Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold359G49854 Striga asiatica HOM05D003066 ORTHO05D004162 3.0e-176 621.7 306 100.0
SGA_v2.0_scaffold163G38030 Striga asiatica HOM05D003066 ORTHO05D004162 2.2e-78 296.6 250 67.6
CiPaw.15G039000 Carya illinoinensis HOM05D003066 ORTHO05D004162 4.3e-74 282.3 250 64.0
Eucgr.C03047 Eucalyptus grandis HOM05D003066 ORTHO05D004162 1.3e-73 280.8 250 63.2
QL02p001223 Quercus lobata HOM05D003066 ORTHO05D004162 2.8e-73 279.6 250 63.2
MSTRG.14054 Avicennia marina HOM05D003066 ORTHO05D004162 6.2e-73 278.5 250 62.8
Prupe.1G412100 Prunus persica HOM05D003066 ORTHO05D004162 6.2e-73 278.5 250 62.8
AT4G33010 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 8.1e-73 278.1 253 62.8
Thhalv10024257m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 8.1e-73 278.1 253 62.5
FAN15G2565 Fragaria x ananassa HOM05D003066 ORTHO05D004162 8.1e-73 278.1 250 62.8
MD08G1061500 Malus domestica HOM05D003066 ORTHO05D004162 1.4e-72 277.3 250 62.4
TWI32G0839 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 1.4e-72 277.3 250 62.4
Eucgr.C00646 Eucalyptus grandis HOM05D003066 ORTHO05D004162 1.8e-72 276.9 250 62.0
MD15G1060200 Malus domestica HOM05D003066 ORTHO05D004162 1.8e-72 276.9 250 62.4
unitig_749.g13830 Utricularia gibba HOM05D003066 ORTHO05D004162 1.8e-72 276.9 250 62.0
vmacro14247 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 1.8e-72 276.9 245 62.0
THA.LOC104803730 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 2.4e-72 276.6 250 62.4
Aa31LG5G9680 Aethionema arabicum HOM05D003066 ORTHO05D004162 3.1e-72 276.2 253 62.1
MSTRG.1683 Avicennia marina HOM05D003066 ORTHO05D004162 3.1e-72 276.2 253 62.8
FAN27G1891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 3.1e-72 276.2 250 62.8
Lsat_1_v5_gn_3_24441 Lactuca sativa HOM05D003066 ORTHO05D004162 3.1e-72 276.2 250 62.4
Gohir.A06G089300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 4.0e-72 275.8 250 62.4
Gohir.D06G087600 Gossypium hirsutum HOM05D003066 ORTHO05D004162 4.0e-72 275.8 250 62.4
Gorai.010G101200 Gossypium raimondii HOM05D003066 ORTHO05D004162 4.0e-72 275.8 250 62.4
Hma1.2p1_0482F.1_g162430 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 4.0e-72 275.8 250 62.4
Hma1.2p1_1957F.1_g309050 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 4.0e-72 275.8 250 62.4
unitig_26.g9798 Utricularia gibba HOM05D003066 ORTHO05D004162 4.0e-72 275.8 250 63.2
FvH4_2g31940 Fragaria vesca HOM05D003066 ORTHO05D004162 5.3e-72 275.4 250 62.4
FAN24G0169 Fragaria x ananassa HOM05D003066 ORTHO05D004162 5.3e-72 275.4 250 62.4
Glyma.14G094700 Glycine max HOM05D003066 ORTHO05D004162 5.3e-72 275.4 250 62.4
Glyma.17G228800 Glycine max HOM05D003066 ORTHO05D004162 5.3e-72 275.4 250 62.4
Lalb_Chr14g0367671 Lupinus albus HOM05D003066 ORTHO05D004162 5.3e-72 275.4 250 61.6
Rhsim07G0142300 Rhododendron simsii HOM05D003066 ORTHO05D004162 5.3e-72 275.4 250 62.0
Sp7g30770 Schrenkiella parvula HOM05D003066 ORTHO05D004162 5.3e-72 275.4 253 61.7
Thhalv10001891m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 6.9e-72 275.0 250 61.6
RcHm_v2.0_Chr6g0310901 Rosa chinensis HOM05D003066 ORTHO05D004162 6.9e-72 275.0 250 62.8
Sp4g05960 Schrenkiella parvula HOM05D003066 ORTHO05D004162 6.9e-72 275.0 250 61.6
Carub.0007s0747 Capsella rubella HOM05D003066 ORTHO05D004162 9.0e-72 274.6 250 63.2
FAN20G2891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 9.0e-72 274.6 250 62.4
Nn8g38884 Nelumbo nucifera HOM05D003066 ORTHO05D004162 9.0e-72 274.6 253 61.7
TWI34G1165 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 9.0e-72 274.6 245 61.2
AL7G18660 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 1.2e-71 274.2 253 61.7
PGSC0003DMG400029938 Solanum tuberosum HOM05D003066 ORTHO05D004162 1.2e-71 274.2 250 62.8
TPR.G36085 Trifolium pratense HOM05D003066 ORTHO05D004162 1.2e-71 274.2 250 62.4
Haze_18191 Corylus avellana HOM05D003066 ORTHO05D004162 1.5e-71 273.9 250 61.6
ECA240G4675 Erigeron canadensis HOM05D003066 ORTHO05D004162 1.5e-71 273.9 253 62.1
Migut.E01566 Erythranthe guttata HOM05D003066 ORTHO05D004162 1.5e-71 273.9 250 62.4
Lj5g0020573 Lotus japonicus HOM05D003066 ORTHO05D004162 1.5e-71 273.9 250 61.6
Medtr1g016230 Medicago truncatula HOM05D003066 ORTHO05D004162 1.5e-71 273.9 250 62.4
Psat6g020400 Pisum sativum HOM05D003066 ORTHO05D004162 1.5e-71 273.9 250 62.0
AL4G18230 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 2.0e-71 273.5 248 61.3
Dinv27984 Davidia involucrata HOM05D003066 ORTHO05D004162 2.0e-71 273.5 250 62.4
HanXRQChr06g0173861 Helianthus annuus HOM05D003066 ORTHO05D004162 2.0e-71 273.5 253 61.7
HanXRQChr17g0538191 Helianthus annuus HOM05D003066 ORTHO05D004162 2.6e-71 273.1 261 60.9
Peaxi162Scf00477g00214 Petunia axillaris HOM05D003066 ORTHO05D004162 2.6e-71 273.1 250 62.8
Atru.chr7.1062 Acer truncatum HOM05D003066 ORTHO05D004162 3.4e-71 272.7 250 62.0
AT2G26080 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 3.4e-71 272.7 248 60.9
CANSAT25G3853 Cannabis sativa HOM05D003066 ORTHO05D004162 3.4e-71 272.7 250 62.4
CAN.G117.1 Capsicum annuum HOM05D003066 ORTHO05D004162 3.4e-71 272.7 250 62.4
Potri.006G229300 Populus trichocarpa HOM05D003066 ORTHO05D004162 3.4e-71 272.7 250 61.6
PGR031G0611 Punica granatum HOM05D003066 ORTHO05D004162 3.4e-71 272.7 250 61.6
CARHR241020 Cardamine hirsuta HOM05D003066 ORTHO05D004162 4.5e-71 272.3 253 60.9
Gohir.D05G044000 Gossypium hirsutum HOM05D003066 ORTHO05D004162 4.5e-71 272.3 245 62.0
Gorai.009G045100 Gossypium raimondii HOM05D003066 ORTHO05D004162 4.5e-71 272.3 245 62.0
Nitab4.5_0003627g0010 Nicotiana tabacum HOM05D003066 ORTHO05D004162 4.5e-71 272.3 250 62.4
Gohir.A05G042300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 5.8e-71 271.9 245 61.6
Solyc08g065220.3 Solanum lycopersicum HOM05D003066 ORTHO05D004162 5.8e-71 271.9 250 62.0
A01p05180 Brassica napus HOM05D003066 ORTHO05D004162 7.6e-71 271.6 253 61.3
BolC1t00546H Brassica oleracea HOM05D003066 ORTHO05D004162 7.6e-71 271.6 253 61.3
BraA01t00501Z Brassica rapa HOM05D003066 ORTHO05D004162 7.6e-71 271.6 253 61.3
Lsat_1_v5_gn_5_45900 Lactuca sativa HOM05D003066 ORTHO05D004162 7.6e-71 271.6 250 61.2
Sopen08g018830 Solanum pennellii HOM05D003066 ORTHO05D004162 7.6e-71 271.6 250 62.0
THA.LOC104799166 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 7.6e-71 271.6 250 61.6
vmacro00142 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 7.6e-71 271.6 250 61.6
Ca_13165_v3 Cicer arietinum L. HOM05D003066 ORTHO05D004162 1.0e-70 271.2 250 61.2
TAR383G0156 Trochodendron aralioides HOM05D003066 ORTHO05D004162 1.0e-70 271.2 245 60.4
CAN.G208.91 Capsicum annuum HOM05D003066 ORTHO05D004162 1.3e-70 270.8 250 62.0
CARHR114810 Cardamine hirsuta HOM05D003066 ORTHO05D004162 1.3e-70 270.8 250 61.2
Ciclev10007310m.g Citrus clementina HOM05D003066 ORTHO05D004162 1.3e-70 270.8 250 60.4
Nitab4.5_0001367g0020 Nicotiana tabacum HOM05D003066 ORTHO05D004162 1.3e-70 270.8 250 62.4
Sabra06G0177800 Salix brachista HOM05D003066 ORTHO05D004162 1.3e-70 270.8 250 61.2
PSO210G2602 Papaver somniferum HOM05D003066 ORTHO05D004162 1.7e-70 270.4 261 60.9
PSO210G3975 Papaver somniferum HOM05D003066 ORTHO05D004162 1.7e-70 270.4 261 60.9
SalBow1G0202 Salvia bowleyana HOM05D003066 ORTHO05D004162 1.7e-70 270.4 250 60.8
C01p05670 Brassica napus HOM05D003066 ORTHO05D004162 2.2e-70 270.0 253 60.9
Carub.0004s0590 Capsella rubella HOM05D003066 ORTHO05D004162 2.2e-70 270.0 250 61.6
DCAR_003129 Daucus carota HOM05D003066 ORTHO05D004162 2.2e-70 270.0 250 61.2
Phvul.001G035500 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 2.2e-70 270.0 250 61.2
VMungo0647G0915 Vigna mungo HOM05D003066 ORTHO05D004162 2.2e-70 270.0 250 61.6
arahy.Tifrunner.gnm1.ann1.9IV7G6 Arachis hypogaea HOM05D003066 ORTHO05D004162 2.9e-70 269.6 250 62.0
arahy.Tifrunner.gnm1.ann1.W9U8CY Arachis hypogaea HOM05D003066 ORTHO05D004162 2.9e-70 269.6 250 62.0
Rhsim11G0044200 Rhododendron simsii HOM05D003066 ORTHO05D004162 2.9e-70 269.6 250 60.4
Oeu036336.1 Olea europaea HOM05D003066 ORTHO05D004162 3.8e-70 269.2 250 60.8
Sed0010471 Sechium edule HOM05D003066 ORTHO05D004162 3.8e-70 269.2 250 61.2
CSS0005439 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 4.9e-70 268.9 250 60.8
CSS0037920 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 4.9e-70 268.9 250 60.8
Dinv22899 Davidia involucrata HOM05D003066 ORTHO05D004162 4.9e-70 268.9 250 60.8
Manes.16G080300 Manihot esculenta HOM05D003066 ORTHO05D004162 4.9e-70 268.9 250 60.8
Hund03339 Selenicereus undatus HOM05D003066 ORTHO05D004162 4.9e-70 268.9 250 60.8
Duzib150G0748 Durio zibethinus HOM05D003066 ORTHO05D004162 6.4e-70 268.5 250 61.6
ECA246G1238 Erigeron canadensis HOM05D003066 ORTHO05D004162 6.4e-70 268.5 261 59.4
CSS0003286 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 8.4e-70 268.1 231 62.8
CSS0010005 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 8.4e-70 268.1 231 62.8
EL10Ac2g03886 Beta vulgaris HOM05D003066 ORTHO05D004162 1.1e-69 267.7 250 60.4
COL.COLO4_21057 Corchorus olitorius HOM05D003066 ORTHO05D004162 1.1e-69 267.7 250 61.6
Oeu003985.1 Olea europaea HOM05D003066 ORTHO05D004162 1.1e-69 267.7 245 60.0
ClCG08G017010 Citrullus lanatus HOM05D003066 ORTHO05D004162 1.4e-69 267.3 250 61.2
Duzib187G0606 Durio zibethinus HOM05D003066 ORTHO05D004162 1.4e-69 267.3 250 61.2
Aqoxy7G01226 Aquilegia oxysepala HOM05D003066 ORTHO05D004162 1.9e-69 266.9 250 60.0
MELO3C010754.2 Cucumis melo HOM05D003066 ORTHO05D004162 1.9e-69 266.9 250 61.2
Thecc.09G053700 Theobroma cacao HOM05D003066 ORTHO05D004162 1.9e-69 266.9 250 60.8
CsaV3_2G025570 Cucumis sativus L. HOM05D003066 ORTHO05D004162 2.5e-69 266.5 245 60.4
AUR62022077 Chenopodium quinoa HOM05D003066 ORTHO05D004162 3.2e-69 266.2 250 60.0
Duzib168G0564 Durio zibethinus HOM05D003066 ORTHO05D004162 3.2e-69 266.2 250 60.8
Lalb_Chr23g0267761 Lupinus albus HOM05D003066 ORTHO05D004162 3.2e-69 266.2 250 60.8
TAR626G0016 Trochodendron aralioides HOM05D003066 ORTHO05D004162 4.2e-69 265.8 248 59.3
AUR62009150 Chenopodium quinoa HOM05D003066 ORTHO05D004162 5.5e-69 265.4 250 60.0
Lj7C275T3 Lonicera japonica HOM05D003066 ORTHO05D004162 7.1e-69 265.0 250 59.2
CDE06G2405 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 9.3e-69 264.6 251 59.0
CDE07G0857 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 1.2e-68 264.2 251 59.0
Cpa.g.sc7.178 Carica papaya HOM05D003066 ORTHO05D004162 1.6e-68 263.8 250 60.0
Migut.A00136 Erythranthe guttata HOM05D003066 ORTHO05D004162 2.1e-68 263.5 250 59.2
Sc09g0009820 Simmondsia chinensis HOM05D003066 ORTHO05D004162 3.5e-68 262.7 253 59.3
Ah.10g034390 Amaranthus hybridus HOM05D003066 ORTHO05D004162 4.6e-68 262.3 250 58.4
HanXRQChr13g0410471 Helianthus annuus HOM05D003066 ORTHO05D004162 4.6e-68 262.3 253 58.9
HPP92_006466 Vanilla planifolia HOM05D003066 ORTHO05D004162 1.8e-67 260.4 248 58.9
Hund19452 Selenicereus undatus HOM05D003066 ORTHO05D004162 3.9e-67 259.2 250 58.8
Glyma.04G051200 Glycine max HOM05D003066 ORTHO05D004162 1.5e-66 257.3 245 57.6
QL02p062818 Quercus lobata HOM05D003066 ORTHO05D004162 4.3e-66 255.8 245 56.3
SEGI_16222 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 9.6e-66 254.6 248 56.0
Glyma.06G052100 Glycine max HOM05D003066 ORTHO05D004162 8.2e-65 251.5 245 56.3
Zm00001eb406880 Zea mays HOM05D003066 ORTHO05D004162 9.0e-64 248.1 251 55.0
Phvul.009G077400 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 1.5e-63 247.3 251 55.8
VMungo1309G0513 Vigna mungo HOM05D003066 ORTHO05D004162 1.5e-63 247.3 248 55.2
Mapoly0068s0042 Marchantia polymorpha HOM05D003066 ORTHO05D004162 3.2e-61 239.6 248 53.6
Pp3c16_4520 Physcomitrium patens HOM05D003066 ORTHO05D004162 5.5e-61 238.8 248 53.2
Pp3c16_4550 Physcomitrium patens HOM05D003066 ORTHO05D004162 5.5e-61 238.8 248 53.2
Pp3c27_5030 Physcomitrium patens HOM05D003066 ORTHO05D004162 3.5e-60 236.1 248 52.4
Cc08_g10590 Coffea canephora HOM05D003066 ORTHO05D004162 1.8e-59 233.8 250 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1134 Anthoceros agrestis HOM05D003066 ORTHO05D004162 8.7e-59 231.5 245 52.2
GSVIVG01015211001 Vitis vinifera HOM05D003066 ORTHO05D004162 4.3e-58 229.2 246 55.7
ATR0749G006 Amborella trichopoda HOM05D003066 ORTHO05D004162 2.8e-57 226.5 244 54.1
SGA_v2.0_scaffold169G38693 Striga asiatica HOM05D003066 ORTHO05D004162 3.7e-57 226.1 164 70.7
BcaC09g52098 Brassica carinata HOM05D003066 ORTHO05D004162 2.0e-55 220.3 167 68.9
SEGI_37657 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 1.9e-53 213.8 208 57.7
Actinidia18187 Actinidia chinensis HOM05D003066 ORTHO05D004162 2.5e-53 213.4 137 76.6
Lj7C271T2 Lonicera japonica HOM05D003066 ORTHO05D004162 2.5e-53 213.4 162 66.7
CBR_g3314 Chara braunii HOM05D003066 ORTHO05D004162 5.5e-53 212.2 241 49.4
SMO201G0119 Selaginella moellendorffii HOM05D003066 ORTHO05D004162 3.6e-52 209.5 245 50.2
MCO15G616 Micromonas commoda HOM05D003066 ORTHO05D004162 3.3e-50 203.0 260 44.6
Cre12.g534800 Chlamydomonas reinhardtii HOM05D003066 ORTHO05D004162 2.2e-46 190.3 250 47.2
Oeu009352.1 Olea europaea HOM05D003066 ORTHO05D004162 4.7e-44 182.6 153 60.8
SEGI_30765 Sequoiadendron giganteum HOM05D003066 ORTHO05D021114 2.9e-38 163.3 140 60.0
SEGI_10531 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 7.2e-21 105.5 117 55.6
SEGI_06732 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 8.8e-19 98.6 102 54.9
Actinidia14716 Actinidia chinensis HOM05D003066 ORTHO05D004162 1.3e-17 94.7 161 40.4
Lsat_1_v5_gn_4_78620 Lactuca sativa HOM05D003066 ORTHO05D021114 1.1e-16 91.7 97 57.7
Actinidia14715 Actinidia chinensis HOM05D003066 ORTHO05D004162 4.2e-13 79.7 70 61.4
Actinidia18185 Actinidia chinensis HOM05D003066 ORTHO05D004162 1.7e-09 67.8 58 63.8
GSVIVG01035408001 Vitis vinifera HOM05D003066 ORTHO05D004162 3.7e-09 66.6 58 62.1
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 2.9e-06 57.0 32 84.4


User provided reference genes

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