Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 4.7e-58 227.6 114 100.0
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 2.6e-56 221.9 114 97.4
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.0e-20 103.6 66 83.3
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 9.6e-19 97.1 79 64.6
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 1.3e-18 96.7 87 58.6
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 1.3e-18 96.7 60 78.3
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.6e-18 96.3 58 79.3
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 2.8e-18 95.5 58 79.3
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.8e-18 95.5 81 64.2
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.8e-18 95.5 79 62.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 3.6e-18 95.1 58 79.3
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.8e-18 94.7 83 62.7
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.8e-18 94.7 83 62.7
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 4.8e-18 94.7 63 74.6
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 4.8e-18 94.7 63 74.6
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 4.8e-18 94.7 58 79.3
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 4.8e-18 94.7 52 86.5
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.8e-18 94.7 52 86.5
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 6.2e-18 94.4 59 74.6
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 6.2e-18 94.4 58 81.0
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 6.2e-18 94.4 58 77.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 6.2e-18 94.4 58 79.3
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 6.2e-18 94.4 53 84.9
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 8.1e-18 94.0 58 79.3
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 8.1e-18 94.0 58 77.6
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 8.1e-18 94.0 58 79.3
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 8.1e-18 94.0 52 86.5
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 8.1e-18 94.0 58 79.3
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 8.1e-18 94.0 52 86.5
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 8.1e-18 94.0 58 77.6
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 8.1e-18 94.0 58 77.6
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.1e-17 93.6 58 79.3
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.1e-17 93.6 58 79.3
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 1.1e-17 93.6 56 80.4
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.1e-17 93.6 58 79.3
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.4e-17 93.2 58 77.6
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.4e-17 93.2 79 60.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.4e-17 93.2 59 74.6
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.4e-17 93.2 59 76.3
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 1.4e-17 93.2 67 71.6
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 1.4e-17 93.2 64 75.0
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.4e-17 93.2 74 68.9
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.4e-17 93.2 74 68.9
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.8e-17 92.8 58 75.9
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.8e-17 92.8 58 79.3
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.8e-17 92.8 58 79.3
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.8e-17 92.8 85 61.2
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.8e-17 92.8 58 77.6
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.8e-17 92.8 53 81.1
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.8e-17 92.8 58 75.9
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.8e-17 92.8 58 75.9
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.8e-17 92.8 59 74.6
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.8e-17 92.8 66 74.2
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 1.8e-17 92.8 74 67.6
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.8e-17 92.8 82 59.8
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 2.4e-17 92.4 67 70.1
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 2.4e-17 92.4 53 83.0
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.4e-17 92.4 66 71.2
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 2.4e-17 92.4 53 84.9
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.4e-17 92.4 69 68.1
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 2.4e-17 92.4 59 72.9
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 2.4e-17 92.4 66 72.7
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 2.4e-17 92.4 95 53.7
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 3.1e-17 92.0 58 77.6
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 3.1e-17 92.0 69 68.1
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 4.0e-17 91.7 80 61.2
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 4.0e-17 91.7 63 73.0
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 4.0e-17 91.7 63 73.0
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 4.0e-17 91.7 63 73.0
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 4.0e-17 91.7 63 73.0
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 4.0e-17 91.7 63 73.0
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 4.0e-17 91.7 58 79.3
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 4.0e-17 91.7 53 81.1
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.0e-17 91.7 53 79.2
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 4.0e-17 91.7 85 55.3
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 4.0e-17 91.7 77 59.7
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 5.3e-17 91.3 63 74.6
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 5.3e-17 91.3 52 84.6
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 5.3e-17 91.3 58 74.1
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 5.3e-17 91.3 58 74.1
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 5.3e-17 91.3 85 60.0
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 5.3e-17 91.3 85 60.0
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 5.3e-17 91.3 53 79.2
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 5.3e-17 91.3 77 62.3
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.3e-17 91.3 58 72.4
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 6.9e-17 90.9 63 74.6
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 6.9e-17 90.9 58 74.1
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 6.9e-17 90.9 53 79.2
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 6.9e-17 90.9 67 70.1
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 6.9e-17 90.9 53 81.1
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 9.0e-17 90.5 59 71.2
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 9.0e-17 90.5 58 77.6
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 9.0e-17 90.5 58 77.6
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 9.0e-17 90.5 95 57.9
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 9.0e-17 90.5 63 68.3
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 9.0e-17 90.5 53 83.0
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 9.0e-17 90.5 54 77.8
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.2e-16 90.1 58 74.1
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.2e-16 90.1 53 81.1
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.2e-16 90.1 59 74.6
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-16 90.1 59 74.6
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-16 90.1 59 74.6
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-16 90.1 59 74.6
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-16 90.1 59 74.6
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.2e-16 90.1 53 79.2
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-16 89.7 52 82.7
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 1.5e-16 89.7 52 82.7
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.5e-16 89.7 53 77.4
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.5e-16 89.7 58 74.1
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.5e-16 89.7 70 62.9
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 2.0e-16 89.4 53 79.2
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.0e-16 89.4 85 58.8
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.6e-16 89.0 53 77.4
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.6e-16 89.0 80 61.2
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.6e-16 89.0 53 75.5
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 4.5e-16 88.2 85 57.6
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 4.5e-16 88.2 52 82.7
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 4.5e-16 88.2 59 71.2
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 4.5e-16 88.2 53 75.5
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 5.8e-16 87.8 85 58.8
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 5.8e-16 87.8 53 81.1
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 5.8e-16 87.8 52 78.8
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 5.8e-16 87.8 53 77.4
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.3e-15 86.7 52 76.9
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.3e-15 86.7 57 73.7
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.3e-15 86.7 57 73.7
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.3e-15 86.7 53 73.6
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.2e-15 85.9 58 70.7
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.2e-15 85.9 56 73.2
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 2.2e-15 85.9 54 75.9
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.9e-15 85.5 53 75.5
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.9e-15 85.5 53 73.6
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 6.4e-15 84.3 57 68.4
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 8.4e-15 84.0 52 76.9
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 8.4e-15 84.0 52 76.9
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 8.4e-15 84.0 52 76.9
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-14 83.6 52 75.0
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-14 83.6 52 75.0
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.1e-14 83.6 52 75.0
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 1.1e-14 83.6 52 75.0
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.4e-14 83.2 53 71.7
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.4e-14 83.2 52 76.9
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.9e-14 82.8 52 75.0
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.4e-14 82.4 52 73.1
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 3.2e-14 82.0 57 68.4
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 4.2e-14 81.6 57 70.2
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 4.2e-14 81.6 53 75.5
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 4.2e-14 81.6 52 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 9.3e-14 80.5 53 71.7
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.2e-13 80.1 58 63.8
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.6e-13 79.7 52 71.2
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.3e-12 76.6 62 56.5
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 5.1e-12 74.7 120 42.5
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-11 73.2 52 59.6
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 9.6e-11 70.5 61 59.0
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 9.6e-11 70.5 61 55.7
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 9.6e-11 70.5 61 57.4
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 9.6e-11 70.5 52 61.5
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.3e-10 70.1 53 64.2
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 1.3e-10 70.1 50 62.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 4.8e-10 68.2 66 50.0
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 4.8e-10 68.2 53 54.7
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 8.1e-10 67.4 101 41.6
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.1e-09 67.0 52 51.9
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.8e-09 66.2 67 44.8
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 6.9e-09 64.3 50 60.0
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 2.6e-08 62.4 43 69.8
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 2.2e-07 59.3 37 75.7
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 3.8e-07 58.5 37 73.0
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 6.4e-07 57.8 37 73.0
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.4e-06 56.6 55 56.4
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 4.2e-06 55.1 39 69.2
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 4.2e-06 55.1 37 70.3


User provided reference genes

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