Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 2103.2 1045 100.0
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1563.9 1134 71.2
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1491.1 1137 67.5
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1450.3 1131 66.0
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1306.6 1136 59.7
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1293.1 1135 59.0
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1278.5 1137 57.0
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1276.2 1135 58.2
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1271.9 1134 57.2
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1263.8 1137 57.5
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1256.5 1132 57.0
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1255.7 1135 57.5
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1245.3 1135 57.3
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1237.2 1136 56.2
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1234.2 1137 55.9
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1231.9 1138 56.8
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1229.5 1139 56.3
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1227.6 1135 55.6
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1227.2 1136 55.6
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1224.2 1137 56.7
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1223.0 1135 55.3
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1219.9 1136 55.1
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1218.4 1089 57.6
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1213.4 1131 56.5
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1212.6 1143 54.9
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1205.3 1136 56.9
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1204.5 1146 55.6
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1202.2 1135 54.4
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1195.6 1344 50.0
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1192.9 1132 56.4
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1192.9 1134 54.2
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1192.2 1175 53.0
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1191.8 1114 54.8
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1188.3 1136 54.8
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1188.3 1133 53.9
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1187.6 1135 54.0
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1186.0 1135 53.9
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1182.2 1136 54.0
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1181.8 1129 54.1
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1181.4 1352 48.0
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1173.7 1136 54.4
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1172.9 1139 53.9
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1171.8 1136 54.3
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1161.7 1132 53.9
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1154.0 1133 53.6
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1153.7 1136 53.7
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1151.0 1134 52.8
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1150.6 1148 53.1
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1144.0 1139 53.3
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1134.8 1131 53.1
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1132.5 1134 52.2
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1130.2 1134 52.2
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1129.0 1141 53.4
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1126.3 1166 51.1
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1123.6 1141 52.5
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1123.2 1136 52.8
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1120.1 1131 52.3
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1120.1 1131 52.3
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1119.8 1126 52.6
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1118.2 1136 51.8
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1115.5 1131 52.2
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1112.4 1131 52.3
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1099.3 1175 50.9
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1097.4 1130 50.6
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1092.0 1036 55.7
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1090.1 1135 51.3
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1090.1 1076 53.9
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1085.5 1126 51.4
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1079.3 1080 52.6
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1075.8 1082 52.7
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 3.6e-311 1071.6 1134 50.3
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 3.6e-311 1071.6 1014 54.5
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 5.4e-310 1067.8 1076 53.1
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 1.0e-308 1063.5 1133 50.4
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 5.1e-308 1061.2 1052 52.9
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 1.1e-305 1053.5 1130 49.9
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 5.2e-305 1051.2 1139 49.6
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 5.1e-300 1034.6 1041 52.4
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 2.5e-291 1005.7 1178 47.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 1.6e-290 1003.0 1135 48.8
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 4.9e-287 991.5 1079 49.5
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 4.9e-287 991.5 1141 47.2
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 3.5e-285 985.3 1135 47.6
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 2.1e-282 976.1 1137 46.8
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 9.0e-281 970.7 1032 52.7
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 7.1e-270 934.5 1134 45.0
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 9.3e-270 934.1 713 65.1
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 3.3e-259 899.0 716 63.8
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 3.6e-253 879.0 1068 46.5
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.5e-227 793.9 753 55.0
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 4.9e-202 709.1 761 50.2
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 3.8e-186 656.4 715 50.3
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 2.8e-181 640.2 1162 35.7
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.1e-180 638.3 581 58.3
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 1.1e-158 565.1 1138 33.8
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.5e-155 554.7 607 49.1
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 3.7e-141 506.9 344 70.9
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.0e-135 488.8 1070 32.8
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 2.6e-123 447.6 734 38.1
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 6.1e-112 409.8 510 42.4
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 5.7e-110 403.3 388 54.9
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 3.3e-105 387.5 342 59.6
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 2.0e-102 378.3 439 48.5
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.3e-82 312.4 250 61.2
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.9e-77 294.7 336 43.8
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 3.9e-74 284.3 175 77.1
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 1.1e-65 256.1 143 85.3
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 6.9e-63 246.9 177 68.4
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 4.4e-62 244.2 204 59.8
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-46 192.6 636 27.5
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 2.2e-45 188.7 190 50.5
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 4.2e-44 184.5 216 43.1
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.4e-38 164.9 359 31.2
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.1e-31 143.3 121 62.8
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.0e-26 126.7 586 23.9
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 9.7e-25 120.2 145 42.8
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 3.2e-20 105.1 478 25.7
Cfa022114 Carpinus fangiana HOM05D005978 ORTHO05D007472 7.9e-19 100.5 759 20.3
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 1.1e-17 96.7 108 51.9
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 9.7e-17 93.6 57 75.4
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 4.1e-15 88.2 53 75.5
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 2.9e-13 82.0 115 42.6
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 3.0e-10 72.0 51 66.7
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 3.3e-09 68.6 42 69.0
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 7.5e-09 67.4 42 69.0
HanXRQChr05g0142631 Helianthus annuus HOM05D001310 ORTHO05D023385 4.1e-07 61.6 133 30.1
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 3.5e-06 58.5 67 53.7
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 7.7e-06 57.4 59 50.8


User provided reference genes

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