Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 4.7e-310 1067.0 529 100.0
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 6.4e-275 950.3 539 88.1
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 4.3e-271 937.6 539 86.3
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 5.6e-271 937.2 539 86.6
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.6e-270 935.6 538 86.1
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.1e-269 932.9 539 85.3
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 6.8e-269 930.2 539 85.0
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.2e-268 929.5 539 85.3
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.2e-268 929.5 539 85.2
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.2e-268 929.5 539 85.2
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.2e-268 929.5 539 85.2
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.9e-267 924.9 539 84.6
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 3.7e-267 924.5 538 84.2
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 4.9e-267 924.1 539 84.6
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 5.4e-266 920.6 539 83.5
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.1e-265 918.7 539 83.7
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.1e-265 918.7 539 83.7
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 3.5e-265 917.9 547 83.0
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 3.5e-265 917.9 534 85.0
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 6.0e-265 917.1 539 83.9
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.0e-264 914.8 539 84.0
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.9e-263 912.1 539 84.2
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 2.1e-262 908.7 563 81.2
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 2.1e-262 908.7 538 83.1
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 4.7e-262 907.5 558 82.6
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 6.2e-262 907.1 539 82.0
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.8e-261 905.6 539 83.5
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 8.9e-261 903.3 539 81.3
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 2.6e-260 901.7 539 82.0
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 3.4e-260 901.4 539 82.6
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 9.9e-260 899.8 539 81.8
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.3e-259 899.4 539 82.2
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.9e-259 897.5 539 80.9
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 8.4e-259 896.7 539 81.4
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.1e-258 896.3 539 81.6
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 2.1e-257 892.1 572 78.0
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.1e-257 892.1 539 81.4
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 2.7e-257 891.7 539 81.1
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 2.7e-257 891.7 539 81.4
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.7e-257 891.7 539 81.3
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.5e-257 891.3 537 81.2
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 3.5e-257 891.3 539 81.1
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 3.5e-257 891.3 539 80.9
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 7.8e-257 890.2 539 80.9
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 7.8e-257 890.2 539 82.2
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.0e-256 889.8 539 81.3
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.0e-256 889.8 539 80.9
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.3e-256 889.4 539 81.6
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 1.7e-256 889.0 539 81.8
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.7e-256 889.0 539 81.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.9e-256 887.9 522 84.1
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.9e-255 885.6 539 80.9
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.3e-255 884.8 539 80.7
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.3e-255 884.4 572 77.6
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.3e-255 884.4 539 80.3
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.6e-255 884.0 539 80.7
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 7.3e-255 883.6 539 79.8
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 7.3e-255 883.6 539 80.5
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 7.3e-255 883.6 539 79.6
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 9.6e-255 883.2 522 83.0
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 9.6e-255 883.2 539 80.9
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 1.6e-254 882.5 539 79.8
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 2.8e-254 881.7 574 77.4
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 3.6e-254 881.3 539 80.7
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 3.6e-254 881.3 538 80.1
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 4.7e-254 880.9 539 80.0
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.4e-253 879.4 539 80.3
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.4e-253 878.6 550 80.0
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 3.1e-253 878.2 539 79.8
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 5.2e-253 877.5 539 80.0
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 8.9e-253 876.7 537 80.6
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.2e-252 876.3 539 79.6
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.2e-252 876.3 539 80.3
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 2.0e-252 875.5 537 80.6
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 2.0e-252 875.5 539 79.6
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.0e-252 875.5 539 79.6
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.6e-252 875.2 539 79.8
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.6e-252 875.2 539 79.4
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 2.6e-252 875.2 529 82.6
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.6e-252 875.2 539 80.1
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 2.6e-252 875.2 537 80.4
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 4.4e-252 874.4 539 79.6
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 4.4e-252 874.4 537 80.6
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 5.8e-252 874.0 537 80.6
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 5.8e-252 874.0 537 80.3
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 5.8e-252 874.0 537 80.3
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 5.8e-252 874.0 537 80.3
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 5.8e-252 874.0 539 79.6
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 7.6e-252 873.6 537 80.4
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 7.6e-252 873.6 539 79.2
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 7.6e-252 873.6 539 79.2
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.3e-251 872.8 537 80.3
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.3e-251 872.8 537 80.3
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.3e-251 872.8 539 79.6
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.7e-251 872.5 539 79.2
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.2e-251 872.1 537 80.1
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.2e-251 872.1 537 80.1
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.2e-251 872.1 539 78.8
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 2.9e-251 871.7 537 80.4
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 3.8e-251 871.3 539 79.6
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 4.9e-251 870.9 539 79.4
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.9e-250 869.0 539 79.4
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.9e-250 869.0 537 79.9
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 3.2e-250 868.2 537 79.7
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 5.4e-250 867.5 522 81.8
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.4e-250 867.5 555 76.4
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 7.1e-250 867.1 551 78.0
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.6e-249 865.9 539 78.3
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.0e-248 863.2 616 72.1
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 5.1e-248 860.9 606 72.3
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.2e-241 839.7 544 76.3
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 5.1e-240 834.3 522 76.8
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 8.7e-240 833.6 539 75.0
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.3e-239 831.6 539 76.8
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 6.2e-238 827.4 539 75.5
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.4e-237 825.5 539 75.1
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.2e-235 818.9 557 76.3
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 4.6e-233 811.2 539 72.4
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 9.6e-231 803.5 487 81.3
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 5.8e-228 794.3 541 71.9
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 3.9e-224 781.6 539 74.6
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 3.3e-223 778.5 492 80.7
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 5.0e-211 738.0 539 68.1
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 6.5e-211 737.6 543 70.0
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 1.2e-209 733.4 541 66.0
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 1.8e-208 729.6 539 65.9
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.5e-202 709.1 445 79.6
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 4.4e-199 698.4 472 74.8
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.3e-198 694.5 438 78.5
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.6e-196 689.1 502 72.3
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 7.2e-194 681.0 445 75.7
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 4.7e-193 678.3 501 65.7
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 1.4e-192 676.8 431 76.8
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.8e-189 666.4 385 84.4
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.7e-188 662.5 434 76.7
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.0e-184 650.6 545 60.0
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 5.9e-180 634.8 415 77.6
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.7e-171 606.7 435 72.0
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.7e-158 562.4 551 52.3
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 8.3e-158 561.2 312 87.8
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.7e-134 483.8 374 68.2
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.8e-118 429.5 341 66.9
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 9.0e-104 381.7 197 89.3
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 4.4e-90 336.3 279 61.6
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 6.7e-75 285.8 228 63.2
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 3.0e-67 260.4 554 32.3
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 2.9e-62 243.8 118 96.6
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 6.1e-60 236.1 118 93.2
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 1.5e-58 231.5 146 76.0
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.4e-58 230.3 143 76.9
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 4.9e-57 226.5 143 75.5
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.0e-55 221.1 178 67.4
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 4.0e-51 206.8 116 88.8
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 9.2e-48 195.7 127 74.8
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.6e-47 194.9 126 73.0
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.3e-43 181.0 127 68.5
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 2.3e-43 181.0 106 88.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 4.9e-41 173.3 95 84.2
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.3e-41 172.6 94 84.0
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.6e-37 159.8 91 78.0
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 6.8e-35 152.9 156 57.1
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 5.6e-29 133.3 89 74.2
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 5.2e-27 126.7 118 61.0
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 7.6e-26 122.9 60 91.7
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 2.4e-24 117.9 73 80.8
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 3.2e-24 117.5 70 72.9
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.6e-18 97.8 57 80.7
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.1e-16 92.4 214 30.8
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 3.5e-15 87.4 67 59.7
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 8.7e-14 82.8 164 30.5
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 1.5e-10 72.0 34 97.1


User provided reference genes

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