73.9 87 48.3
ClCG05G001900 Citrullus lanatus HOM05D006490 ORTHO05D008301 2.4e-11 73.6 87 48.3
Potri.014G077100 Populus trichocarpa HOM05D006490 ORTHO05D008301 2.4e-11 73.6 87 50.6
Aqoxy5G03982 Aquilegia oxysepala HOM05D006490 ORTHO05D008301 3.2e-11 73.2 59 62.7
arahy.Tifrunner.gnm1.ann1.M2DA0A Arachis hypogaea HOM05D006490 ORTHO05D008301 3.2e-11 73.2 59 64.4
MELO3C006150.2 Cucumis melo HOM05D006490 ORTHO05D008301 4.2e-11 72.8 87 48.3
CiPaw.01G053400 Carya illinoinensis HOM05D006490 ORTHO05D008301 7.1e-11 72.0 60 60.0
AUR62004290 Chenopodium quinoa HOM05D006490 ORTHO05D008301 9.3e-11 71.6 60 61.7
EL10Ac1g00964 Beta vulgaris HOM05D006490 ORTHO05D008301 1.6e-10 70.9 93 46.2
DCAR_023894 Daucus carota HOM05D006490 ORTHO05D008301 1.6e-10 70.9 60 58.3
Nn1g01348 Nelumbo nucifera HOM05D006490 ORTHO05D008301 1.6e-10 70.9 60 60.0
Hund27326 Selenicereus undatus HOM05D006490 ORTHO05D008301 1.6e-10 70.9 92 46.7
Cfa004180 Carpinus fangiana HOM05D006490 ORTHO05D008301 2.1e-10 70.5 106 40.6
Ciclev10020970m.g Citrus clementina HOM05D006490 ORTHO05D008301 2.1e-10 70.5 106 44.3
Haze_15229 Corylus avellana HOM05D006490 ORTHO05D008301 2.1e-10 70.5 106 40.6
Lalb_Chr01g0021141 Lupinus albus HOM05D006490 ORTHO05D008301 2.1e-10 70.5 58 63.8
COL.COLO4_12627 Corchorus olitorius HOM05D006490 ORTHO05D008301 2.7e-10 70.1 60 58.3
Hma1.2p1_0398F.1_g143820 Hydrangea macrophylla HOM05D006490 ORTHO05D008301 2.7e-10 70.1 87 46.0
Lsat_1_v5_gn_7_8340 Lactuca sativa HOM05D006490 ORTHO05D008301 2.7e-10 70.1 59 59.3
TAR656G0005 Trochodendron aralioides HOM05D006490 ORTHO05D008301 2.7e-10 70.1 133 36.1
GSVIVG01027529001 Vitis vinifera HOM05D006490 ORTHO05D008301 2.7e-10 70.1 106 42.5
AUR62033365 Chenopodium quinoa HOM05D006490 ORTHO05D008301 3.5e-10 69.7 93 45.2
Medtr7g076280 Medicago truncatula HOM05D006490 ORTHO05D008301 3.5e-10 69.7 59 61.0
Atru.chr7.2364 Acer truncatum HOM05D006490 ORTHO05D008301 4.6e-10 69.3 60 60.0
Psat0s1132g0040 Pisum sativum HOM05D006490 ORTHO05D008301 4.6e-10 69.3 59 59.3
TAR003G0001 Trochodendron aralioides HOM05D006490 ORTHO05D008301 4.6e-10 69.3 133 36.1
HanXRQChr06g0169021 Helianthus annuus HOM05D006490 ORTHO05D008301 6.0e-10 68.9 87 46.0
Peaxi162Scf00021g00524 Petunia axillaris HOM05D006490 ORTHO05D008301 6.0e-10 68.9 59 61.0
TPR.G37730 Trifolium pratense HOM05D006490 ORTHO05D008301 6.0e-10 68.9 59 59.3
Lj9A577G54 Lonicera japonica HOM05D006490 ORTHO05D008301 7.8e-10 68.6 87 44.8
Manes.05G040300 Manihot esculenta HOM05D006490 ORTHO05D008301 7.8e-10 68.6 87 44.8
QL08p050661 Quercus lobata HOM05D006490 ORTHO05D008301 7.8e-10 68.6 87 47.1
Thecc.01G368800 Theobroma cacao HOM05D006490 ORTHO05D008301 7.8e-10 68.6 60 56.7
TWI59G0097 Tripterygium wilfordii HOM05D006490 ORTHO05D008301 7.8e-10 68.6 121 38.0
Ah.05g176030 Amaranthus hybridus HOM05D006490 ORTHO05D008301 1.0e-09 68.2 93 44.1
CDE12G0440 Ceratophyllum demersum HOM05D006490 ORTHO05D008301 1.0e-09 68.2 105 41.9
Glyma.18G227900 Glycine max HOM05D006490 ORTHO05D008301 1.0e-09 68.2 58 58.6
Lj1g0027165 Lotus japonicus HOM05D006490 ORTHO05D008301 1.0e-09 68.2 58 60.3
ATR0757G055 Amborella trichopoda HOM05D006490 ORTHO05D008301 1.3e-09 67.8 59 61.0
CANSAT56G3458 Cannabis sativa HOM05D006490 ORTHO05D008301 1.3e-09 67.8 60 56.7
Duzib138G1247 Durio zibethinus HOM05D006490 ORTHO05D008301 1.3e-09 67.8 60 56.7
Glyma.09G264100 Glycine max HOM05D006490 ORTHO05D008301 1.3e-09 67.8 58 56.9
Rhsim01G0155600 Rhododendron simsii HOM05D006490 ORTHO05D008301 1.3e-09 67.8 98 40.8
Ca_07866_v3 Cicer arietinum L. HOM05D006490 ORTHO05D008301 1.7e-09 67.4 58 60.3
Phvul.008G070300 Phaseolus vulgaris HOM05D006490 ORTHO05D008301 1.7e-09 67.4 58 58.6
Prupe.2G154300 Prunus persica HOM05D006490 ORTHO05D008301 1.7e-09 67.4 82 48.8
VMungo1383G1476 Vigna mungo HOM05D006490 ORTHO05D008301 1.7e-09 67.4 58 58.6
C08p53880 Brassica napus HOM05D002904 ORTHO05D003206 3.0e-09 66.6 58 58.6
BraA09t42265Z Brassica rapa HOM05D002904 ORTHO05D003206 3.0e-09 66.6 58 58.6
Carub.0001s0036 Capsella rubella HOM05D006490 ORTHO05D008301 3.0e-09 66.6 58 58.6
CARHR000480 Cardamine hirsuta HOM05D006490 ORTHO05D008301 3.0e-09 66.6 58 58.6
Thhalv10008101m.g Eutrema salsugineum HOM05D006490 ORTHO05D008301 3.0e-09 66.6 58 58.6
Sp1g00430 Schrenkiella parvula HOM05D006490 ORTHO05D008301 3.0e-09 66.6 58 58.6
Actinidia33445 Actinidia chinensis HOM05D006490 ORTHO05D008301 3.9e-09 66.2 109 39.4
AL1G10470 Arabidopsis lyrata HOM05D006490 ORTHO05D008301 3.9e-09 66.2 58 56.9
AT1G01860 Arabidopsis thaliana HOM05D006490 ORTHO05D008301 3.9e-09 66.2 84 45.2
ECA236G2797 Erigeron canadensis HOM05D006490 ORTHO05D008301 3.9e-09 66.2 59 57.6
RcHm_v2.0_Chr1g0352201 Rosa chinensis HOM05D006490 ORTHO05D008301 3.9e-09 66.2 59 55.9
Sc02g0002220 Simmondsia chinensis HOM05D006490 ORTHO05D008301 3.9e-09 66.2 104 40.4
FAN06G1200 Fragaria x ananassa HOM05D006490 ORTHO05D008301 5.1e-09 65.9 94 42.6
Aa31LG1G11190 Aethionema arabicum HOM05D006373 ORTHO05D008145 6.6e-09 65.5 58 56.9
MD07G1128700 Malus domestica HOM05D006490 ORTHO05D008301 6.6e-09 65.5 59 57.6
FAN10G3169 Fragaria x ananassa HOM05D006490 ORTHO05D008301 8.7e-09 65.1 59 55.9
Gohir.D11G088800 Gossypium hirsutum HOM05D006490 ORTHO05D008301 8.7e-09 65.1 60 51.7
Gorai.007G094900 Gossypium raimondii HOM05D006490 ORTHO05D008301 8.7e-09 65.1 60 51.7
Gorai.009G376300 Gossypium raimondii HOM05D006490 ORTHO05D008301 8.7e-09 65.1 60 51.7
Oeu024418.2 Olea europaea HOM05D006490 ORTHO05D008301 8.7e-09 65.1 85 48.2
THA.LOC104814092 Tarenaya hassleriana HOM05D006490 ORTHO05D008301 8.7e-09 65.1 58 60.3
FAN01G0731 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.1e-08 64.7 59 55.9
FAN10G0695 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.1e-08 64.7 59 55.9
FvH4_7g13110 Fragaria vesca HOM05D006490 ORTHO05D008301 1.5e-08 64.3 59 54.2
FAN03G0539 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.5e-08 64.3 59 55.9
FAN06G2547 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.5e-08 64.3 59 54.2
CSS0016422 Camellia sinensis var. sinensis HOM05D006490 ORTHO05D008301 2.5e-08 63.5 134 35.8
Cc02_g37650 Coffea canephora HOM05D006490 ORTHO05D008301 2.5e-08 63.5 108 41.7
PSO063G2041 Papaver somniferum HOM05D006490 ORTHO05D008301 2.5e-08 63.5 87 42.5
Eucgr.D02236 Eucalyptus grandis HOM05D006490 ORTHO05D008301 3.3e-08 63.2 87 43.7
Gohir.A11G084700 Gossypium hirsutum HOM05D006490 ORTHO05D008301 3.3e-08 63.2 60 51.7
Cc02_g37220 Coffea canephora HOM05D006490 ORTHO05D008301 4.3e-08 62.8 109 43.1
arahy.Tifrunner.gnm1.ann1.90SIZ3 Arachis hypogaea HOM05D006490 ORTHO05D008301 5.6e-08 62.4 76 50.0
CiPaw.01G023700 Carya illinoinensis HOM05D006490 ORTHO05D008301 2.8e-07 60.1 73 46.6
Mapoly0057s0065 Marchantia polymorpha HOM05D006490 ORTHO05D008301 2.8e-07 60.1 164 30.5
Zm00001eb208500 Zea mays HOM05D006490 ORTHO05D008301 2.8e-07 60.1 60 48.3
Pp3c10_22230 Physcomitrium patens HOM05D006490 ORTHO05D008301 2.4e-06 57.0 59 49.2


User provided reference genes

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