Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.0e-102 376.7 186 100.0
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 2.1e-79 299.3 186 76.3
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 2.1e-79 299.3 185 74.6
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 4.6e-79 298.1 181 76.8
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.8e-78 296.2 177 79.7
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 2.3e-78 295.8 186 73.1
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 3.3e-77 292.0 185 75.1
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 5.6e-77 291.2 178 77.5
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 2.1e-76 289.3 186 74.7
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 3.7e-76 288.5 178 76.4
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.7e-76 288.5 177 76.8
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 4.8e-76 288.1 178 76.4
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 4.8e-76 288.1 178 76.4
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.4e-75 286.6 178 75.8
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 9.0e-75 283.9 178 76.4
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 2.0e-74 282.7 178 73.0
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 2.0e-74 282.7 178 75.8
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 4.5e-74 281.6 178 74.7
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 4.5e-74 281.6 178 74.2
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 4.5e-74 281.6 178 71.9
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 4.5e-74 281.6 178 75.3
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 5.8e-74 281.2 178 72.5
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 5.8e-74 281.2 178 75.8
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 5.8e-74 281.2 178 74.7
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 7.6e-74 280.8 178 74.7
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.0e-73 280.4 178 74.2
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 178 73.6
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 1.7e-73 279.6 178 72.5
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.7e-73 279.6 178 74.7
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.7e-73 279.6 178 74.7
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.2e-73 279.3 178 74.7
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 2.2e-73 279.3 178 71.9
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.2e-73 279.3 178 73.0
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.9e-73 278.9 178 73.6
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 3.8e-73 278.5 178 74.7
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 3.8e-73 278.5 178 74.7
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 4.9e-73 278.1 178 71.3
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.9e-73 278.1 178 74.2
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.9e-73 278.1 178 73.0
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 6.5e-73 277.7 177 74.0
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.4e-73 277.3 178 73.6
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.4e-72 276.6 179 73.2
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.4e-72 276.6 178 71.3
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.5e-72 275.8 178 72.5
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.5e-72 275.8 178 72.5
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.5e-72 275.8 177 74.0
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 3.2e-72 275.4 178 73.0
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 4.2e-72 275.0 177 71.2
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 5.5e-72 274.6 174 73.6
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 5.5e-72 274.6 178 72.5
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 5.5e-72 274.6 178 71.3
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 7.1e-72 274.2 179 73.2
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.2e-71 273.5 178 71.3
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.2e-71 273.5 178 71.3
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.2e-71 273.5 174 73.6
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.2e-71 273.5 178 73.0
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.2e-71 273.5 186 68.8
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.6e-71 273.1 178 71.9
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.6e-71 273.1 178 71.3
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 2.7e-71 272.3 178 70.8
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 6.0e-71 271.2 178 72.5
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 1.0e-70 270.4 178 72.5
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.0e-70 270.4 178 70.2
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.8e-70 269.6 178 70.8
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.3e-70 269.2 178 71.3
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 3.0e-70 268.9 178 70.8
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 3.9e-70 268.5 178 71.3
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 8.7e-70 267.3 178 69.7
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 8.7e-70 267.3 178 71.3
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-69 266.9 178 73.0
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.1e-69 266.9 176 71.0
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.5e-69 266.5 178 69.7
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.9e-69 266.2 178 71.3
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 3.3e-69 265.4 178 69.7
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.3e-69 265.0 178 68.5
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 5.7e-69 264.6 178 69.1
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 5.7e-69 264.6 178 71.9
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 7.4e-69 264.2 178 69.1
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.3e-68 263.5 178 68.0
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.3e-68 263.5 178 68.0
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.3e-68 263.5 178 68.5
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.2e-68 262.7 178 69.7
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 2.2e-68 262.7 178 69.1
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 2.8e-68 262.3 178 68.5
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 2.8e-68 262.3 178 68.0
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.8e-68 262.3 178 68.5
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 2.8e-68 262.3 178 69.7
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 4.8e-68 261.5 178 69.7
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.8e-68 261.5 177 68.9
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.8e-68 261.5 178 68.5
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 4.8e-68 261.5 178 71.3
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 6.9e-67 257.7 178 69.7
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 6.9e-67 257.7 178 69.7
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 6.9e-67 257.7 178 69.7
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 9.0e-67 257.3 178 68.5
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.2e-66 256.9 178 66.9
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 2.0e-66 256.1 178 67.4
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.0e-66 256.1 178 66.9
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.0e-66 256.1 178 66.9
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.6e-66 255.8 178 66.9
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 2.6e-66 255.8 178 66.3
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 3.4e-66 255.4 178 66.3
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.0e-65 253.8 177 66.7
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.0e-65 253.8 174 69.0
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.3e-65 253.4 178 65.7
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 3.8e-65 251.9 178 66.9
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 3.8e-65 251.9 178 66.9
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 1.1e-64 250.4 178 61.8
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 5.5e-64 248.1 187 66.3
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 5.5e-64 248.1 182 65.4
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 7.2e-64 247.7 174 66.1
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.2e-63 246.9 179 64.8
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.3e-62 242.7 179 64.8
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.3e-62 242.7 179 63.7
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 3.9e-62 241.9 179 63.1
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 6.7e-62 241.1 170 67.1
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-61 240.4 178 63.5
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.1e-61 240.4 175 65.1
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.1e-61 240.4 175 65.1
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 2.0e-61 239.6 180 66.7
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.7e-60 236.5 178 63.5
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 1.7e-60 236.5 177 65.5
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.8e-60 235.7 178 62.4
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 8.2e-60 234.2 179 61.5
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 1.8e-59 233.0 177 64.4
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 4.1e-59 231.9 176 62.5
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 4.1e-59 231.9 178 65.2
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.2e-58 230.3 177 63.8
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 2.1e-55 219.5 185 58.9
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 8.2e-52 207.6 184 53.3
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.2e-50 203.8 176 56.8
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 8.5e-49 197.6 178 57.9
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 3.2e-48 195.7 182 56.0
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 2.0e-45 186.4 159 58.5
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.2e-44 183.0 195 50.8
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-43 180.6 121 68.6
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.8e-43 179.9 170 52.4
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.1e-40 170.6 118 65.3
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 3.1e-35 152.5 179 41.3
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.3e-25 119.8 99 57.6
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.5e-24 117.1 102 57.8
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.3e-22 109.8 76 71.1
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 1.1e-19 100.9 164 35.4
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 2.0e-10 70.1 55 56.4
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 2.0e-10 70.1 55 56.4
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 7.8e-10 68.2 50 62.0
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 5.2e-06 55.5 38 68.4


User provided reference genes

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