Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 3.0e-176 621.7 302 100.0
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.3e-126 456.8 317 73.8
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.9e-122 443.0 305 71.5
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 5.5e-122 441.4 305 71.5
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.8e-110 402.5 305 65.2
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 1.5e-108 396.7 291 67.0
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 2.5e-106 389.4 294 64.3
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.6e-105 386.7 293 63.5
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 2.7e-105 386.0 312 60.9
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 4.7e-105 385.2 294 62.9
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 6.1e-105 384.8 293 63.5
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.0e-104 384.0 302 61.6
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.4e-104 383.6 302 61.3
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 3.0e-104 382.5 292 62.3
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 8.8e-104 380.9 293 63.1
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 8.8e-104 380.9 293 63.1
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 2.6e-103 379.4 296 64.2
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 2.6e-103 379.4 293 62.5
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.3e-103 379.0 293 62.5
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 5.7e-103 378.3 293 63.1
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 7.4e-103 377.9 293 62.8
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 1.3e-102 377.1 293 63.1
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.3e-102 377.1 303 62.0
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.7e-102 376.7 296 63.5
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.8e-102 375.9 294 64.6
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 4.8e-102 375.2 294 64.6
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.8e-101 373.2 295 65.1
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.4e-101 372.9 302 59.3
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 2.4e-101 372.9 291 61.2
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 3.1e-101 372.5 293 61.8
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 7.0e-101 371.3 292 62.7
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.6e-100 369.4 303 60.1
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 7.7e-100 367.9 285 62.1
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 8.5e-99 364.4 302 60.9
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 1.5e-98 363.6 308 58.8
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.5e-98 362.8 307 60.3
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 3.2e-98 362.5 313 56.9
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 4.2e-98 362.1 295 61.7
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 4.2e-98 362.1 294 60.5
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 5.5e-98 361.7 294 59.9
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 5.5e-98 361.7 308 58.4
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 9.4e-98 360.9 292 60.6
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.2e-97 360.5 281 62.6
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.2e-97 360.5 277 62.8
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 2.1e-97 359.8 294 60.5
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 3.6e-97 359.0 313 56.2
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.6e-97 359.0 305 59.0
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 4.7e-97 358.6 312 57.1
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 8.0e-97 357.8 288 61.5
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.0e-96 357.5 290 61.0
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.4e-96 357.1 295 61.4
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 2.3e-96 356.3 299 59.9
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 3.0e-96 355.9 308 58.4
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 4.0e-96 355.5 288 60.4
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 5.2e-96 355.1 291 59.8
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 6.8e-96 354.8 292 60.3
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 8.8e-96 354.4 305 58.0
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 8.8e-96 354.4 305 58.0
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 8.8e-96 354.4 263 63.5
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.0e-95 353.2 303 57.4
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 2.0e-95 353.2 293 59.7
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 3.4e-95 352.4 296 58.4
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.4e-95 352.1 289 60.6
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 4.4e-95 352.1 293 59.7
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 5.7e-95 351.7 288 59.7
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.7e-95 351.7 294 61.2
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 7.5e-95 351.3 292 60.6
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.3e-94 350.5 291 60.5
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.3e-94 350.5 287 60.3
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.7e-94 350.1 266 63.5
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.2e-94 349.7 286 62.9
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 2.2e-94 349.7 292 59.9
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.2e-94 349.7 305 59.0
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.8e-94 349.4 296 60.1
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 2.8e-94 349.4 290 58.6
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.8e-94 349.4 297 62.0
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 3.7e-94 349.0 288 60.1
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 3.7e-94 349.0 305 57.4
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 6.3e-94 348.2 294 58.5
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 6.3e-94 348.2 294 59.5
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.4e-93 347.1 315 57.1
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 3.1e-93 345.9 286 61.2
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 3.1e-93 345.9 277 61.0
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 3.1e-93 345.9 286 61.9
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.1e-93 345.9 294 58.2
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 4.1e-93 345.5 291 58.8
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 4.1e-93 345.5 290 58.6
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 5.4e-93 345.1 302 57.3
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 5.4e-93 345.1 291 59.5
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 7.0e-93 344.7 291 59.5
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 9.1e-93 344.4 291 60.1
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 2.0e-92 343.2 286 60.8
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 3.5e-92 342.4 285 60.4
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 3.5e-92 342.4 285 60.4
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 7.7e-92 341.3 306 57.2
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.3e-91 340.5 293 57.7
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 1.7e-91 340.1 294 58.5
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 2.2e-91 339.7 301 56.1
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 3.8e-91 339.0 294 57.5
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 5.0e-91 338.6 294 57.8
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 8.5e-91 337.8 301 58.1
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 1.1e-90 337.4 287 58.5
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 1.1e-90 337.4 301 58.1
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 1.9e-90 336.7 300 58.3
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.5e-90 336.3 291 59.1
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 4.2e-90 335.5 301 57.8
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 4.2e-90 335.5 301 57.8
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 4.2e-90 335.5 301 57.8
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 7.2e-90 334.7 296 57.8
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.6e-89 333.6 324 52.5
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.6e-89 333.6 319 54.2
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 1.4e-88 330.5 302 55.6
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.6e-87 326.2 306 53.3
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 5.7e-87 325.1 259 60.6
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 5.7e-87 325.1 293 54.3
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 1.3e-86 323.9 292 54.5
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.2e-86 323.2 291 54.6
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.8e-86 322.8 261 60.2
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 2.8e-86 322.8 298 54.7
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 3.5e-84 315.8 286 57.0
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.9e-82 310.1 332 50.3
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 5.2e-80 302.0 291 54.6
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 8.9e-80 301.2 296 54.4
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 1.3e-78 297.4 236 62.7
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.2e-78 296.6 210 68.1
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 8.3e-78 294.7 299 51.8
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 3.5e-76 289.3 290 53.1
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 1.2e-73 280.8 276 54.0
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 6.8e-72 275.0 281 54.4
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 3.5e-68 262.7 259 49.8
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.1e-52 210.3 222 51.8
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.3e-50 202.6 300 41.0
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 7.3e-50 201.8 309 40.8
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.8e-48 197.2 268 41.0
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 4.2e-45 186.0 290 38.6
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 2.3e-43 180.3 122 68.9
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.3e-41 174.5 182 51.6
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.9e-37 160.6 157 56.1
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 4.5e-31 139.4 132 58.3
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 1.0e-27 128.3 110 58.2
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.9e-27 126.3 99 58.6
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 8.7e-27 125.2 153 45.8
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.9e-26 124.0 106 60.4
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 4.3e-26 122.9 131 47.3
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 6.2e-25 119.0 100 54.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.1e-24 118.2 106 50.0
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 5.5e-13 79.3 72 56.9
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 4.6e-12 76.3 243 29.6
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.8e-09 66.2 43 67.4
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 2.6e-07 60.5 61 49.2


User provided reference genes

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