Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1673.3 837 100.0
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1278.5 959 71.0
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1251.1 959 69.6
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1204.5 958 66.6
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1189.5 963 65.2
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1176.8 960 64.7
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1140.9 959 62.4
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1134.4 959 62.5
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1134.0 959 62.0
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1130.2 960 62.5
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1127.5 962 62.3
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1124.4 960 62.0
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1122.8 959 61.5
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1119.8 960 61.8
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1116.3 959 61.5
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1114.4 959 61.3
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1114.0 1008 59.5
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1112.8 958 61.5
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1112.1 963 61.5
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1110.1 960 60.9
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1109.4 958 61.0
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1109.0 957 61.8
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1107.8 960 61.0
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1106.3 961 61.1
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1106.3 962 60.7
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1105.1 958 61.2
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1104.7 959 61.3
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1104.4 963 61.0
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1104.4 958 60.2
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1103.2 959 61.1
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1103.2 959 60.9
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1097.0 958 62.0
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1096.6 1049 56.7
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1095.5 977 60.0
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1095.5 963 61.3
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1093.2 977 59.9
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1092.4 944 61.8
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1090.9 937 60.5
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1087.4 1025 57.1
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1085.5 958 59.8
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1084.7 958 60.9
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1082.0 960 60.1
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1082.0 958 59.5
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1078.9 958 59.8
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1078.2 952 59.8
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1076.6 959 60.0
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1075.8 958 59.7
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1075.1 961 59.5
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 5.7e-312 1074.3 960 59.6
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 5.7e-312 1073.9 960 59.8
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 1.1e-311 1073.2 967 59.4
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 2.9e-311 1071.6 964 60.1
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 4.0e-311 1071.2 959 58.7
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 4.0e-311 1071.2 957 59.8
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 5.2e-311 1070.8 959 59.3
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 8.6e-311 1070.1 967 59.2
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 5.7e-310 1067.4 959 59.5
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 9.6e-310 1066.6 1045 55.5
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 8.2e-309 1063.5 959 58.1
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 8.2e-309 1063.5 960 59.6
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 3.1e-308 1061.6 958 58.5
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 3.1e-308 1061.6 960 58.5
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 1.5e-307 1059.3 963 58.9
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 2.6e-307 1058.5 967 58.4
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 3.4e-307 1058.1 963 58.6
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 4.5e-307 1057.7 961 57.8
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 1.7e-306 1055.8 963 58.3
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 4.2e-305 1051.2 960 57.8
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 5.5e-305 1050.8 921 60.7
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 7.2e-305 1050.4 957 58.2
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 1.6e-304 1049.3 958 57.7
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 2.7e-304 1048.5 963 57.6
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 3.0e-303 1045.0 959 58.3
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.1e-302 1043.1 960 57.8
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 1.5e-302 1042.7 958 57.0
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 1.9e-302 1042.3 958 56.9
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 2.2e-301 1038.9 792 68.1
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 3.2e-297 1025.0 950 56.7
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.6e-296 1022.7 968 56.5
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 2.7e-296 1021.9 1003 56.0
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 2.7e-296 1021.9 960 56.1
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 1.5e-294 1016.1 797 66.1
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 2.0e-294 1015.8 963 56.4
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 6.9e-292 1007.3 800 65.6
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 2.0e-291 1005.7 957 56.7
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 3.6e-288 995.0 965 55.1
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.8e-287 992.6 931 58.1
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 2.6e-286 988.8 962 55.0
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 1.5e-281 973.0 957 55.5
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 1.1e-276 956.8 788 63.2
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 2.7e-275 952.2 791 62.8
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.7e-274 949.5 883 58.7
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 3.0e-271 938.7 854 60.4
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.7e-221 773.5 632 64.2
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 1.1e-217 760.8 976 44.8
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 2.1e-216 756.5 956 44.6
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 9.0e-207 724.5 971 42.7
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 4.8e-200 702.2 655 56.9
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 4.9e-197 692.2 519 67.6
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 3.2e-196 689.5 639 58.8
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.8e-186 657.1 518 63.3
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 3.8e-181 639.4 733 50.9
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 3.2e-180 636.3 669 52.3
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 2.6e-166 590.1 450 65.3
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 1.1e-164 584.7 453 64.5
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.5e-164 584.3 450 64.4
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 2.7e-163 580.1 451 63.4
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 4.0e-162 576.2 465 63.0
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 7.0e-159 565.5 475 59.8
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 7.7e-158 562.0 450 64.7
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 8.8e-154 548.5 450 60.7
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 2.6e-153 547.0 461 59.4
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 2.4e-151 540.4 446 60.5
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 2.9e-149 533.5 450 61.3
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.9e-148 530.8 452 58.8
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.8e-144 516.9 605 48.9
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 2.7e-142 510.4 410 63.7
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 6.6e-133 479.2 409 58.4
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 3.1e-130 470.3 429 57.3
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 6.4e-112 409.5 366 59.0
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 6.0e-110 402.9 450 51.3
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 1.5e-108 398.3 366 58.5
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 4.4e-105 386.7 240 80.0
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 2.2e-104 384.4 267 70.0
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 2.7e-94 350.9 334 56.0
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.8e-91 340.9 326 55.8
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 9.0e-90 335.9 237 72.2
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.5e-89 335.1 439 44.6
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.9e-88 330.1 246 66.7
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.6e-86 325.1 213 74.6
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 1.6e-86 325.1 303 56.8
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.3e-85 322.0 266 63.9
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.5e-76 292.0 772 28.5
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.8e-69 268.5 271 55.0
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 7.9e-62 243.0 132 84.1
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 1.7e-51 208.8 220 51.8
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 2.9e-48 198.0 187 51.9
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.0e-44 185.3 156 59.6
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 5.7e-44 183.7 167 61.1
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 4.8e-43 180.6 155 60.0
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 2.9e-40 171.4 178 53.4
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.5e-31 142.5 118 58.5
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 5.9e-25 120.6 115 53.0
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 2.3e-24 118.6 111 54.1
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.6e-22 112.5 85 65.9
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 1.6e-22 112.5 55 92.7
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 2.2e-19 102.1 77 64.9
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 9.2e-18 96.7 68 69.1
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.3e-16 92.8 127 40.9
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 2.1e-14 85.5 68 63.2
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 3.6e-14 84.7 59 69.5
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.9e-11 75.1 40 82.5
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 2.1e-09 68.9 74 51.4
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 3.5e-09 68.2 52 63.5
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 3.5e-09 68.2 41 75.6
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 4.6e-09 67.8 48 70.8
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.7e-08 65.9 43 67.4


User provided reference genes

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