Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 5.0e-285 983.8 513 100.0
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 3.5e-92 343.2 377 53.8
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.1e-89 334.0 497 45.7
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 4.0e-80 303.1 528 43.4
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 1.5e-79 301.2 508 42.1
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 2.0e-79 300.8 481 42.6
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.4e-79 300.1 512 43.0
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 5.7e-79 299.3 540 41.1
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 9.8e-79 298.5 473 43.3
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 2.8e-78 297.0 540 40.9
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.1e-77 295.0 487 44.1
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 1.8e-77 294.3 480 42.5
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 9.1e-77 292.0 480 44.0
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.2e-76 291.6 480 43.1
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.0e-76 290.8 478 42.9
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.7e-76 290.4 530 41.5
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 5.9e-76 289.3 533 40.5
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 7.7e-76 288.9 490 42.0
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.3e-75 288.1 468 42.5
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.9e-75 287.0 482 43.6
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 2.9e-75 287.0 479 42.4
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 3.8e-75 286.6 528 41.3
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 3.8e-75 286.6 398 47.5
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 8.5e-75 285.4 539 39.5
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.1e-74 285.0 495 43.2
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 1.1e-74 285.0 407 49.1
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.5e-74 284.6 415 46.0
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.5e-74 283.9 466 43.1
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 3.2e-74 283.5 378 50.3
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 3.2e-74 283.5 484 41.9
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 3.2e-74 283.5 423 45.2
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 9.5e-74 282.0 480 42.3
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.2e-73 281.6 532 41.2
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 1.6e-73 281.2 481 43.5
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.1e-73 280.8 416 44.2
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 3.6e-73 280.0 500 42.0
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 3.6e-73 280.0 402 46.3
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 3.6e-73 280.0 482 41.9
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 3.6e-73 280.0 382 47.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 4.7e-73 279.6 412 46.8
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 4.7e-73 279.6 482 43.4
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 8.0e-73 278.9 441 43.1
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 8.0e-73 278.9 382 49.2
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.0e-72 278.5 489 41.7
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.4e-72 278.1 478 40.4
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 1.4e-72 278.1 397 46.1
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 4.0e-72 276.6 487 40.0
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 5.2e-72 276.2 513 40.2
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 5.2e-72 276.2 347 50.4
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 6.8e-72 275.8 484 42.6
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 6.8e-72 275.8 477 40.9
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 8.8e-72 275.4 405 44.9
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.2e-71 275.0 503 40.4
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 2.6e-71 273.9 380 46.8
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 5.7e-71 272.7 475 40.4
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 7.5e-71 272.3 366 46.7
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 7.5e-71 272.3 464 40.5
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 7.5e-71 272.3 396 48.0
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 9.8e-71 271.9 509 40.1
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 9.8e-71 271.9 398 45.2
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 9.8e-71 271.9 524 39.3
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.3e-70 271.6 466 42.9
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.7e-70 271.2 483 41.0
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 2.2e-70 270.8 546 39.6
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 2.8e-70 270.4 370 48.1
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.7e-70 270.0 527 40.0
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 3.7e-70 270.0 397 45.6
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 8.3e-70 268.9 476 41.4
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.1e-69 268.5 394 45.7
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.1e-69 268.5 309 52.1
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 1.4e-69 268.1 370 47.8
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.4e-69 267.3 527 39.8
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 9.2e-69 265.4 470 42.1
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.2e-68 265.0 369 47.2
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 2.0e-68 264.2 498 40.0
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.0e-67 261.9 489 41.1
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.0e-67 261.9 404 46.0
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 1.0e-67 261.9 403 45.2
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.7e-67 261.2 475 41.1
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 2.3e-67 260.8 489 40.7
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 3.8e-67 260.0 351 47.6
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 3.8e-67 260.0 469 39.9
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 6.6e-67 259.2 471 42.9
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.5e-66 257.3 371 46.4
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 7.3e-66 255.8 475 39.2
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 1.2e-65 255.0 382 45.3
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 1.8e-64 251.1 521 37.6
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 2.3e-64 250.8 487 40.0
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 2.9e-62 243.8 353 44.2
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.8e-61 241.1 362 43.9
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.2e-61 240.4 459 38.6
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 3.5e-60 236.9 392 42.1
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 1.7e-59 234.6 388 42.3
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 2.3e-59 234.2 372 42.2
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 3.9e-59 233.4 342 45.0
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 5.0e-59 233.0 450 40.9
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 6.6e-59 232.6 374 43.3
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 5.6e-58 229.6 343 44.3
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 2.1e-57 227.6 339 44.5
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 3.1e-56 223.8 519 35.6
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 1.5e-55 221.5 323 45.2
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.5e-55 221.5 314 46.2
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 5.8e-55 219.5 314 45.5
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 2.2e-54 217.6 314 45.2
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 2.2e-54 217.6 314 45.2
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 3.7e-54 216.9 329 42.9
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 8.3e-54 215.7 423 37.6
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.4e-53 214.9 420 37.6
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.9e-53 214.5 272 48.5
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 7.0e-53 212.6 308 44.5
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 9.2e-53 212.2 314 44.3
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.2e-52 211.8 307 45.0
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 8.6e-51 205.7 355 40.6
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 8.6e-51 205.7 319 42.0
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 1.1e-50 205.3 406 38.7
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.5e-50 204.9 296 43.6
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 9.5e-50 202.2 236 49.2
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 5.2e-48 196.4 451 36.4
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 6.0e-44 183.0 310 44.2
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 5.6e-42 176.4 324 38.6
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 8.1e-41 172.6 336 37.2
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.1e-37 160.2 199 47.7
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-36 157.9 199 46.7
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.3e-35 155.2 199 46.7
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.3e-35 155.2 199 46.7
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.8e-32 144.8 176 46.6
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.8e-25 120.2 434 32.5
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 6.2e-25 119.8 104 58.7
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 2.4e-24 117.9 313 29.4
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 1.8e-19 101.7 264 36.0
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 4.3e-18 97.1 196 35.2
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 4.3e-18 97.1 203 33.0
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 3.6e-17 94.0 303 30.7
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 6.2e-17 93.2 135 47.4
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 3.5e-12 77.4 258 29.8
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 7.4e-10 69.7 60 58.3
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.6e-09 68.6 49 67.3
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 1.4e-08 65.5 51 58.8


User provided reference genes

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