Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 1.6e-183 646.0 328 100.0
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 6.5e-145 517.7 328 82.3
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 4.2e-144 515.0 328 81.4
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 4.2e-144 515.0 328 81.4
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 8.0e-143 510.8 328 80.5
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 1.5e-141 506.5 328 80.2
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.5e-141 506.5 326 80.4
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 7.7e-138 494.2 326 77.9
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.0e-137 493.8 326 77.3
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 1.3e-137 493.4 325 78.8
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.3e-137 493.4 326 77.3
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.1e-136 490.3 326 76.7
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.5e-136 490.0 326 76.7
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.9e-136 489.6 327 77.7
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.5e-136 489.2 326 76.7
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 5.6e-136 488.0 322 77.6
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 7.3e-136 487.6 325 77.8
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.6e-135 486.5 326 76.1
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 4.7e-135 485.0 322 77.3
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 1.0e-134 483.8 327 76.5
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 1.4e-134 483.4 334 76.0
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 1.8e-134 483.0 324 77.2
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 2.3e-134 482.6 322 76.7
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 3.0e-134 482.3 322 76.4
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 3.0e-134 482.3 326 76.7
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 5.2e-134 481.5 326 76.7
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 8.9e-134 480.7 325 77.2
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.2e-133 480.3 326 76.4
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.0e-133 479.6 327 75.8
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.4e-133 478.8 325 76.3
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 3.4e-133 478.8 325 76.3
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 4.4e-133 478.4 322 76.1
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 4.4e-133 478.4 322 77.0
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 5.7e-133 478.0 325 76.0
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 5.7e-133 478.0 328 75.6
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 9.8e-133 477.2 319 77.7
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.3e-132 476.9 328 74.1
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.3e-132 476.9 327 75.5
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.7e-132 476.5 328 75.3
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 2.2e-132 476.1 328 73.8
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.2e-132 476.1 328 75.6
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 2.9e-132 475.7 322 75.5
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 3.7e-132 475.3 325 76.6
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 4.9e-132 474.9 322 76.7
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 6.4e-132 474.6 328 73.8
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 6.4e-132 474.6 322 76.4
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 1.4e-131 473.4 323 75.9
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.4e-131 473.4 322 77.0
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 4.1e-131 471.9 327 74.3
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 4.1e-131 471.9 323 76.2
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 5.4e-131 471.5 328 74.7
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 9.2e-131 470.7 322 75.8
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 2.0e-130 469.5 322 75.8
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 2.7e-130 469.2 323 74.0
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 7.8e-130 467.6 322 74.8
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.0e-129 467.2 329 72.9
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.0e-129 467.2 327 75.2
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.3e-129 466.8 325 75.1
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 1.7e-129 466.5 322 75.2
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 2.3e-129 466.1 329 73.9
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 3.9e-129 465.3 325 72.6
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 3.9e-129 465.3 325 73.2
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 5.0e-129 464.9 323 75.2
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.1e-128 463.8 325 74.8
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 1.1e-128 463.8 306 79.1
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 1.9e-128 463.0 323 73.7
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 2.5e-128 462.6 325 72.3
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 2.5e-128 462.6 325 72.3
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 2.5e-128 462.6 325 72.3
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 2.5e-128 462.6 325 74.5
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 5.6e-128 461.5 325 72.0
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 5.6e-128 461.5 325 72.0
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 7.3e-128 461.1 327 73.7
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 7.3e-128 461.1 325 74.5
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 7.3e-128 461.1 327 73.4
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 7.3e-128 461.1 327 74.3
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 9.5e-128 460.7 329 72.9
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 9.5e-128 460.7 329 72.9
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 1.2e-127 460.3 322 73.3
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 1.6e-127 459.9 325 74.8
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 2.1e-127 459.5 329 73.3
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 2.1e-127 459.5 329 72.6
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 2.1e-127 459.5 325 74.2
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 2.1e-127 459.5 325 74.8
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 2.8e-127 459.1 329 72.9
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 3.6e-127 458.8 322 73.3
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 4.7e-127 458.4 325 74.2
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 6.2e-127 458.0 322 74.2
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 8.0e-127 457.6 329 72.9
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 8.0e-127 457.6 327 73.4
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 4.0e-126 455.3 329 72.3
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 6.8e-126 454.5 329 72.3
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 8.9e-126 454.1 329 72.3
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 1.5e-125 453.4 322 71.4
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.5e-125 453.4 329 72.0
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 2.0e-125 453.0 329 72.0
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 4.4e-125 451.8 326 71.8
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 9.8e-125 450.7 322 71.7
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 9.8e-125 450.7 322 70.5
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 4.9e-124 448.4 322 70.2
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 6.4e-124 448.0 328 72.3
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.1e-123 447.2 322 72.7
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 5.4e-123 444.9 322 70.5
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 6.0e-122 441.4 328 68.6
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 6.0e-122 441.4 340 69.7
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.0e-121 439.1 323 71.8
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 6.6e-121 438.0 338 69.8
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 8.6e-121 437.6 322 69.3
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 1.9e-120 436.4 322 69.9
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 3.3e-120 435.6 319 69.0
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 1.2e-119 433.7 322 68.6
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 2.8e-119 432.6 326 69.9
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 3.6e-119 432.2 319 69.0
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 1.1e-118 430.6 309 72.8
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.8e-118 429.9 325 70.5
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 2.3e-118 429.5 343 67.3
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 6.8e-118 427.9 293 76.1
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 1.2e-117 427.2 319 67.7
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.5e-117 426.8 324 71.9
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.5e-117 426.8 480 53.3
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 4.4e-117 425.2 327 71.3
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 5.8e-117 424.9 325 69.8
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 8.3e-116 421.0 322 68.0
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 1.1e-115 420.6 324 68.2
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 3.2e-115 419.1 328 68.9
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 2.7e-114 416.0 327 67.3
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 3.3e-112 409.1 327 66.1
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.6e-111 406.8 319 65.2
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 4.7e-111 405.2 329 65.7
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 8.1e-111 404.4 329 65.7
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 8.1e-111 404.4 327 66.1
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 2.2e-108 396.4 326 64.7
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 3.7e-108 395.6 264 77.3
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 8.4e-108 394.4 268 75.0
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 4.1e-107 392.1 288 69.4
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.0e-105 387.5 323 61.3
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.3e-105 386.3 332 62.0
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 6.6e-105 384.8 323 60.7
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 6.6e-105 384.8 328 61.9
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 1.1e-104 384.0 292 68.2
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 4.3e-104 382.1 323 60.4
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 2.1e-103 379.8 321 59.5
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 2.3e-97 359.8 330 61.8
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 3.6e-95 352.4 264 69.3
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 4.6e-90 335.5 203 82.8
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 7.9e-90 334.7 326 55.2
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 3.1e-78 296.2 320 50.9
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.4e-75 287.3 305 56.4
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 1.1e-70 271.2 325 46.2
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 2.6e-69 266.5 322 45.3
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 7.9e-66 255.0 319 43.3
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.3e-65 253.4 316 43.7
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.8e-63 246.5 196 65.3
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 2.0e-56 223.8 154 70.8
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 2.2e-55 220.3 113 94.7
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 6.3e-55 218.8 151 75.5
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.0e-44 184.9 175 60.6
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.8e-22 110.9 81 72.8
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.8e-22 110.9 76 75.0
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 2.4e-22 110.5 165 43.0
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 3.1e-22 110.2 117 54.7
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 1.3e-20 104.8 66 77.3
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 1.7e-20 104.4 196 37.8
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.9e-20 103.6 76 72.4
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 8.6e-20 102.1 75 69.3
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 3.3e-19 100.1 52 90.4
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 9.5e-19 98.6 57 84.2
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 4.7e-18 96.3 70 70.0
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 4.0e-17 93.2 82 63.4
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 4.1e-14 83.2 58 69.0
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 4.1e-14 83.2 58 69.0
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 9.5e-11 72.0 52 71.2
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 2.9e-07 60.5 36 69.4
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 3.7e-07 60.1 60 60.0
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 3.2e-06 57.0 38 73.7


User provided reference genes

Program Settings