Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 3.8e-203 711.4 408 100.0
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 3.0e-139 499.2 458 58.3
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 6.2e-137 491.5 463 58.3
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 6.7e-123 444.9 461 60.5
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 1.7e-121 440.3 459 60.1
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 3.2e-117 426.0 448 59.4
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 4.2e-117 425.6 451 59.9
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 1.4e-115 420.6 467 53.3
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 5.1e-115 418.7 459 57.5
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 6.7e-115 418.3 456 58.8
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 6.7e-115 418.3 456 58.1
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 1.1e-114 417.5 456 57.7
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 2.0e-114 416.8 466 57.3
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.6e-114 416.4 461 56.6
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 3.3e-114 416.0 459 50.5
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 3.3e-114 416.0 458 57.6
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 4.4e-114 415.6 460 57.8
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.1e-112 411.0 424 52.4
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 1.1e-112 411.0 458 58.1
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 1.4e-112 410.6 458 56.8
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 1.8e-112 410.2 457 57.5
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 3.1e-112 409.5 460 57.0
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 4.1e-112 409.1 466 56.4
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 9.1e-112 407.9 478 50.4
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 1.2e-111 407.5 456 57.9
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 1.2e-111 407.5 458 56.3
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.6e-111 406.4 458 53.3
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 7.7e-111 404.8 485 53.6
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 1.3e-110 404.1 503 47.5
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 1.3e-110 404.1 467 57.0
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 2.2e-110 403.3 465 50.5
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 2.9e-110 402.9 457 51.2
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 5.0e-110 402.1 477 47.6
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 5.0e-110 402.1 461 56.6
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.5e-110 401.7 461 56.6
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 1.1e-109 401.0 480 52.5
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 1.4e-109 400.6 463 50.3
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 5.5e-109 398.7 463 49.7
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 9.4e-109 397.9 394 62.2
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 1.2e-108 397.5 435 52.4
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 1.8e-107 393.7 459 56.0
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 2.3e-107 393.3 454 55.5
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 6.7e-107 391.7 457 55.4
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 4.4e-106 389.0 459 48.4
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 9.7e-106 387.9 535 44.3
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 1.7e-105 387.1 390 62.3
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 3.7e-105 386.0 396 60.4
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 6.3e-105 385.2 463 47.7
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 8.2e-105 384.8 465 54.6
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 5.3e-104 382.1 469 47.1
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 4.5e-103 379.0 483 51.6
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 7.7e-103 378.3 488 46.5
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 7.7e-103 378.3 467 54.6
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.3e-102 377.5 454 55.1
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 1.7e-102 377.1 487 48.5
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 1.7e-102 377.1 484 46.7
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 5.0e-102 375.6 554 42.8
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 6.5e-102 375.2 391 59.8
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.9e-101 373.6 484 51.4
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 1.9e-101 373.6 480 52.3
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 2.5e-101 373.2 483 51.6
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 3.2e-101 372.9 461 46.6
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 9.4e-101 371.3 381 52.2
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 1.2e-100 370.9 438 47.0
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 1.2e-100 370.9 438 47.0
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 2.1e-100 370.2 470 45.3
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 1.0e-99 367.9 445 46.5
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 4.0e-99 365.9 486 53.1
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 1.2e-98 364.4 506 45.1
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 9.7e-98 361.3 495 49.5
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 1.3e-97 360.9 465 44.9
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.3e-97 360.9 408 56.9
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.7e-97 360.5 453 47.2
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 1.8e-96 357.1 435 47.8
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 1.8e-96 357.1 435 52.6
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 7.0e-96 355.1 431 57.8
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 9.1e-96 354.8 426 47.7
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 9.1e-96 354.8 380 50.8
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 2.0e-95 353.6 409 52.8
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 7.7e-95 351.7 465 48.4
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.0e-94 351.3 424 54.2
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 1.3e-94 350.9 380 51.1
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.7e-94 350.5 483 46.6
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 5.0e-94 349.0 381 51.4
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 4.7e-92 342.4 384 52.9
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 4.0e-91 339.3 458 44.8
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 4.0e-91 339.3 383 49.6
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.5e-90 337.4 411 48.7
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.5e-90 337.4 458 44.1
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 2.0e-90 337.0 391 48.8
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 2.0e-90 337.0 510 39.6
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 2.8e-89 333.2 445 45.2
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 8.3e-89 331.6 381 52.2
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 8.6e-86 321.6 381 51.4
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 1.1e-85 321.2 381 51.4
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 1.9e-85 320.5 381 49.1
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 2.1e-84 317.0 422 52.8
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 2.8e-84 316.6 491 43.2
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.8e-81 306.6 395 52.9
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 8.3e-81 305.1 403 52.4
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 1.3e-78 297.7 329 59.3
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 1.7e-78 297.4 406 50.7
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.0e-74 283.9 378 43.9
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.7e-70 270.8 383 51.2
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 4.6e-63 246.1 411 41.6
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 1.3e-62 244.6 495 43.6
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 8.9e-59 231.9 387 39.5
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 4.4e-58 229.6 419 39.6
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 2.2e-57 227.3 279 49.1
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 6.8e-51 205.7 226 69.0
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 4.4e-50 203.0 217 56.7
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 6.0e-47 192.6 236 50.8
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 1.3e-46 191.4 214 53.7
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 6.2e-44 182.6 184 56.5
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 5.3e-43 179.5 400 32.0
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 5.4e-40 169.5 263 40.7
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 1.0e-38 165.2 203 46.3
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 1.0e-38 165.2 149 55.7
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 3.0e-38 163.7 112 67.9
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 8.7e-38 162.2 207 43.0
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.6e-37 159.5 396 42.2
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.6e-37 159.5 396 42.2
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 4.0e-35 153.3 118 61.9
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 5.4e-32 142.9 457 27.4
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 1.1e-27 128.6 116 59.5
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 1.3e-25 121.7 81 67.9
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.5e-24 117.5 81 65.4
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 2.7e-23 114.0 75 69.3
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 2.8e-20 104.0 469 26.0
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 2.6e-18 97.4 85 56.5
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 5.0e-17 93.2 67 62.7
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 6.5e-17 92.8 84 56.0
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 7.9e-15 85.9 213 31.5
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 2.3e-14 84.3 72 48.6
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 1.6e-12 78.2 39 79.5
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 2.4e-11 74.3 65 76.9
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 9.0e-11 72.4 435 26.4
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 1.7e-09 68.2 76 51.3
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 8.5e-09 65.9 354 19.8
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 5.1e-06 56.6 111 35.1
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 5.1e-06 56.6 111 35.1


User provided reference genes

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