Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 2267.7 1154 100.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1734.2 1182 78.1
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1664.4 1102 79.0
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1625.5 1101 77.5
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1520.4 1095 72.0
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1508.8 1098 70.7
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1505.0 1092 71.3
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1502.6 1093 71.3
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1487.6 1103 70.6
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1483.0 984 77.4
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1474.9 1110 69.6
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1473.0 1094 69.8
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1471.8 1098 69.5
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1466.1 1100 69.0
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1463.4 1092 69.7
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1460.3 1119 69.2
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1458.4 1037 71.7
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1457.2 1100 69.5
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1456.0 1096 68.8
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1455.3 1099 69.2
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1453.7 1100 68.9
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1453.3 1026 72.1
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1453.3 1026 72.1
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1451.4 1099 68.2
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1449.5 1026 71.8
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1448.0 1106 68.9
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1443.3 1048 71.5
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1442.9 1099 68.6
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1439.1 1097 67.6
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1424.5 1132 67.2
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1424.5 1102 67.8
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1421.0 1097 68.5
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1418.3 1098 66.3
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1417.1 1096 67.2
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1416.0 1095 68.3
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1413.3 1093 67.2
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1413.3 1154 65.4
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1409.8 1099 66.8
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1408.7 1025 69.7
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1403.7 1103 65.7
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1403.3 1101 67.0
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1402.1 1111 66.6
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1395.2 1032 69.0
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1394.4 1098 66.4
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1394.0 1097 65.8
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1390.2 1093 66.6
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1390.2 1095 67.6
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1388.2 1096 65.7
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1386.3 1095 66.9
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1385.2 1089 66.2
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1382.9 1099 65.2
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1374.8 1095 67.0
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1366.7 1095 64.4
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1365.1 1104 65.5
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1363.6 983 70.7
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1362.8 1096 66.0
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1360.9 1093 65.7
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1359.0 1093 65.6
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1353.6 977 71.9
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1353.2 996 69.5
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1348.2 1115 64.5
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1347.8 1007 67.4
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1347.4 1109 63.8
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1345.5 1093 65.2
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1345.1 1094 65.2
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1337.4 963 75.2
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1332.0 1239 59.6
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1324.7 1101 64.3
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1322.4 1099 64.8
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1317.4 973 70.1
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1299.6 1215 59.8
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1297.0 1023 65.9
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1297.0 972 68.9
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1288.1 1043 64.4
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1287.3 1044 63.7
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1285.4 1091 62.7
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1276.2 1052 62.6
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1230.7 1134 59.6
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1187.2 1004 60.3
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1182.2 1096 59.8
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1144.4 926 66.0
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1138.3 893 67.5
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1137.5 1159 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1136.7 1051 57.2
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1128.2 1059 56.4
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1119.8 1051 56.6
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 2.9e-304 1048.9 1076 51.1
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 3.9e-301 1038.5 1100 55.3
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 1.7e-272 943.3 1037 50.0
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.3e-267 927.2 668 70.8
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.4e-263 913.7 1074 48.3
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 3.5e-262 909.1 1041 47.9
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 7.9e-262 907.9 766 62.0
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 4.4e-244 849.0 1023 48.0
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 4.7e-222 775.8 627 66.2
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.2e-220 771.2 602 67.8
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 4.9e-211 739.2 598 64.2
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.1e-199 701.4 508 71.3
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 5.2e-189 666.0 533 66.0
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 2.1e-177 627.5 496 65.7
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.5e-172 611.3 801 47.4
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 8.4e-171 605.5 647 53.8
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 5.6e-167 592.8 470 65.1
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 3.8e-163 580.1 424 67.9
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 8.7e-160 568.9 633 52.6
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 7.4e-159 565.8 397 74.8
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 2.0e-148 531.2 363 75.8
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.7e-129 467.6 348 72.7
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.2e-126 458.0 304 77.6
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 2.8e-126 457.6 351 67.5
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.2e-124 452.2 397 60.2
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 3.6e-121 440.7 416 58.2
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.6e-113 414.1 299 68.6
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-106 392.5 801 36.5
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.3e-102 376.7 196 90.3
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-88 332.8 231 69.7
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.0e-87 328.6 279 62.0
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.7e-83 315.5 216 73.1
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 1.8e-80 305.4 294 50.3
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 1.5e-63 249.2 147 85.0
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 2.3e-59 235.3 183 67.8
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.6e-57 229.2 169 71.6
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 6.2e-49 200.7 186 60.8
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.0e-43 183.3 148 61.5
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 3.9e-43 181.4 107 82.2
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.8e-33 147.9 112 60.7
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 1.1e-32 146.7 94 78.7
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 1.8e-32 146.0 170 49.4
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.3e-30 139.8 96 69.8
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.7e-30 139.4 124 57.3
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 5.0e-30 137.9 127 55.9
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 8.5e-30 137.1 120 53.3
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 3.0e-27 128.6 99 64.6
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.1e-26 126.7 123 60.2
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.1e-26 126.7 123 60.2
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 4.3e-26 124.8 90 64.4
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 6.3e-25 120.9 110 53.6
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.0e-22 113.6 136 52.2
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 6.5e-22 110.9 85 62.4
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 5.7e-18 97.8 73 65.8
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 9.7e-18 97.1 195 34.4
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.0e-16 90.9 69 60.9
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.0e-15 89.4 67 64.2
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 9.4e-13 80.5 120 44.2
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 2.7e-12 79.0 54 70.4
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.2e-09 69.3 50 66.0
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 1.8e-08 66.2 55 60.0
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 3.1e-08 65.5 60 58.3
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.0e-06 60.5 29 86.2


User provided reference genes

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