Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 2.9e-182 641.7 320 100.0
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 2.4e-120 436.0 274 77.0
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 7.6e-114 414.5 275 71.3
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 2.2e-113 412.9 275 73.1
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 6.7e-110 401.4 275 71.6
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 8.7e-110 401.0 316 64.9
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 2.5e-109 399.4 358 58.7
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 4.3e-109 398.7 276 72.1
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 1.3e-108 397.1 275 70.5
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 1.6e-108 396.7 275 72.0
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 2.8e-108 396.0 275 69.1
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 2.8e-108 396.0 281 68.7
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 3.1e-107 392.5 275 68.7
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 9.0e-107 391.0 275 68.4
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 2.0e-106 389.8 275 69.5
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 4.5e-106 388.7 272 66.9
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 1.7e-105 386.7 262 70.6
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 6.5e-105 384.8 275 67.6
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 6.5e-105 384.8 275 68.7
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 1.4e-104 383.6 275 68.4
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.4e-104 383.6 275 66.5
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 1.4e-104 383.6 276 68.5
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 4.2e-104 382.1 274 67.9
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 4.2e-104 382.1 274 67.9
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 5.5e-104 381.7 271 67.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 5.5e-104 381.7 276 67.4
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 7.1e-104 381.3 275 65.5
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 9.3e-104 380.9 276 67.4
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.3e-104 380.9 276 67.4
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 1.2e-103 380.6 278 67.6
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 1.6e-103 380.2 277 67.5
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.1e-103 379.8 275 66.2
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.7e-103 379.4 276 67.8
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 2.7e-103 379.4 276 67.4
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 2.7e-103 379.4 273 67.4
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 3.5e-103 379.0 275 66.5
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 4.6e-103 378.6 276 67.4
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 4.6e-103 378.6 314 60.5
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.0e-103 378.3 275 65.8
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 6.0e-103 378.3 278 67.3
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 6.0e-103 378.3 276 66.7
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 7.9e-103 377.9 276 67.8
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 7.9e-103 377.9 276 67.0
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 1.8e-102 376.7 260 70.8
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 2.3e-102 376.3 275 67.6
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 3.0e-102 375.9 278 68.0
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 3.9e-102 375.6 276 66.3
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 5.1e-102 375.2 272 67.6
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 8.7e-102 374.4 275 65.1
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.1e-101 374.0 276 66.7
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.5e-101 373.6 276 66.3
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 2.5e-101 372.9 273 67.4
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 3.3e-101 372.5 276 65.9
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 5.7e-101 371.7 273 67.0
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 5.7e-101 371.7 275 65.5
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 7.4e-101 371.3 274 65.7
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 7.4e-101 371.3 327 57.8
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 1.6e-100 370.2 276 67.0
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 4.8e-100 368.6 273 65.9
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 6.3e-100 368.2 275 64.7
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 6.3e-100 368.2 290 62.4
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 1.4e-99 367.1 274 63.9
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 2.4e-99 366.3 273 66.3
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.1e-99 365.9 275 63.6
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 5.3e-99 365.2 274 66.1
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 5.3e-99 365.2 274 65.7
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 1.2e-98 364.0 273 65.2
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 1.2e-98 364.0 285 65.3
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 1.5e-98 363.6 273 65.2
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 2.0e-98 363.2 276 63.0
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 3.4e-98 362.5 276 65.6
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 4.5e-98 362.1 276 64.1
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 7.6e-98 361.3 298 63.4
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 1.0e-97 360.9 276 64.1
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 1.3e-97 360.5 273 65.2
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.3e-97 360.5 273 62.6
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 1.7e-97 360.1 275 65.5
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 2.2e-97 359.8 276 62.3
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 2.9e-97 359.4 275 65.5
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 3.8e-97 359.0 275 61.8
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 8.5e-97 357.8 256 68.4
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 8.5e-97 357.8 276 63.8
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 1.1e-96 357.5 275 64.7
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 1.4e-96 357.1 276 64.5
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.9e-96 356.7 275 64.7
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 2.1e-95 353.2 275 61.1
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 2.7e-95 352.8 270 63.0
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 1.1e-93 347.4 276 63.4
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 1.3e-92 344.0 209 75.6
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 2.8e-92 342.8 207 76.8
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 8.5e-89 331.3 275 61.1
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 1.8e-86 323.6 279 57.7
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 6.5e-81 305.1 237 63.3
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.3e-78 296.6 236 61.0
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.2e-78 295.4 274 54.4
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.1e-77 294.3 284 51.8
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 1.1e-77 294.3 311 48.2
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 4.4e-77 292.4 247 59.9
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 9.7e-77 291.2 237 59.5
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.3e-76 290.8 332 47.9
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.7e-76 290.4 275 54.5
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 7.2e-72 275.0 294 46.6
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 9.4e-64 248.1 348 39.1
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 1.2e-61 241.1 281 47.3
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.1e-59 234.6 291 44.0
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 1.6e-55 220.7 340 41.2
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 2.0e-53 213.8 282 42.9
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 6.3e-52 208.8 287 40.8
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 2.7e-50 203.4 273 41.4
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.6e-45 186.8 157 60.5
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 9.8e-45 184.9 99 79.8
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.4e-43 181.0 168 54.8
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.4e-37 159.5 83 80.7
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 9.8e-37 158.3 119 63.0
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.7e-28 131.0 128 51.6
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 2.8e-23 113.6 59 81.4
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.0e-18 95.9 115 46.1
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.0e-18 95.9 115 46.1
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 9.6e-16 88.6 94 47.9
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.2e-15 85.9 107 44.9
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 2.4e-14 84.0 69 62.3
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 2.0e-13 80.9 51 68.6
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 9.9e-13 78.6 51 66.7
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 9.9e-13 78.6 51 66.7
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 6.0e-10 69.3 122 37.7
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 6.6e-09 65.9 43 62.8
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 1.5e-08 64.7 37 75.7
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 4.3e-08 63.2 73 41.1
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.6e-07 61.2 76 43.4
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.1e-06 58.5 77 39.0
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 1.4e-06 58.2 38 60.5
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 4.0e-06 56.6 77 40.3
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 6.9e-06 55.8 70 40.0
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 6.9e-06 55.8 73 42.5


User provided reference genes

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