Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13108 Striga asiatica HOM05D002360 ORTHO05D406359 6.9e-64 247.3 138 100.0
Migut.I01145 Erythranthe guttata HOM05D002360 ORTHO05D006971 2.9e-09 65.9 40 82.5
SGA_v2.0_scaffold4G02100 Striga asiatica HOM05D002360 ORTHO05D006971 3.7e-09 65.5 40 82.5
CDE07G0903 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 1.1e-08 63.9 40 80.0
SGA_v2.0_scaffold37G14644 Striga asiatica HOM05D002360 ORTHO05D006971 1.1e-08 63.9 45 73.3
CSS0024321 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 2.4e-08 62.8 40 77.5
CSS0045415 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 2.4e-08 62.8 40 77.5
CDE06G2307 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 2.4e-08 62.8 40 77.5
Hma1.2p1_1104F.1_g257530 Hydrangea macrophylla HOM05D002360 ORTHO05D006971 2.4e-08 62.8 40 77.5
Rhsim12G0213700 Rhododendron simsii HOM05D002360 ORTHO05D006971 5.4e-08 61.6 40 75.0
COL.COLO4_35973 Corchorus olitorius HOM05D002360 ORTHO05D006971 7.1e-08 61.2 41 73.2
GSVIVG01016650001 Vitis vinifera HOM05D002360 ORTHO05D006971 7.1e-08 61.2 40 75.0
Aqoxy7G00909 Aquilegia oxysepala HOM05D002360 ORTHO05D006971 9.2e-08 60.8 40 75.0
CAN.G790.47 Capsicum annuum HOM05D002360 ORTHO05D006971 9.2e-08 60.8 40 75.0
Gohir.A10G132000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 9.2e-08 60.8 40 72.5
Nitab4.5_0006338g0050 Nicotiana tabacum HOM05D002360 ORTHO05D006971 9.2e-08 60.8 40 75.0
SalBow6G3918 Salvia bowleyana HOM05D002360 ORTHO05D006971 9.2e-08 60.8 40 77.5
TAR371G0365 Trochodendron aralioides HOM05D002360 ORTHO05D006971 9.2e-08 60.8 40 75.0
Atru.chr3.1763 Acer truncatum HOM05D002360 ORTHO05D006971 1.2e-07 60.5 40 75.0
MSTRG.10902 Avicennia marina HOM05D002360 ORTHO05D006971 1.2e-07 60.5 40 75.0
Cc04_g00540 Coffea canephora HOM05D002360 ORTHO05D006971 1.2e-07 60.5 40 72.5
Eucgr.H02625 Eucalyptus grandis HOM05D002360 ORTHO05D006971 1.2e-07 60.5 40 72.5
Nitab4.5_0004950g0020 Nicotiana tabacum HOM05D002360 ORTHO05D006971 1.2e-07 60.5 40 75.0
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 1.2e-07 60.5 40 72.5
Sc15g0000870 Simmondsia chinensis HOM05D002360 ORTHO05D006971 1.2e-07 60.5 40 75.0
Actinidia31141 Actinidia chinensis HOM05D002360 ORTHO05D006971 1.6e-07 60.1 40 75.0
CiPaw.01G111500 Carya illinoinensis HOM05D002360 ORTHO05D006971 1.6e-07 60.1 40 72.5
Nn6g31492 Nelumbo nucifera HOM05D002360 ORTHO05D006971 1.6e-07 60.1 40 75.0
unitig_747.g21723 Utricularia gibba HOM05D002360 ORTHO05D006971 1.6e-07 60.1 40 75.0
Actinidia25995 Actinidia chinensis HOM05D002360 ORTHO05D006971 2.1e-07 59.7 40 72.5
Ciclev10005632m.g Citrus clementina HOM05D002360 ORTHO05D006971 2.1e-07 59.7 40 72.5
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 2.1e-07 59.7 40 72.5
Peaxi162Scf00038g02444 Petunia axillaris HOM05D002360 ORTHO05D006971 2.1e-07 59.7 40 72.5
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 2.1e-07 59.7 40 72.5
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 2.1e-07 59.7 40 72.5
RcHm_v2.0_Chr4g0411571 Rosa chinensis HOM05D002360 ORTHO05D006971 2.1e-07 59.7 40 72.5
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 2.1e-07 59.7 40 72.5
Duzib151G1143 Durio zibethinus HOM05D002360 ORTHO05D006971 2.7e-07 59.3 40 70.0
Duzib212G0167 Durio zibethinus HOM05D002360 ORTHO05D006971 2.7e-07 59.3 40 70.0
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 3.5e-07 58.9 40 70.0
Gohir.D10G135000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 3.5e-07 58.9 40 70.0
Gorai.011G149900 Gossypium raimondii HOM05D002360 ORTHO05D006971 3.5e-07 58.9 40 70.0
Os03g0184000 Oryza sativa ssp. japonica HOM05D002360 ORTHO05D006971 3.5e-07 58.9 40 72.5
PSO135G0108 Papaver somniferum HOM05D002360 ORTHO05D006971 3.5e-07 58.9 40 72.5
PSO135G0985 Papaver somniferum HOM05D002360 ORTHO05D006971 3.5e-07 58.9 40 72.5
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 3.5e-07 58.9 40 70.0
Potri.002G235200 Populus trichocarpa HOM05D002360 ORTHO05D006971 3.5e-07 58.9 40 72.5
vmacro17066 Vaccinium macrocarpon HOM05D002360 ORTHO05D006971 3.5e-07 58.9 40 72.5
Ah.15g094770 Amaranthus hybridus HOM05D002360 ORTHO05D006971 4.6e-07 58.5 40 72.5
EL10Ac7g18238 Beta vulgaris HOM05D002360 ORTHO05D006971 4.6e-07 58.5 40 72.5
AUR62001382 Chenopodium quinoa HOM05D002360 ORTHO05D006971 4.6e-07 58.5 40 72.5
AUR62025597 Chenopodium quinoa HOM05D002360 ORTHO05D006971 4.6e-07 58.5 40 72.5
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 4.6e-07 58.5 40 70.0
Solyc03g123760.3 Solanum lycopersicum HOM05D002360 ORTHO05D006971 4.6e-07 58.5 40 72.5
PGSC0003DMG400009156 Solanum tuberosum HOM05D002360 ORTHO05D006971 4.6e-07 58.5 40 72.5
Cpa.g.sc157.3 Carica papaya HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 70.0
FvH4_4g12690 Fragaria vesca HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 70.0
FAN07G1347 Fragaria x ananassa HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 70.0
FAN12G1508 Fragaria x ananassa HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 70.0
FAN17G2355 Fragaria x ananassa HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 70.0
FAN22G0477 Fragaria x ananassa HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 70.0
Glyma.18G003900 Glycine max HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 70.0
Lj6g0010237 Lotus japonicus HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 72.5
MBI19_g32880_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 70.0
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 6.0e-07 58.2 40 70.0
Lalb_Chr11g0075841 Lupinus albus HOM05D002360 ORTHO05D006971 7.8e-07 57.8 40 72.5
TWI38G1596 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 7.8e-07 57.8 40 70.0
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 1.0e-06 57.4 40 67.5
Glyma.11G253000 Glycine max HOM05D002360 ORTHO05D006971 1.0e-06 57.4 40 70.0
Manes.05G193700 Manihot esculenta HOM05D002360 ORTHO05D006971 1.0e-06 57.4 40 67.5
Medtr3g084850 Medicago truncatula HOM05D002360 ORTHO05D006971 1.0e-06 57.4 40 70.0
QL06p028316 Quercus lobata HOM05D002360 ORTHO05D006971 1.0e-06 57.4 40 67.5
Sopen03g041530 Solanum pennellii HOM05D002360 ORTHO05D006971 1.0e-06 57.4 40 70.0
TWI63G1808 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 1.0e-06 57.4 40 70.0
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 1.0e-06 57.4 40 70.0
Zm00001eb006300 Zea mays HOM05D002360 ORTHO05D006971 1.0e-06 57.4 40 70.0
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 1.3e-06 57.0 40 70.0
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 1.3e-06 57.0 40 70.0
Potri.014G148700 Populus trichocarpa HOM05D002360 ORTHO05D006971 1.3e-06 57.0 40 70.0
Sabra02G0179300 Salix brachista HOM05D002360 ORTHO05D006971 1.3e-06 57.0 40 70.0
AL7G42150 Arabidopsis lyrata HOM05D002360 ORTHO05D006971 1.7e-06 56.6 40 67.5
AT4G14210 Arabidopsis thaliana HOM05D002360 ORTHO05D006971 1.7e-06 56.6 40 67.5
BcaNung05576 Brassica carinata HOM05D002360 ORTHO05D006971 1.7e-06 56.6 40 67.5
Carub.0007s2818 Capsella rubella HOM05D002360 ORTHO05D006971 1.7e-06 56.6 40 67.5
Lj9A539T91 Lonicera japonica HOM05D002360 ORTHO05D006971 1.7e-06 56.6 40 67.5
Pp3c21_12310 Physcomitrium patens HOM05D002360 ORTHO05D006971 1.7e-06 56.6 40 65.0
TAR375G0345 Trochodendron aralioides HOM05D002360 ORTHO05D006971 1.7e-06 56.6 43 67.4
Thhalv10024795m.g Eutrema salsugineum HOM05D002360 ORTHO05D006971 2.3e-06 56.2 40 67.5
SMO141G0153 Selaginella moellendorffii HOM05D002360 ORTHO05D006971 2.3e-06 56.2 40 65.0
Zm00001eb138980 Zea mays HOM05D001168 ORTHO05D005551 2.3e-06 56.2 40 67.5
ATR0006G040 Amborella trichopoda HOM05D002360 ORTHO05D006971 3.0e-06 55.8 40 67.5
MELO3C017772.2 Cucumis melo HOM05D002360 ORTHO05D006971 3.0e-06 55.8 40 67.5
CsaV3_4G002690 Cucumis sativus L. HOM05D002360 ORTHO05D006971 3.0e-06 55.8 40 67.5
Mapoly0108s0060 Marchantia polymorpha HOM05D002360 ORTHO05D006971 3.0e-06 55.8 40 67.5
BcaB02g08628 Brassica carinata HOM05D002360 ORTHO05D006971 3.9e-06 55.5 40 65.0
BcaC02g09347 Brassica carinata HOM05D002360 ORTHO05D006971 3.9e-06 55.5 40 65.0
A04p07910 Brassica napus HOM05D002360 ORTHO05D006971 3.9e-06 55.5 40 65.0
A08p24280 Brassica napus HOM05D002360 ORTHO05D006971 3.9e-06 55.5 40 65.0
C04p41610 Brassica napus HOM05D002360 ORTHO05D006971 3.9e-06 55.5 40 65.0
BolC4t25740H Brassica oleracea HOM05D002360 ORTHO05D006971 3.9e-06 55.5 40 65.0
BraA04t16480Z Brassica rapa HOM05D002360 ORTHO05D006971 3.9e-06 55.5 40 65.0
BraA08t34383Z Brassica rapa HOM05D002360 ORTHO05D006971 3.9e-06 55.5 40 65.0
Aa31LG9G3180 Aethionema arabicum HOM05D002360 ORTHO05D006971 6.6e-06 54.7 40 65.0
CARHR220290 Cardamine hirsuta HOM05D002360 ORTHO05D006971 6.6e-06 54.7 40 65.0
SGA_v2.0_scaffold95G28695 Striga asiatica HOM05D000359 ORTHO05D000251 6.6e-06 54.7 34 88.2
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 8.6e-06 54.3 40 65.0
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 8.6e-06 54.3 40 65.0
BcaC01g00209 Brassica carinata HOM05D002360 ORTHO05D006971 8.6e-06 54.3 40 62.5
C03p76930 Brassica napus HOM05D002360 ORTHO05D006971 8.6e-06 54.3 40 62.5
BolC3t19948H Brassica oleracea HOM05D002360 ORTHO05D006971 8.6e-06 54.3 40 62.5
ECA232G4402 Erigeron canadensis HOM05D002360 ORTHO05D006971 8.6e-06 54.3 40 62.5
HanXRQChr15g0497361 Helianthus annuus HOM05D002360 ORTHO05D006971 8.6e-06 54.3 40 65.0
Sp7g12070 Schrenkiella parvula HOM05D002360 ORTHO05D006971 8.6e-06 54.3 40 62.5


User provided reference genes

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