Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 8.9e-284 979.5 480 100.0
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 2.0e-166 589.7 464 67.5
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 4.1e-156 555.4 476 62.2
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 5.4e-156 555.1 466 63.5
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 3.5e-155 552.4 469 62.3
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 1.0e-154 550.8 461 62.3
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 2.5e-153 546.2 458 62.0
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.6e-152 543.5 472 61.0
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 3.6e-152 542.3 457 61.7
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 1.1e-151 540.8 459 61.9
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 5.2e-151 538.5 611 50.6
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 7.6e-150 534.6 457 61.5
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 1.7e-149 533.5 459 60.6
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.4e-148 530.4 457 61.5
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 3.2e-148 529.3 457 61.1
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 3.2e-148 529.3 567 53.3
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 7.1e-148 528.1 457 60.4
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 7.1e-148 528.1 460 59.8
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 6.0e-147 525.0 457 60.8
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 2.3e-146 523.1 461 60.3
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 6.6e-146 521.5 457 60.4
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 6.6e-146 521.5 459 60.8
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 2.5e-145 519.6 484 58.3
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 5.6e-145 518.5 459 60.6
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 9.6e-145 517.7 459 60.1
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 1.6e-144 516.9 457 59.7
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 1.6e-144 516.9 459 61.7
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 2.1e-144 516.5 457 59.5
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 2.8e-144 516.2 459 59.3
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 6.2e-144 515.0 457 59.5
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 6.9e-143 511.5 462 59.5
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 9.0e-143 511.1 457 58.2
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 1.7e-141 506.9 426 63.1
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 1.1e-140 504.2 459 58.8
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 1.9e-140 503.4 429 61.5
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 7.1e-140 501.5 459 57.5
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 7.1e-140 501.5 456 58.3
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 1.2e-139 500.7 460 58.9
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.6e-139 500.4 458 57.6
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 6.0e-139 498.4 465 59.1
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 7.9e-139 498.0 468 57.5
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 1.7e-138 496.9 457 57.5
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 1.7e-138 496.9 459 59.5
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 1.1e-135 487.6 456 55.3
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.8e-135 486.9 458 57.0
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 2.4e-135 486.5 456 55.3
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 3.1e-135 486.1 486 56.4
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 5.3e-135 485.3 461 57.3
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 7.6e-134 481.5 467 56.7
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 3.8e-133 479.2 480 56.5
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 1.9e-132 476.9 454 54.2
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 1.2e-131 474.2 467 57.2
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 6.2e-128 461.8 459 53.2
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 3.1e-127 459.5 482 53.1
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 1.5e-126 457.2 461 53.8
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 2.6e-126 456.4 451 53.2
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 1.3e-125 454.1 428 55.4
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 1.7e-125 453.8 457 53.2
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 1.9e-124 450.3 451 55.0
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 1.9e-124 450.3 454 52.9
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 1.2e-123 447.6 462 52.2
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 2.7e-123 446.4 464 52.4
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 3.5e-123 446.0 505 51.1
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 4.6e-123 445.7 463 52.7
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 1.3e-122 444.1 462 53.0
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 3.0e-122 443.0 462 52.6
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 3.9e-122 442.6 449 54.1
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 5.1e-122 442.2 458 52.8
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 3.3e-121 439.5 462 52.2
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 6.2e-120 435.3 455 51.0
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 1.1e-119 434.5 452 51.8
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 1.4e-119 434.1 459 50.5
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 2.0e-118 430.3 443 54.6
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 2.9e-117 426.4 463 50.5
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 5.0e-117 425.6 462 51.7
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 8.4e-117 424.9 462 51.7
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 2.5e-116 423.3 462 50.6
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 5.5e-116 422.2 472 50.8
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 3.3e-113 412.9 463 50.1
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 5.7e-113 412.1 466 50.6
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 1.3e-112 411.0 466 50.0
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 6.9e-111 405.2 457 48.1
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 7.2e-108 395.2 467 49.7
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 1.4e-106 391.0 337 58.5
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 2.3e-106 390.2 417 50.4
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 6.3e-104 382.1 347 57.6
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 8.2e-104 381.7 390 52.3
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 1.8e-103 380.6 445 49.4
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 3.1e-103 379.8 267 71.5
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 7.0e-95 352.1 451 46.1
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 8.2e-88 328.6 278 61.5
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 4.2e-84 316.2 458 42.4
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 7.2e-84 315.5 373 50.4
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 2.8e-80 303.5 296 53.7
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.3e-61 241.5 416 38.7
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 4.7e-59 233.0 269 50.6
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 6.4e-48 196.1 197 54.3
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 1.9e-47 194.5 209 49.3
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.1e-46 191.0 141 66.0
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 1.4e-42 178.3 342 29.8
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 6.8e-42 176.0 169 56.2
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 2.0e-41 174.5 198 49.5
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 1.8e-34 151.4 196 41.3
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 9.3e-31 139.0 113 64.6
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 1.3e-29 135.2 155 45.8
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 2.8e-27 127.5 142 52.8
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 1.4e-26 125.2 138 55.1
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 4.4e-25 120.2 135 48.1
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 2.2e-24 117.9 84 75.0
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 6.4e-24 116.3 78 66.7
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 8.4e-24 115.9 112 58.0
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.6e-22 111.7 97 55.7
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 1.5e-20 105.1 72 56.9
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 1.3e-19 102.1 69 71.0
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 1.8e-18 98.2 69 65.2
Psat1g128400 Pisum sativum HOM05D006809 ORTHO05D008609 3.5e-14 84.0 55 72.7
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 1.8e-13 81.6 60 73.3
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 1.3e-08 65.5 40 72.5
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 3.2e-07 60.8 55 54.5
Gorai.010G256300 Gossypium raimondii HOM05D000836 ORTHO05D000709 3.5e-06 57.4 173 25.4
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 3.5e-06 57.4 38 60.5
Gohir.A02G123800 Gossypium hirsutum HOM05D003006 ORTHO05D003438 6.0e-06 56.6 212 22.6


User provided reference genes

Program Settings