Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold295G47522 Striga asiatica HOM05D004510 ORTHO05D005302 0.0e+00 1432.9 705 100.0
Migut.N02488 Erythranthe guttata HOM05D004510 ORTHO05D005302 0.0e+00 1075.8 791 70.3
SalBow3G0413 Salvia bowleyana HOM05D004510 ORTHO05D005302 1.8e-304 1048.9 791 68.8
Oeu035565.1 Olea europaea HOM05D004510 ORTHO05D005302 5.0e-291 1004.2 787 66.1
CSS0020343 Camellia sinensis var. sinensis HOM05D004510 ORTHO05D005302 1.9e-282 975.7 787 64.0
Hma1.2p1_0587F.1_g184290 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 6.7e-280 967.2 794 64.0
Cc01_g09050 Coffea canephora HOM05D004510 ORTHO05D005302 7.4e-279 963.8 787 63.5
Nitab4.5_0012235g0010 Nicotiana tabacum HOM05D004510 ORTHO05D005302 2.8e-278 961.8 787 63.5
CiPaw.13G135100 Carya illinoinensis HOM05D004510 ORTHO05D005302 4.1e-277 958.0 787 62.8
Sopen11g027210 Solanum pennellii HOM05D004510 ORTHO05D005302 3.4e-276 954.9 787 63.0
Solyc11g068500.2 Solanum lycopersicum HOM05D004510 ORTHO05D005302 4.5e-276 954.5 787 63.2
vmacro03323 Vaccinium macrocarpon HOM05D004510 ORTHO05D005302 7.7e-276 953.7 823 60.6
QL01p012154 Quercus lobata HOM05D004510 ORTHO05D005302 8.5e-275 950.3 787 62.5
CAN.G1524.4 Capsicum annuum HOM05D004510 ORTHO05D005302 1.9e-274 949.1 787 62.9
Actinidia24221 Actinidia chinensis HOM05D004510 ORTHO05D005302 9.4e-274 946.8 787 62.4
Duzib150G0176 Durio zibethinus HOM05D004510 ORTHO05D005302 1.6e-273 946.0 788 62.4
Manes.11G162300 Manihot esculenta HOM05D004510 ORTHO05D005302 2.1e-273 945.7 787 62.3
Nn6g34880 Nelumbo nucifera HOM05D004510 ORTHO05D005302 2.1e-273 945.7 794 62.6
GSVIVG01036116001 Vitis vinifera HOM05D004510 ORTHO05D005302 2.1e-273 945.7 787 62.0
TAR623G1468 Trochodendron aralioides HOM05D004510 ORTHO05D005302 3.6e-273 944.9 787 62.8
DCAR_010345 Daucus carota HOM05D004510 ORTHO05D005302 6.1e-273 944.1 787 62.6
Prupe.6G130700 Prunus persica HOM05D004510 ORTHO05D005302 1.0e-272 943.3 788 61.7
Peaxi162Scf00040g00020 Petunia axillaris HOM05D004510 ORTHO05D005302 1.4e-272 943.0 787 62.6
PGSC0003DMG400026338 Solanum tuberosum HOM05D004510 ORTHO05D005302 2.3e-272 942.2 813 61.1
RcHm_v2.0_Chr5g0044841 Rosa chinensis HOM05D004510 ORTHO05D005302 1.1e-271 939.9 788 61.7
PGR102G0622 Punica granatum HOM05D004510 ORTHO05D005302 2.0e-271 939.1 788 61.5
FAN21G2427 Fragaria x ananassa HOM05D004510 ORTHO05D005302 3.3e-271 938.3 789 62.0
MD03G1145900 Malus domestica HOM05D004510 ORTHO05D005302 4.4e-271 937.9 788 61.3
Potri.004G201800 Populus trichocarpa HOM05D004510 ORTHO05D005302 5.7e-271 937.6 787 61.9
Thecc.09G282400 Theobroma cacao HOM05D004510 ORTHO05D005302 1.3e-270 936.4 788 61.5
FAN11G3425 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.7e-270 936.0 789 62.0
Hund18760 Selenicereus undatus HOM05D004510 ORTHO05D005302 3.7e-270 934.9 788 61.5
CANSAT54G0764 Cannabis sativa HOM05D004510 ORTHO05D005302 6.3e-270 934.1 788 61.3
CsaV3_1G014870 Cucumis sativus L. HOM05D004510 ORTHO05D005302 1.1e-269 933.3 787 61.6
MELO3C004700.2 Cucumis melo HOM05D004510 ORTHO05D005302 1.4e-269 932.9 787 61.6
Potri.009G163300 Populus trichocarpa HOM05D004510 ORTHO05D005302 7.0e-269 930.6 787 61.4
Gorai.004G010100 Gossypium raimondii HOM05D004510 ORTHO05D005302 9.1e-269 930.2 789 61.3
PSO339G0142 Papaver somniferum HOM05D004510 ORTHO05D005302 9.1e-269 930.2 791 61.6
Atru.chr3.3236 Acer truncatum HOM05D004510 ORTHO05D005302 1.2e-268 929.9 787 61.0
Gohir.D08G015800 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.0e-268 929.1 789 61.2
Medtr4g052930 Medicago truncatula HOM05D004510 ORTHO05D005302 2.0e-268 929.1 789 61.7
Ca_19411_v3 Cicer arietinum L. HOM05D004510 ORTHO05D005302 2.6e-268 928.7 790 61.5
Eucgr.B03845 Eucalyptus grandis HOM05D004510 ORTHO05D005302 4.5e-268 927.9 788 60.9
Gohir.A08G005400 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.5e-268 927.9 789 61.2
PSO384G2406 Papaver somniferum HOM05D004510 ORTHO05D005302 1.7e-267 926.0 791 61.6
Sabra04G0136400 Salix brachista HOM05D004510 ORTHO05D005302 1.7e-267 926.0 787 61.4
Phvul.011G094800 Phaseolus vulgaris HOM05D004510 ORTHO05D005302 5.0e-267 924.5 789 61.0
Glyma.12G089700 Glycine max HOM05D004510 ORTHO05D005302 6.5e-267 924.1 789 61.3
Sed0027037 Sechium edule HOM05D004510 ORTHO05D005302 2.5e-266 922.2 787 60.9
Ciclev10027862m.g Citrus clementina HOM05D004510 ORTHO05D005302 3.2e-266 921.8 821 59.0
Psat7g187800 Pisum sativum HOM05D004510 ORTHO05D005302 3.2e-266 921.8 790 61.0
arahy.Tifrunner.gnm1.ann1.G66SVD Arachis hypogaea HOM05D004510 ORTHO05D005302 9.4e-266 920.2 787 60.7
VMungo1127G0197 Vigna mungo HOM05D004510 ORTHO05D005302 9.4e-266 920.2 789 60.6
Lj1C236G5 Lonicera japonica HOM05D004510 ORTHO05D005302 1.2e-265 919.8 920 55.3
AUR62009750 Chenopodium quinoa HOM05D004510 ORTHO05D005302 1.6e-265 919.5 788 60.8
arahy.Tifrunner.gnm1.ann1.CJK6JS Arachis hypogaea HOM05D004510 ORTHO05D005302 2.1e-265 919.1 787 60.7
Sabra09G0127400 Salix brachista HOM05D004510 ORTHO05D005302 2.1e-265 919.1 787 60.5
Lj3g0009034 Lotus japonicus HOM05D004510 ORTHO05D005302 1.0e-264 916.8 787 60.7
Rhsim13G0112600 Rhododendron simsii HOM05D004510 ORTHO05D005302 1.0e-264 916.8 845 57.6
TPR.G17233 Trifolium pratense HOM05D004510 ORTHO05D005302 1.4e-264 916.4 788 60.8
AT2G27460 Arabidopsis thaliana HOM05D004510 ORTHO05D005302 8.8e-264 913.7 788 60.2
Glyma.11G182800 Glycine max HOM05D004510 ORTHO05D005302 1.1e-263 913.3 789 60.7
AUR62036195 Chenopodium quinoa HOM05D004510 ORTHO05D005302 1.5e-263 912.9 788 60.5
HanXRQChr16g0526961 Helianthus annuus HOM05D004510 ORTHO05D005302 1.5e-263 912.9 787 60.1
Aa31LG5G8800 Aethionema arabicum HOM05D004510 ORTHO05D005302 5.7e-263 911.0 815 58.5
Aqoxy4G02763 Aquilegia oxysepala HOM05D004510 ORTHO05D005302 2.8e-262 908.7 787 61.2
TWI31G0469 Tripterygium wilfordii HOM05D004510 ORTHO05D005302 3.7e-262 908.3 787 60.2
COL.COLO4_19854 Corchorus olitorius HOM05D004510 ORTHO05D005302 4.8e-262 907.9 767 61.9
FAN16G1814 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.1e-261 906.7 788 60.2
Sp4g10250 Schrenkiella parvula HOM05D004510 ORTHO05D005302 1.1e-261 906.7 788 60.2
Lalb_Chr03g0028121 Lupinus albus HOM05D004510 ORTHO05D005302 2.4e-261 905.6 791 60.1
HPP92_011904 Vanilla planifolia HOM05D004510 ORTHO05D005302 4.1e-261 904.8 787 59.8
AL4G21450 Arabidopsis lyrata HOM05D004510 ORTHO05D005302 7.0e-261 904.0 788 59.4
FAN25G2046 Fragaria x ananassa HOM05D004510 ORTHO05D005302 1.2e-260 903.3 788 59.9
HanXRQChr13g0397471 Helianthus annuus HOM05D004510 ORTHO05D005302 1.6e-260 902.9 787 58.8
A04p20970 Brassica napus HOM05D004510 ORTHO05D005302 4.5e-260 901.4 789 60.1
BraA04t17666Z Brassica rapa HOM05D004510 ORTHO05D005302 4.5e-260 901.4 789 60.1
THA.LOC104815723 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 4.5e-260 901.4 788 59.9
BcaB02g10090 Brassica carinata HOM05D004510 ORTHO05D005302 5.9e-260 901.0 788 59.6
Thhalv10016271m.g Eutrema salsugineum HOM05D004510 ORTHO05D005302 1.3e-259 899.8 788 59.4
Carub.0004s0808 Capsella rubella HOM05D004510 ORTHO05D005302 2.2e-259 899.0 788 59.5
C04p24140 Brassica napus HOM05D004510 ORTHO05D005302 6.5e-259 897.5 787 59.7
BolC4t23911H Brassica oleracea HOM05D004510 ORTHO05D005302 6.5e-259 897.5 787 59.7
CARHR120110 Cardamine hirsuta HOM05D004510 ORTHO05D005302 6.5e-259 897.5 788 59.3
Lsat_1_v5_gn_6_38881 Lactuca sativa HOM05D004510 ORTHO05D005302 2.5e-258 895.6 787 58.6
Lalb_Chr19g0136431 Lupinus albus HOM05D004510 ORTHO05D005302 2.5e-258 895.6 791 59.7
BraA07t29538Z Brassica rapa HOM05D004510 ORTHO05D005302 3.2e-258 895.2 792 59.5
BcaC02g10877 Brassica carinata HOM05D004510 ORTHO05D005302 4.2e-258 894.8 788 59.6
BolC4t27208H Brassica oleracea HOM05D004510 ORTHO05D005302 4.2e-258 894.8 789 59.4
EL10Ac7g15829 Beta vulgaris HOM05D004510 ORTHO05D005302 5.5e-258 894.4 830 57.3
A07p18220 Brassica napus HOM05D004510 ORTHO05D005302 9.4e-258 893.6 788 59.4
C04p56760 Brassica napus HOM05D004510 ORTHO05D005302 9.4e-258 893.6 789 59.3
ECA233G5657 Erigeron canadensis HOM05D004510 ORTHO05D005302 8.0e-257 890.6 788 58.4
CDE06G1114 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 5.7e-255 884.4 787 59.3
THA.LOC104826427 Tarenaya hassleriana HOM05D004510 ORTHO05D005302 8.3e-254 880.6 787 58.4
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 3.1e-253 878.6 782 59.6
ATR0776G017 Amborella trichopoda HOM05D004510 ORTHO05D005302 4.1e-253 878.2 788 59.5
SEGI_33849 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 1.5e-247 859.8 787 57.4
Sc21g0007070 Simmondsia chinensis HOM05D004510 ORTHO05D005302 4.7e-233 811.6 728 58.9
Zm00001eb288910 Zea mays HOM05D004510 ORTHO05D005302 6.0e-228 794.7 789 53.9
Ah.08g215670 Amaranthus hybridus HOM05D004510 ORTHO05D005302 6.8e-224 781.2 788 54.2
Os05g0443300 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 2.0e-223 779.6 788 52.9
Zm00001eb348320 Zea mays HOM05D004510 ORTHO05D005302 7.5e-223 777.7 793 52.7
Mapoly0020s0029 Marchantia polymorpha HOM05D004510 ORTHO05D005302 5.4e-221 771.5 797 50.8
Pp3c9_6480 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.0e-219 767.3 800 51.4
Gorai.009G085000 Gossypium raimondii HOM05D004510 ORTHO05D005302 6.4e-214 748.0 783 53.5
Dinv22838 Davidia involucrata HOM05D004510 ORTHO05D005302 2.4e-213 746.1 645 60.8
MD11G1164800 Malus domestica HOM05D004510 ORTHO05D005302 1.9e-210 736.5 631 61.3
Pp3c9_12900 Physcomitrium patens HOM05D004510 ORTHO05D005302 4.3e-210 735.3 797 50.3
AagrBONN_evm.TU.Sc2ySwM_369.588 Anthoceros agrestis HOM05D004510 ORTHO05D005302 2.3e-203 713.0 777 49.3
Gohir.A05G080300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 4.3e-202 708.8 797 50.8
Gohir.D05G083300 Gossypium hirsutum HOM05D004510 ORTHO05D005302 2.0e-199 699.9 642 59.8
SMO119G0407 Selaginella moellendorffii HOM05D004510 ORTHO05D005302 1.2e-196 690.6 787 48.2
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 3.5e-196 689.1 565 62.5
Os04g0412900 Oryza sativa ssp. japonica HOM05D004510 ORTHO05D005302 2.1e-193 679.9 789 48.3
FvH4_3g24980 Fragaria vesca HOM05D004510 ORTHO05D005302 6.0e-188 661.8 547 62.9
SGA_v2.0_scaffold177G39411 Striga asiatica HOM05D004510 ORTHO05D005302 1.6e-185 653.7 381 86.1
CBR_g98 Chara braunii HOM05D004510 ORTHO05D005302 1.4e-173 614.0 833 42.5
Nitab4.5_0000755g0090 Nicotiana tabacum HOM05D004510 ORTHO05D005302 5.0e-166 589.0 372 77.2
Dinv42548 Davidia involucrata HOM05D004510 ORTHO05D005302 3.6e-164 582.8 570 54.9
CDE08G1408 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 4.2e-141 506.1 342 72.2
ClCG01G011910 Citrullus lanatus HOM05D004510 ORTHO05D005302 1.1e-133 481.5 480 54.0
SHI33806 Sapria himalayana HOM05D000105 ORTHO05D000023 6.1e-124 449.1 375 60.0
ClCG01G011880 Citrullus lanatus HOM05D004510 ORTHO05D005302 3.4e-122 443.4 276 77.9
RcHm_v2.0_Chr5g0045601 Rosa chinensis HOM05D004510 ORTHO05D005302 1.2e-119 434.9 301 71.8
RcHm_v2.0_Chr5g0040981 Rosa chinensis HOM05D004510 ORTHO05D005302 2.2e-113 414.1 274 74.5
Zm00001eb421940 Zea mays HOM05D004510 ORTHO05D005302 1.4e-112 411.4 374 56.1
CDE08G0681 Ceratophyllum demersum HOM05D004510 ORTHO05D005302 5.1e-102 376.3 312 62.5
Cpa.g.sc3326.1 Carica papaya HOM05D004510 ORTHO05D005302 4.9e-97 359.8 251 70.5
PRCOL_00001783 Prasinoderma coloniale HOM05D004510 ORTHO05D005302 4.6e-95 353.2 818 32.2
MCO07G305 Micromonas commoda HOM05D004510 ORTHO05D005302 6.0e-95 352.8 847 29.5
Pp3c9_6470 Physcomitrium patens HOM05D004510 ORTHO05D005302 6.6e-86 322.8 234 67.9
Cpa.g.sc32.21 Carica papaya HOM05D004510 ORTHO05D005302 2.1e-84 317.8 320 54.4
Cpa.g.sc2302.1 Carica papaya HOM05D004510 ORTHO05D005302 6.9e-59 233.0 142 79.6
Migut.I00819 Erythranthe guttata HOM05D000103 ORTHO05D000049 3.1e-51 207.6 108 84.3
Hma1.2p1_0063F.1_g034470 Hydrangea macrophylla HOM05D004510 ORTHO05D005302 6.9e-51 206.5 136 77.2
Oeu040835.1 Olea europaea HOM05D000119 ORTHO05D000054 1.0e-49 202.6 174 56.9
Haze_23368 Corylus avellana HOM05D004510 ORTHO05D005302 1.1e-45 189.1 174 54.0
RcHm_v2.0_Chr1g0324351 Rosa chinensis HOM05D004510 ORTHO05D005302 2.9e-41 174.5 234 43.2
MBI17_g08333_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.3e-33 149.1 96 75.0
RcHm_v2.0_Chr5g0044471 Rosa chinensis HOM05D004510 ORTHO05D005302 1.3e-33 149.1 108 68.5
Gorai.007G089400 Gossypium raimondii HOM05D004510 ORTHO05D005302 1.8e-27 128.6 69 79.7
Gohir.D06G076550 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.0e-25 122.9 69 76.8
RcHm_v2.0_Chr5g0044481 Rosa chinensis HOM05D004510 ORTHO05D005302 3.8e-25 120.9 64 82.8
Gohir.D11G227001 Gossypium hirsutum HOM05D004510 ORTHO05D005302 8.5e-25 119.8 59 84.7
RcHm_v2.0_Chr5g0016631 Rosa chinensis HOM05D004510 ORTHO05D005302 8.5e-25 119.8 87 67.8
RcHm_v2.0_Chr5g0016621 Rosa chinensis HOM05D004510 ORTHO05D005302 9.4e-24 116.3 66 77.3
CSS0032823 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D005302 2.0e-21 108.6 80 66.2
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 9.8e-21 106.3 70 77.1
Gohir.D06G132050 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.2e-18 99.4 49 85.7
RcHm_v2.0_Chr5g0040971 Rosa chinensis HOM05D004510 ORTHO05D005302 2.7e-18 98.2 49 85.7
SEGI_10684 Sequoiadendron giganteum HOM05D004510 ORTHO05D005302 1.0e-17 96.3 82 62.2
BcaB01g01177 Brassica carinata HOM05D004510 ORTHO05D005302 3.8e-17 94.4 82 56.1
Gohir.D11G083850 Gossypium hirsutum HOM05D004510 ORTHO05D005302 5.5e-16 90.5 61 68.9
Pp3c2_38440 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.2e-10 72.8 100 40.0
Pp3c23_90 Physcomitrium patens HOM05D004510 ORTHO05D005302 1.3e-09 69.3 97 39.2
Pp3c17_10 Physcomitrium patens HOM05D004510 ORTHO05D005302 5.0e-09 67.4 95 38.9
Pp3c26_15780 Physcomitrium patens HOM05D004510 ORTHO05D005302 6.1e-07 60.5 96 37.5
Gohir.D11G215501 Gossypium hirsutum HOM05D004510 ORTHO05D005302 1.0e-06 59.7 29 86.2
ECA246G2410 Erigeron canadensis HOM05D004510 ORTHO05D005302 4.0e-06 57.8 36 83.3


User provided reference genes

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