Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 0.0e+00 1175.6 599 100.0
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 9.1e-286 986.5 601 84.0
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.6e-269 932.6 599 78.8
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 4.0e-265 917.9 599 78.3
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 6.8e-265 917.1 601 77.4
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 7.0e-254 880.6 604 75.7
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 2.0e-253 879.0 609 72.9
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 3.6e-250 868.2 620 71.9
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 4.7e-250 867.8 603 74.3
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.0e-249 866.7 605 73.2
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 4.0e-249 864.8 602 74.4
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 3.4e-248 861.7 609 73.4
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.3e-247 857.1 602 72.6
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 2.4e-246 855.5 610 72.3
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 7.8e-245 850.5 628 70.1
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.7e-244 849.4 600 72.2
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 4.3e-243 844.7 608 71.5
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 5.6e-243 844.3 606 71.5
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.8e-242 842.0 607 72.5
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.3e-241 839.0 606 71.8
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 2.0e-240 835.9 607 71.8
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 2.0e-240 835.9 598 72.1
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 2.6e-240 835.5 600 72.3
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.4e-240 835.1 606 71.0
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 4.9e-239 831.2 607 71.3
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.9e-238 829.3 609 70.3
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 5.4e-238 827.8 601 71.0
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.7e-236 822.8 642 68.4
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 6.6e-236 820.8 595 70.9
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.4e-233 813.1 606 69.6
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 6.8e-233 810.8 605 69.8
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 4.9e-231 804.7 611 68.1
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 2.7e-229 798.9 602 68.9
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 3.5e-229 798.5 608 68.9
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 5.1e-228 794.7 604 69.2
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 8.6e-228 793.9 596 67.1
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 2.1e-226 789.3 587 70.4
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 3.6e-226 788.5 597 68.3
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 6.2e-226 787.7 595 66.6
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.8e-225 786.2 599 67.6
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.0e-224 782.7 603 66.7
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.6e-224 782.3 598 67.7
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.6e-224 782.3 600 67.5
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 5.8e-224 781.2 597 67.7
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 7.6e-224 780.8 601 67.2
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 7.6e-224 780.8 608 66.4
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.4e-222 776.5 605 66.9
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 2.4e-222 775.8 601 66.7
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 7.1e-222 774.2 613 65.6
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 9.3e-222 773.9 599 66.4
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 1.6e-221 773.1 597 66.2
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 7.8e-221 770.8 619 65.3
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.0e-220 770.4 604 65.2
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.0e-220 770.4 604 65.7
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 3.0e-220 768.8 606 65.5
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 3.9e-220 768.5 604 66.4
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 6.6e-220 767.7 607 64.6
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 8.7e-220 767.3 602 66.1
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 2.5e-219 765.8 604 65.6
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 7.3e-219 764.2 571 68.1
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.3e-218 763.5 544 73.5
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 4.8e-218 761.5 584 66.6
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 6.2e-218 761.1 599 65.6
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.8e-217 759.6 599 65.6
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.4e-217 759.2 600 65.2
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 5.3e-217 758.1 606 65.2
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.5e-216 756.5 599 65.4
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 2.6e-216 755.7 594 65.3
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 5.8e-216 754.6 604 64.1
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 2.9e-215 752.3 607 65.4
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.9e-214 749.6 600 64.2
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 3.2e-214 748.8 620 63.7
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 4.2e-214 748.4 599 64.6
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 4.6e-213 745.0 599 64.1
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 4.6e-213 745.0 603 64.3
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 2.3e-212 742.7 600 63.8
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.1e-211 740.3 610 64.9
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.9e-211 739.6 607 63.8
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 9.6e-211 737.3 560 67.1
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 2.8e-210 735.7 606 63.4
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 8.1e-210 734.2 607 63.3
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.1e-209 733.8 606 63.0
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 2.4e-209 732.6 528 71.6
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 5.8e-208 728.0 602 62.0
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 1.2e-205 720.3 598 63.7
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 2.7e-205 719.2 600 62.5
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 3.5e-205 718.8 612 61.4
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.1e-203 713.8 603 62.2
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.1e-203 713.8 602 62.6
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 1.4e-201 706.8 612 62.1
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.8e-201 706.4 604 63.1
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 9.0e-201 704.1 605 61.2
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.5e-200 703.4 618 60.4
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 7.6e-200 701.0 607 61.0
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.0e-199 700.7 599 60.9
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.4e-198 696.8 600 61.0
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.5e-198 696.0 605 61.2
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 3.2e-198 695.7 602 60.1
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 5.5e-198 694.9 600 60.8
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 9.3e-198 694.1 523 66.9
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 9.3e-198 694.1 607 61.3
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 1.2e-197 693.7 607 60.0
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.6e-197 693.3 593 62.7
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 7.9e-197 691.0 604 61.8
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 5.1e-196 688.3 610 60.8
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 8.7e-196 687.6 604 61.4
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.7e-196 687.6 604 61.4
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.7e-194 682.2 604 60.9
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.0e-193 678.7 604 60.8
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 7.6e-192 674.5 605 59.7
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 2.1e-189 666.4 599 59.3
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.7e-189 666.0 584 60.4
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 3.5e-189 665.6 608 60.5
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.5e-187 659.4 594 58.1
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.8e-183 645.6 599 57.8
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 8.8e-180 634.4 603 55.9
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 4.5e-176 622.1 598 57.0
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 3.7e-170 602.4 605 56.0
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 4.1e-169 599.0 603 54.2
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 5.9e-168 595.1 593 53.1
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 5.7e-163 578.6 600 52.2
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.6e-160 570.5 621 50.7
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.9e-160 568.5 444 65.3
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.5e-150 537.3 471 60.3
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 7.2e-150 535.0 594 50.3
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 1.7e-146 523.9 397 70.8
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.6e-136 490.7 591 47.7
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.4e-129 465.7 329 72.9
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 3.3e-118 429.9 462 49.6
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 8.1e-117 425.2 506 47.8
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 7.6e-115 418.7 635 40.3
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 7.3e-110 402.1 314 66.2
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-109 401.0 357 60.8
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.1e-109 400.6 606 41.4
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 9.9e-107 391.7 362 60.5
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 7.6e-83 312.4 327 54.7
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 5.5e-81 306.2 662 32.3
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.9e-73 281.2 538 35.3
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 3.8e-66 256.9 188 71.3
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 7.2e-65 252.7 218 57.3
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 5.1e-63 246.5 215 61.9
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.3e-62 243.8 166 70.5
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.1e-55 219.9 135 75.6
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 3.6e-48 197.2 371 38.8
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 5.9e-43 179.9 119 69.7
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.3e-37 162.2 115 66.1
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.7e-37 161.8 115 66.1
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 6.3e-37 159.8 130 61.5
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 4.7e-32 143.7 177 51.4
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 4.4e-30 137.1 128 58.6
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 6.3e-29 133.3 80 77.5
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.3e-29 132.9 97 70.1
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.4e-28 131.3 97 69.1
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 1.3e-26 125.6 221 40.3
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.3e-26 125.6 93 64.5
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 4.7e-24 117.1 87 66.7
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 9.8e-22 109.4 107 59.8
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 3.5e-19 100.9 130 48.5
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 2.3e-18 98.2 124 53.2
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 9.5e-17 92.8 60 68.3
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 3.2e-12 77.8 74 54.1
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.6e-11 75.5 56 62.5
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 3.3e-09 67.8 41 75.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 6.2e-08 63.5 34 85.3
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.2e-06 59.3 35 80.0
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 7.5e-06 56.6 45 51.1


User provided reference genes

Program Settings