Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold336G49158 Striga asiatica HOM05D000451 ORTHO05D000022 4.2e-144 514.6 249 100.0
SGA_v2.0_scaffold192G40546 Striga asiatica HOM05D000451 ORTHO05D000351 5.3e-14 82.4 45 88.9
SGA_v2.0_scaffold44G16805 Striga asiatica HOM05D000451 ORTHO05D000351 7.0e-14 82.0 44 84.1
MSTRG.8652 Avicennia marina HOM05D000451 ORTHO05D000351 1.5e-11 74.3 45 71.1
Prupe.2G309900 Prunus persica HOM05D000451 ORTHO05D000351 5.5e-11 72.4 45 68.9
Dinv35337 Davidia involucrata HOM05D000451 ORTHO05D000351 7.2e-11 72.0 46 73.9
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 7.2e-11 72.0 47 76.6
SalBow4G2371 Salvia bowleyana HOM05D000451 ORTHO05D000351 3.6e-10 69.7 48 68.8
SGA_v2.0_scaffold9G04849 Striga asiatica HOM05D004783 ORTHO05D005581 4.7e-10 69.3 83 41.0
Cfa003794 Carpinus fangiana HOM05D000451 ORTHO05D000351 2.3e-09 67.0 46 63.0
Solyc03g083240.4 Solanum lycopersicum HOM05D000451 ORTHO05D000351 4.0e-09 66.2 46 63.0
Sopen03g022990 Solanum pennellii HOM05D000451 ORTHO05D000351 4.0e-09 66.2 46 63.0
Haze_00209 Corylus avellana HOM05D000451 ORTHO05D000351 6.7e-09 65.5 47 63.8
Duzib138G1623 Durio zibethinus HOM05D000451 ORTHO05D000351 6.7e-09 65.5 45 64.4
Lalb_Chr04g0264371 Lupinus albus HOM05D000451 ORTHO05D000351 6.7e-09 65.5 45 64.4
Hund11660 Selenicereus undatus HOM05D000451 ORTHO05D000351 6.7e-09 65.5 45 66.7
Mapoly0006s0033 Marchantia polymorpha HOM05D000451 ORTHO05D000351 8.8e-09 65.1 44 68.2
CAN.G481.7 Capsicum annuum HOM05D000451 ORTHO05D000351 1.2e-08 64.7 46 63.0
GSVIVG01027160001 Vitis vinifera HOM05D000451 ORTHO05D000351 1.2e-08 64.7 46 58.7
CSS0000872 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 1.5e-08 64.3 46 65.2
CSS0012036 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 1.5e-08 64.3 46 65.2
Nitab4.5_0000548g0120 Nicotiana tabacum HOM05D000451 ORTHO05D000351 1.5e-08 64.3 45 66.7
Nitab4.5_0007167g0010 Nicotiana tabacum HOM05D000451 ORTHO05D000351 1.5e-08 64.3 45 66.7
RcHm_v2.0_Chr1g0359841 Rosa chinensis HOM05D000451 ORTHO05D000351 1.5e-08 64.3 45 64.4
Thecc.03G199100 Theobroma cacao HOM05D000451 ORTHO05D000351 1.5e-08 64.3 46 63.0
MD01G1218500 Malus domestica HOM05D000451 ORTHO05D000351 2.0e-08 63.9 44 65.9
Thecc.01G341300 Theobroma cacao HOM05D000451 ORTHO05D000351 2.0e-08 63.9 46 60.9
Manes.02G144000 Manihot esculenta HOM05D000451 ORTHO05D000351 2.6e-08 63.5 46 63.0
ATR0602G003 Amborella trichopoda HOM05D000451 ORTHO05D000351 3.3e-08 63.2 46 63.0
Cpa.g.sc96.28 Carica papaya HOM05D000451 ORTHO05D000351 3.3e-08 63.2 46 58.7
Ciclev10018464m.g Citrus clementina HOM05D000451 ORTHO05D000351 3.3e-08 63.2 46 60.9
Lsat_1_v5_gn_8_5201 Lactuca sativa HOM05D001465 ORTHO05D001434 3.3e-08 63.2 44 65.9
Prupe.2G189600 Prunus persica HOM05D000451 ORTHO05D000351 3.3e-08 63.2 46 60.9
vmacro12672 Vaccinium macrocarpon HOM05D000451 ORTHO05D000351 3.3e-08 63.2 46 60.9
Actinidia06148 Actinidia chinensis HOM05D000451 ORTHO05D000351 4.4e-08 62.8 46 65.2
Lj1g0016620 Lotus japonicus HOM05D000451 ORTHO05D000351 4.4e-08 62.8 46 58.7
Medtr7g117445 Medicago truncatula HOM05D000451 ORTHO05D000351 4.4e-08 62.8 46 58.7
QL09p008892 Quercus lobata HOM05D000451 ORTHO05D000351 4.4e-08 62.8 45 64.4
QL09p009135 Quercus lobata HOM05D000451 ORTHO05D000351 4.4e-08 62.8 45 64.4
Sabra15G0010400 Salix brachista HOM05D000451 ORTHO05D000351 4.4e-08 62.8 46 58.7
TAR374G0411 Trochodendron aralioides HOM05D000451 ORTHO05D000351 4.4e-08 62.8 45 62.2
EL10Ac3g05282 Beta vulgaris HOM05D000451 ORTHO05D000351 5.7e-08 62.4 45 62.2
FvH4_7g31570 Fragaria vesca HOM05D000451 ORTHO05D000351 5.7e-08 62.4 45 60.0
FAN10G0215 Fragaria x ananassa HOM05D000451 ORTHO05D000351 5.7e-08 62.4 45 60.0
FAN10G0575 Fragaria x ananassa HOM05D000451 ORTHO05D000351 5.7e-08 62.4 45 60.0
HanXRQChr13g0392641 Helianthus annuus HOM05D000451 ORTHO05D000351 5.7e-08 62.4 44 68.2
TPR.G4792 Trifolium pratense HOM05D000451 ORTHO05D000351 5.7e-08 62.4 45 60.0
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 5.7e-08 62.4 44 61.4
Aqoxy7G00074 Aquilegia oxysepala HOM05D000451 ORTHO05D000351 7.5e-08 62.0 45 64.4
Cc02_g01520 Coffea canephora HOM05D000451 ORTHO05D000351 7.5e-08 62.0 45 62.2
DCAR_014547 Daucus carota HOM05D000451 ORTHO05D000351 7.5e-08 62.0 45 60.0
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 7.5e-08 62.0 52 55.8
Ca_09512_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 9.7e-08 61.6 46 58.7
Ca_30062_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 9.7e-08 61.6 46 58.7
FvH4_7g16681 Fragaria vesca HOM05D000451 ORTHO05D000351 9.7e-08 61.6 45 60.0
FAN03G2461 Fragaria x ananassa HOM05D000451 ORTHO05D000351 9.7e-08 61.6 45 60.0
FAN06G2298 Fragaria x ananassa HOM05D000451 ORTHO05D000351 9.7e-08 61.6 45 60.0
FAN06G4904 Fragaria x ananassa HOM05D000451 ORTHO05D000351 9.7e-08 61.6 45 60.0
FAN10G0805 Fragaria x ananassa HOM05D000451 ORTHO05D000351 9.7e-08 61.6 45 60.0
FAN10G2050 Fragaria x ananassa HOM05D000451 ORTHO05D000351 9.7e-08 61.6 45 60.0
QL04p060538 Quercus lobata HOM05D000451 ORTHO05D000351 9.7e-08 61.6 46 60.9
Rhsim01G0173100 Rhododendron simsii HOM05D000451 ORTHO05D000351 9.7e-08 61.6 46 58.7
RcHm_v2.0_Chr1g0380571 Rosa chinensis HOM05D000451 ORTHO05D000351 9.7e-08 61.6 44 63.6
TWI59G0660 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 9.7e-08 61.6 45 60.0
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.3e-07 61.2 46 63.0
Duzib205G0305 Durio zibethinus HOM05D000451 ORTHO05D000351 1.3e-07 61.2 45 60.0
Thhalv10028389m.g Eutrema salsugineum HOM05D000451 ORTHO05D000351 1.3e-07 61.2 45 62.2
vmacro10122 Vaccinium macrocarpon HOM05D000451 ORTHO05D000351 1.3e-07 61.2 46 63.0
COL.COLO4_16765 Corchorus olitorius HOM05D000451 ORTHO05D000351 1.7e-07 60.8 46 58.7
FAN01G1562 Fragaria x ananassa HOM05D000451 ORTHO05D000351 2.2e-07 60.5 45 60.0
Gohir.A12G249800 Gossypium hirsutum HOM05D000451 ORTHO05D000351 2.2e-07 60.5 46 58.7
Gohir.D12G250600 Gossypium hirsutum HOM05D000451 ORTHO05D000351 2.2e-07 60.5 46 58.7
Gorai.008G268700 Gossypium raimondii HOM05D000451 ORTHO05D000351 2.2e-07 60.5 46 58.7
Ah.13g070340 Amaranthus hybridus HOM05D000451 ORTHO05D000351 2.8e-07 60.1 44 61.4
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 2.8e-07 60.1 46 56.5
MD01G1082300 Malus domestica HOM05D000451 ORTHO05D000351 2.8e-07 60.1 45 62.2
PSO017G1235 Papaver somniferum HOM05D000451 ORTHO05D000351 2.8e-07 60.1 45 62.2
GSVIVG01038553001 Vitis vinifera HOM05D000451 ORTHO05D000351 2.8e-07 60.1 46 56.5
Actinidia28115 Actinidia chinensis HOM05D000451 ORTHO05D000351 3.7e-07 59.7 46 60.9
arahy.Tifrunner.gnm1.ann1.T50NSM Arachis hypogaea HOM05D000451 ORTHO05D000351 3.7e-07 59.7 45 57.8
AUR62006088 Chenopodium quinoa HOM05D000451 ORTHO05D000351 3.7e-07 59.7 45 60.0
Gohir.A11G097300 Gossypium hirsutum HOM05D000451 ORTHO05D000351 3.7e-07 59.7 45 57.8
Gohir.D11G102101 Gossypium hirsutum HOM05D000451 ORTHO05D000351 3.7e-07 59.7 45 57.8
Gorai.007G109100 Gossypium raimondii HOM05D000451 ORTHO05D000351 3.7e-07 59.7 45 57.8
Potri.015G012800 Populus trichocarpa HOM05D000451 ORTHO05D000351 4.8e-07 59.3 44 59.1
Atru.chr12.2197 Acer truncatum HOM05D000451 ORTHO05D000351 6.3e-07 58.9 46 58.7
Ca_12797_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 6.3e-07 58.9 44 61.4
Lj1g0006343 Lotus japonicus HOM05D000451 ORTHO05D000351 6.3e-07 58.9 44 59.1
Psat3g002200 Pisum sativum HOM05D000451 ORTHO05D000351 6.3e-07 58.9 46 54.3
Migut.F00211 Erythranthe guttata HOM05D000451 ORTHO05D000351 8.2e-07 58.5 45 57.8
Eucgr.K00384 Eucalyptus grandis HOM05D000451 ORTHO05D000351 8.2e-07 58.5 45 60.0
FAN01G2821 Fragaria x ananassa HOM05D000451 ORTHO05D000351 8.2e-07 58.5 45 60.0
Lalb_Chr04g0261491 Lupinus albus HOM05D000451 ORTHO05D000351 8.2e-07 58.5 46 56.5
Cpa.g.sc3.87 Carica papaya HOM05D000451 ORTHO05D000351 1.1e-06 58.2 45 60.0
Oeu037060.1 Olea europaea HOM05D000451 ORTHO05D000351 1.4e-06 57.8 45 60.0
Pp3c14_6480 Physcomitrium patens HOM05D000451 ORTHO05D000351 1.4e-06 57.8 44 59.1
CsaV3_3G008010 Cucumis sativus L. HOM05D000451 ORTHO05D000351 1.8e-06 57.4 45 62.2
ECA233G2018 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.8e-06 57.4 44 59.1
MBI07_g40677_MAGBIO Magnolia biondii HOM05D000451 ORTHO05D000351 1.8e-06 57.4 45 55.6
Peaxi162Scf00740g00019 Petunia axillaris HOM05D000451 ORTHO05D000351 1.8e-06 57.4 45 64.4
Psat6g035400 Pisum sativum HOM05D000451 ORTHO05D000351 1.8e-06 57.4 44 61.4
AUR62040879 Chenopodium quinoa HOM05D000003 ORTHO05D000022 2.4e-06 57.0 132 31.8
Pp3c17_5410 Physcomitrium patens HOM05D000451 ORTHO05D000351 2.4e-06 57.0 44 61.4
SEGI_06129 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 2.4e-06 57.0 43 60.5
FAN03G1585 Fragaria x ananassa HOM05D000451 ORTHO05D000351 3.1e-06 56.6 45 60.0
FAN06G1966 Fragaria x ananassa HOM05D000451 ORTHO05D000351 3.1e-06 56.6 45 60.0
FAN06G5046 Fragaria x ananassa HOM05D000451 ORTHO05D000351 3.1e-06 56.6 45 60.0
SEGI_01523 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 3.1e-06 56.6 43 62.8
Carub.0006s3601 Capsella rubella HOM05D000451 ORTHO05D000351 4.1e-06 56.2 45 55.6
CARHR249370 Cardamine hirsuta HOM05D000451 ORTHO05D000351 5.3e-06 55.8 45 55.6
MELO3C006019.2 Cucumis melo HOM05D000451 ORTHO05D000351 5.3e-06 55.8 45 60.0
Lj1A1235T93 Lonicera japonica HOM05D000451 ORTHO05D000351 5.3e-06 55.8 44 54.5
TWI14G0276 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 5.3e-06 55.8 46 54.3
Thhalv10029199m.g Eutrema salsugineum HOM05D000451 ORTHO05D000351 7.0e-06 55.5 45 55.6
Nitab4.5_0003096g0040 Nicotiana tabacum HOM05D000451 ORTHO05D000351 7.0e-06 55.5 44 61.4
Pp3c16_210 Physcomitrium patens HOM05D000451 ORTHO05D000351 7.0e-06 55.5 44 52.3
Atru.chr12.2204 Acer truncatum HOM05D000451 ORTHO05D000351 9.1e-06 55.1 46 50.0
A03p31730 Brassica napus HOM05D000451 ORTHO05D000351 9.1e-06 55.1 45 55.6
BraA03t12350Z Brassica rapa HOM05D000451 ORTHO05D000351 9.1e-06 55.1 45 55.6
Medtr1g008060 Medicago truncatula HOM05D000451 ORTHO05D000351 9.1e-06 55.1 44 61.4


User provided reference genes

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