Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold289G47250 Striga asiatica HOM05D004477 ORTHO05D005615 3.8e-73 278.1 142 100.0
MSTRG.2896 Avicennia marina HOM05D004477 ORTHO05D005615 2.4e-27 125.9 108 66.7
Oeu049664.1 Olea europaea HOM05D004477 ORTHO05D005615 4.5e-26 121.7 135 57.0
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 5.9e-26 121.3 108 65.7
Nitab4.5_0000624g0090 Nicotiana tabacum HOM05D004477 ORTHO05D005615 1.0e-25 120.6 110 61.8
TWI15G0640 Tripterygium wilfordii HOM05D004477 ORTHO05D005615 1.0e-25 120.6 108 63.9
Cpa.g.sc51.97 Carica papaya HOM05D004477 ORTHO05D005615 2.2e-25 119.4 108 63.0
Nitab4.5_0021326g0010 Nicotiana tabacum HOM05D004477 ORTHO05D005615 2.2e-25 119.4 108 63.0
Atru.chr3.2871 Acer truncatum HOM05D004477 ORTHO05D005615 5.0e-25 118.2 108 62.0
CDE05G2398 Ceratophyllum demersum HOM05D004477 ORTHO05D005615 5.0e-25 118.2 108 63.9
Ciclev10032276m.g Citrus clementina HOM05D004477 ORTHO05D005615 5.0e-25 118.2 108 62.0
Potri.001G024500 Populus trichocarpa HOM05D004477 ORTHO05D005615 5.0e-25 118.2 108 63.0
Potri.003G201100 Populus trichocarpa HOM05D004477 ORTHO05D005615 5.0e-25 118.2 108 63.0
Sabra03G0148700 Salix brachista HOM05D004477 ORTHO05D005615 5.0e-25 118.2 108 63.0
SGA_v2.0_scaffold162G37895 Striga asiatica HOM05D004477 ORTHO05D005615 5.0e-25 118.2 63 95.2
SGA_v2.0_scaffold20G09066 Striga asiatica HOM05D004477 ORTHO05D005615 5.0e-25 118.2 63 95.2
Thecc.10G006900 Theobroma cacao HOM05D004477 ORTHO05D005615 5.0e-25 118.2 108 63.0
vmacro13733 Vaccinium macrocarpon HOM05D004477 ORTHO05D005615 5.0e-25 118.2 107 60.7
Actinidia06268 Actinidia chinensis HOM05D004477 ORTHO05D005615 8.5e-25 117.5 108 62.0
Manes.11G003480 Manihot esculenta HOM05D004477 ORTHO05D005615 1.5e-24 116.7 108 62.0
Solyc01g007250.4 Solanum lycopersicum HOM05D004477 ORTHO05D005615 1.5e-24 116.7 108 63.0
Sopen01g003240 Solanum pennellii HOM05D004477 ORTHO05D005615 1.5e-24 116.7 108 63.0
PGSC0003DMG400000394 Solanum tuberosum HOM05D004477 ORTHO05D005615 1.5e-24 116.7 108 63.0
PGSC0003DMG400016389 Solanum tuberosum HOM05D004477 ORTHO05D005615 1.5e-24 116.7 108 63.0
THA.LOC104824184 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 1.5e-24 116.7 108 62.0
CSS0003663 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 1.9e-24 116.3 108 60.2
CSS0028927 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 1.9e-24 116.3 108 60.2
Cc06_g06430 Coffea canephora HOM05D004477 ORTHO05D005615 1.9e-24 116.3 108 62.0
HanXRQChr15g0469031 Helianthus annuus HOM05D004477 ORTHO05D005615 1.9e-24 116.3 108 62.0
GSVIVG01000834001 Vitis vinifera HOM05D004477 ORTHO05D005615 1.9e-24 116.3 108 61.1
arahy.Tifrunner.gnm1.ann1.95EFUZ Arachis hypogaea HOM05D004477 ORTHO05D005615 2.5e-24 115.9 108 61.1
arahy.Tifrunner.gnm1.ann1.T70L3V Arachis hypogaea HOM05D004477 ORTHO05D005615 2.5e-24 115.9 108 61.1
THA.LOC104800270 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 2.5e-24 115.9 108 61.1
TAR633G1412 Trochodendron aralioides HOM05D004477 ORTHO05D005615 2.5e-24 115.9 108 60.2
CAN.G574.29 Capsicum annuum HOM05D004477 ORTHO05D005615 3.2e-24 115.5 108 60.2
Dinv32044 Davidia involucrata HOM05D004477 ORTHO05D005615 3.2e-24 115.5 108 61.1
Glyma.11G152600 Glycine max HOM05D004477 ORTHO05D005615 3.2e-24 115.5 108 62.0
Lsat_1_v5_gn_5_69441 Lactuca sativa HOM05D004477 ORTHO05D005615 3.2e-24 115.5 108 62.0
Lj3g0011019 Lotus japonicus HOM05D004477 ORTHO05D005615 3.2e-24 115.5 108 62.0
TAR623G1431 Trochodendron aralioides HOM05D004477 ORTHO05D005615 3.2e-24 115.5 108 61.1
Ca_14282_v3 Cicer arietinum L. HOM05D004477 ORTHO05D005615 4.2e-24 115.2 108 62.0
MD05G1030400 Malus domestica HOM05D004477 ORTHO05D005615 5.5e-24 114.8 108 61.1
arahy.Tifrunner.gnm1.ann1.5IKX6D Arachis hypogaea HOM05D004477 ORTHO05D005615 7.2e-24 114.4 108 60.2
arahy.Tifrunner.gnm1.ann1.8LX4B2 Arachis hypogaea HOM05D004477 ORTHO05D005615 7.2e-24 114.4 108 60.2
Cfa019574 Carpinus fangiana HOM05D004477 ORTHO05D005615 7.2e-24 114.4 107 59.8
Haze_09336 Corylus avellana HOM05D004477 ORTHO05D005615 7.2e-24 114.4 107 59.8
MD10G1031800 Malus domestica HOM05D004477 ORTHO05D005615 7.2e-24 114.4 108 61.1
Prupe.2G030400 Prunus persica HOM05D004477 ORTHO05D005615 7.2e-24 114.4 108 61.1
VMungo1080G0371 Vigna mungo HOM05D004477 ORTHO05D005615 7.2e-24 114.4 108 61.1
Eucgr.G03251 Eucalyptus grandis HOM05D004477 ORTHO05D005615 9.4e-24 114.0 108 60.2
Nn7g36505 Nelumbo nucifera HOM05D004477 ORTHO05D005615 1.2e-23 113.6 108 60.2
Sed0015395 Sechium edule HOM05D004477 ORTHO05D005615 1.2e-23 113.6 108 60.2
Haze_07686 Corylus avellana HOM05D004477 ORTHO05D005615 1.6e-23 113.2 107 58.9
Glyma.04G139900 Glycine max HOM05D004477 ORTHO05D005615 1.6e-23 113.2 108 61.1
Lalb_Chr20g0109051 Lupinus albus HOM05D004477 ORTHO05D005615 1.6e-23 113.2 108 60.2
EL10Ac2g02848 Beta vulgaris HOM05D004477 ORTHO05D005615 2.1e-23 112.8 107 60.7
Cfa019303 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.1e-23 112.8 108 58.3
COL.COLO4_25826 Corchorus olitorius HOM05D004477 ORTHO05D005615 2.1e-23 112.8 108 60.2
AUR62026831 Chenopodium quinoa HOM05D004477 ORTHO05D005615 2.7e-23 112.5 107 61.7
AUR62037222 Chenopodium quinoa HOM05D004477 ORTHO05D005615 2.7e-23 112.5 107 61.7
CiPaw.11G047300 Carya illinoinensis HOM05D004477 ORTHO05D005615 3.6e-23 112.1 108 57.4
SalBow7G4685 Salvia bowleyana HOM05D004477 ORTHO05D005615 3.6e-23 112.1 113 60.2
Duzib128G1167 Durio zibethinus HOM05D004477 ORTHO05D005615 4.7e-23 111.7 108 60.2
Sc10g0004300 Simmondsia chinensis HOM05D004477 ORTHO05D005615 4.7e-23 111.7 107 58.9
CARHR047410 Cardamine hirsuta HOM05D004477 ORTHO05D005615 6.1e-23 111.3 108 57.4
Phvul.005G031000 Phaseolus vulgaris HOM05D004477 ORTHO05D005615 6.1e-23 111.3 108 60.2
HPP92_017907 Vanilla planifolia HOM05D004477 ORTHO05D005615 6.1e-23 111.3 108 61.1
Gohir.A06G159200 Gossypium hirsutum HOM05D004477 ORTHO05D005615 8.0e-23 110.9 108 60.2
Gohir.D06G165100 Gossypium hirsutum HOM05D004477 ORTHO05D005615 8.0e-23 110.9 108 60.2
Gohir.D12G108500 Gossypium hirsutum HOM05D004477 ORTHO05D005615 8.0e-23 110.9 108 60.2
Gorai.010G192500 Gossypium raimondii HOM05D004477 ORTHO05D005615 8.0e-23 110.9 108 60.2
Migut.H00453 Erythranthe guttata HOM05D004477 ORTHO05D005615 1.0e-22 110.5 108 61.1
Psat4g000640 Pisum sativum HOM05D004477 ORTHO05D005615 1.0e-22 110.5 108 59.3
Sp2g00900 Schrenkiella parvula HOM05D004477 ORTHO05D005615 1.0e-22 110.5 108 59.3
AL2G11360 Arabidopsis lyrata HOM05D004477 ORTHO05D005615 1.4e-22 110.2 108 58.3
Thhalv10023618m.g Eutrema salsugineum HOM05D004477 ORTHO05D005615 1.4e-22 110.2 108 58.3
PGR031G2712 Punica granatum HOM05D004477 ORTHO05D005615 1.4e-22 110.2 108 57.4
MELO3C005127.2 Cucumis melo HOM05D004477 ORTHO05D005615 1.8e-22 109.8 108 59.3
CsaV3_5G024730 Cucumis sativus L. HOM05D004477 ORTHO05D005615 1.8e-22 109.8 108 59.3
Prupe.8G084800 Prunus persica HOM05D004477 ORTHO05D005615 1.8e-22 109.8 108 58.3
Psat4g015320 Pisum sativum HOM05D004477 ORTHO05D005615 2.3e-22 109.4 108 59.3
ClCG01G007690 Citrullus lanatus HOM05D004477 ORTHO05D005615 3.0e-22 109.0 123 53.7
DCAR_030970 Daucus carota HOM05D004477 ORTHO05D005615 3.0e-22 109.0 108 57.4
Medtr3g019370 Medicago truncatula HOM05D004477 ORTHO05D005615 4.0e-22 108.6 108 60.2
Psat5g217400 Pisum sativum HOM05D004477 ORTHO05D005615 4.0e-22 108.6 107 58.9
Hund13333 Selenicereus undatus HOM05D004477 ORTHO05D005615 4.0e-22 108.6 107 57.0
Aqoxy7G00557 Aquilegia oxysepala HOM05D004477 ORTHO05D005615 5.2e-22 108.2 108 58.3
BcaB07g31410 Brassica carinata HOM05D004477 ORTHO05D005615 5.2e-22 108.2 108 58.3
BcaC04g22503 Brassica carinata HOM05D004477 ORTHO05D005615 5.2e-22 108.2 108 57.4
A09p15310 Brassica napus HOM05D004477 ORTHO05D005615 5.2e-22 108.2 108 57.4
C09p18580 Brassica napus HOM05D004477 ORTHO05D005615 5.2e-22 108.2 108 57.4
BolC9t54754H Brassica oleracea HOM05D004477 ORTHO05D005615 5.2e-22 108.2 108 57.4
BraA09t37176Z Brassica rapa HOM05D004477 ORTHO05D005615 5.2e-22 108.2 108 57.4
Carub.0002s0106 Capsella rubella HOM05D004477 ORTHO05D005615 5.2e-22 108.2 108 57.4
Aa31LG2G960 Aethionema arabicum HOM05D004477 ORTHO05D005615 8.8e-22 107.5 108 57.4
Ah.03g137500 Amaranthus hybridus HOM05D004477 ORTHO05D005615 8.8e-22 107.5 107 58.9
ATR0307G081 Amborella trichopoda HOM05D004477 ORTHO05D005615 2.0e-21 106.3 108 59.3
Pp3c25_4340 Physcomitrium patens HOM05D004477 ORTHO05D005615 2.0e-21 106.3 108 59.3
Pp3c25_4350 Physcomitrium patens HOM05D004477 ORTHO05D005615 2.0e-21 106.3 108 59.3
Pp3c25_4370 Physcomitrium patens HOM05D004477 ORTHO05D005615 2.0e-21 106.3 108 59.3
CANSAT80G2023 Cannabis sativa HOM05D004477 ORTHO05D005615 5.7e-21 104.8 108 55.6
PSO017G0587 Papaver somniferum HOM05D004477 ORTHO05D005615 5.7e-21 104.8 108 56.5
QL04p014055 Quercus lobata HOM05D004477 ORTHO05D005615 5.7e-21 104.8 108 55.6
PSO478G1616 Papaver somniferum HOM05D004477 ORTHO05D005615 2.8e-20 102.4 108 55.6
Mapoly0031s0129 Marchantia polymorpha HOM05D004477 ORTHO05D005615 3.7e-20 102.1 108 56.5
SMO118G0432 Selaginella moellendorffii HOM05D004477 ORTHO05D005615 4.8e-20 101.7 108 54.6
FAN03G1284 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.1e-19 100.5 108 56.5
FAN10G1920 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.1e-19 100.5 108 56.5
FvH4_7g02470 Fragaria vesca HOM05D004477 ORTHO05D005615 1.4e-19 100.1 108 56.5
FAN06G1855 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.4e-19 100.1 108 56.5
RcHm_v2.0_Chr1g0321121 Rosa chinensis HOM05D004477 ORTHO05D005615 1.4e-19 100.1 108 55.6
Sed0014614 Sechium edule HOM05D004477 ORTHO05D005615 1.8e-19 99.8 109 55.0
Prupe.2G030500 Prunus persica HOM05D004477 ORTHO05D005615 3.1e-19 99.0 107 56.1
Prupe.8G084000 Prunus persica HOM05D004477 ORTHO05D005615 7.0e-19 97.8 122 50.0
PRCOL_00000378 Prasinoderma coloniale HOM05D004477 ORTHO05D005615 9.1e-19 97.4 108 55.6
Cre10.g454100 Chlamydomonas reinhardtii HOM05D004477 ORTHO05D005615 1.2e-18 97.1 108 52.8
Prupe.I005600 Prunus persica HOM05D004477 ORTHO05D005615 1.2e-18 97.1 124 49.2
AT1G63780 Arabidopsis thaliana HOM05D004477 ORTHO05D005615 1.6e-18 96.7 108 53.7
BcaB07g31550 Brassica carinata HOM05D004477 ORTHO05D005615 1.6e-18 96.7 108 51.9
CBR_g37218 Chara braunii HOM05D004477 ORTHO05D005615 7.7e-18 94.4 108 51.9
Zm00001eb226560 Zea mays HOM05D004477 ORTHO05D005615 1.0e-17 94.0 108 52.8
ECA233G2007 Erigeron canadensis HOM05D004477 ORTHO05D005615 1.7e-17 93.2 109 50.5
Sopen11g025700 Solanum pennellii HOM05D004477 ORTHO05D005615 2.3e-17 92.8 108 53.7
Rhsim07G0063100 Rhododendron simsii HOM05D004477 ORTHO05D005615 8.6e-17 90.9 108 50.9
Gorai.008G117500 Gossypium raimondii HOM05D004477 ORTHO05D005615 7.2e-16 87.8 94 56.4
Solyc11g065960.3 Solanum lycopersicum HOM05D004477 ORTHO05D005615 1.6e-15 86.7 72 68.1
SGA_v2.0_scaffold15G07263 Striga asiatica HOM05D004477 ORTHO05D005615 8.0e-15 84.3 108 50.0
FvH4_7g04360 Fragaria vesca HOM05D004477 ORTHO05D005615 1.0e-14 84.0 108 50.0
Prupe.4G022800 Prunus persica HOM05D004477 ORTHO05D005615 2.3e-14 82.8 108 50.0
MCO12G196 Micromonas commoda HOM05D004477 ORTHO05D005615 6.8e-14 81.3 110 49.1
FAN10G2896 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.5e-13 80.1 108 47.2
Lj7A582G32 Lonicera japonica HOM05D004477 ORTHO05D005615 1.7e-12 76.6 108 45.4
TPR.G3866 Trifolium pratense HOM05D004477 ORTHO05D005615 1.7e-12 76.6 79 55.7
Peaxi162Scf01810g00112 Petunia axillaris HOM05D004477 ORTHO05D005615 1.8e-11 73.2 108 43.5
TPR.G771 Trifolium pratense HOM05D004477 ORTHO05D005615 4.1e-11 72.0 70 60.0
FAN03G0199 Fragaria x ananassa HOM05D004477 ORTHO05D005615 5.9e-10 68.2 108 41.7
Peaxi162Scf00211g01210 Petunia axillaris HOM05D004477 ORTHO05D005615 2.3e-09 66.2 108 38.9
SalBow5G3206 Salvia bowleyana HOM05D031228 ORTHO05D030301 2.3e-09 66.2 93 48.4


User provided reference genes

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