Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 3.4e-259 897.9 482 100.0
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 2.6e-118 429.9 561 51.0
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 4.1e-111 406.0 572 52.1
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 6.5e-93 345.5 570 45.6
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.9e-84 317.4 522 46.4
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.1e-68 265.0 622 37.3
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.5e-60 238.0 761 31.5
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 5.2e-58 229.6 597 35.7
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 6.8e-58 229.2 562 37.2
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 2.6e-57 227.3 564 38.7
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 6.2e-51 206.1 611 34.5
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.2e-49 201.8 594 36.9
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 2.2e-48 197.6 540 36.3
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 3.2e-47 193.7 365 40.8
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 4.2e-47 193.4 389 41.1
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 1.2e-46 191.8 533 34.3
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 7.3e-44 182.6 441 35.8
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 9.6e-44 182.2 548 34.7
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 9.6e-44 182.2 402 39.3
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.8e-43 180.6 557 35.4
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 4.8e-43 179.9 448 40.2
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 6.2e-43 179.5 560 33.0
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 6.2e-43 179.5 391 42.2
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.1e-42 178.7 414 36.5
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.4e-42 178.3 328 42.7
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 1.8e-42 177.9 405 38.8
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 2.4e-42 177.6 408 38.2
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 5.3e-42 176.4 536 36.0
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 9.0e-42 175.6 568 32.0
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 1.2e-41 175.3 601 34.3
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.5e-41 174.9 618 33.0
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 2.0e-41 174.5 317 44.2
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 2.6e-41 174.1 363 40.5
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 7.6e-41 172.6 408 38.5
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 7.6e-41 172.6 429 38.0
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 9.9e-41 172.2 428 36.2
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 1.7e-40 171.4 408 34.8
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 2.2e-40 171.0 313 44.4
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 3.8e-40 170.2 588 33.7
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.1e-39 168.7 372 38.2
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 2.4e-39 167.5 361 37.7
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 5.4e-39 166.4 436 34.9
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 7.1e-39 166.0 319 42.9
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 7.1e-39 166.0 415 37.6
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 1.6e-38 164.9 318 41.2
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.1e-38 164.5 495 34.1
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.1e-38 164.5 528 36.6
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 3.5e-38 163.7 292 41.4
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 3.5e-38 163.7 566 32.2
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 1.3e-37 161.8 454 35.2
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 1.7e-37 161.4 372 38.2
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 3.9e-37 160.2 396 37.9
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 6.6e-37 159.5 395 35.4
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.1e-36 158.7 621 32.2
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 1.9e-36 157.9 322 40.4
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.5e-36 157.5 364 37.9
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 3.3e-36 157.1 572 33.9
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 3.3e-36 157.1 426 36.6
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 4.3e-36 156.8 479 33.6
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.6e-36 156.4 427 36.5
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 7.3e-36 156.0 289 43.3
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 7.3e-36 156.0 289 43.3
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 7.3e-36 156.0 425 35.3
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 1.3e-35 155.2 299 39.1
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 2.8e-35 154.1 515 34.0
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 3.6e-35 153.7 385 37.7
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 3.6e-35 153.7 612 33.0
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 4.8e-35 153.3 298 39.9
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 6.2e-35 152.9 301 41.2
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 6.2e-35 152.9 702 30.3
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 8.1e-35 152.5 426 35.2
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 8.1e-35 152.5 306 39.5
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.1e-34 152.1 626 32.4
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.4e-34 151.8 282 41.8
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.4e-34 151.8 306 42.2
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.8e-34 151.4 410 35.1
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 3.1e-34 150.6 397 37.3
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 3.1e-34 150.6 397 37.3
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 4.0e-34 150.2 381 35.2
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 6.9e-34 149.4 370 33.5
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.5e-33 148.3 309 36.9
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.5e-33 148.3 400 34.5
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.0e-33 147.9 558 30.6
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.0e-33 147.9 497 33.4
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 3.4e-33 147.1 665 28.1
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.3e-32 145.2 650 30.6
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.7e-32 144.8 567 31.2
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 4.9e-32 143.3 299 41.1
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 8.4e-32 142.5 354 34.5
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.4e-31 141.7 298 40.6
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 1.9e-31 141.4 479 33.6
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 6.0e-30 136.3 505 33.5
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 7.9e-30 136.0 435 34.7
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 3.9e-29 133.7 504 32.9
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.1e-28 132.1 326 38.7
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 4.3e-28 130.2 419 31.0
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.7e-27 127.1 564 30.5
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 4.8e-27 126.7 427 32.8
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 8.1e-27 125.9 562 30.4
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.4e-26 125.2 415 31.6
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 3.1e-26 124.0 472 31.8
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 5.3e-26 123.2 737 26.5
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 2.6e-25 120.9 570 31.9
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 4.5e-25 120.2 415 31.1
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 4.5e-25 120.2 308 34.4
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 3.8e-24 117.1 350 34.9
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 8.4e-24 115.9 414 31.4
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.6e-22 111.7 304 37.2
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 2.1e-22 111.3 299 33.4
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 5.7e-20 103.2 350 32.6
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 9.6e-20 102.4 304 33.2
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 1.6e-19 101.7 577 29.1
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 4.8e-19 100.1 426 30.3
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 6.2e-19 99.8 367 31.6
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 8.2e-19 99.4 587 28.4
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.5e-17 95.1 137 45.3
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 5.8e-17 93.2 298 29.2
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.7e-16 91.7 308 29.2
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 1.9e-15 88.2 191 39.3
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 1.9e-15 88.2 299 30.8
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 9.3e-15 85.9 198 33.3
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 9.3e-15 85.9 164 34.1
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 1.0e-13 82.4 355 28.7
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 2.3e-13 81.3 204 39.2
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 3.0e-13 80.9 373 29.2
unitig_0.g2822 Utricularia gibba HOM05D005642 ORTHO05D006672 8.7e-13 79.3 69 59.4
SGA_v2.0_scaffold169G38591 Striga asiatica HOM05D005642 ORTHO05D006672 1.6e-11 75.1 212 34.0
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 2.2e-11 74.7 147 41.5
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 8.2e-11 72.8 437 27.2
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 1.1e-10 72.4 310 29.4
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 1.3e-08 65.5 246 30.5
Hund09258 Selenicereus undatus HOM05D006756 ORTHO05D001869 3.8e-08 63.9 245 29.4
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 1.9e-07 61.6 160 31.9
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 4.2e-07 60.5 313 26.5
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 4.2e-07 60.5 255 29.0
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 5.5e-07 60.1 241 27.0
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 5.5e-07 60.1 236 25.0
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 5.5e-07 60.1 255 29.0
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 5.5e-07 60.1 332 27.4
Actinidia21975 Actinidia chinensis HOM05D006756 ORTHO05D001869 1.6e-06 58.5 375 26.7
ECA233G5261 Erigeron canadensis HOM05D003044 ORTHO05D001869 1.6e-06 58.5 314 24.2
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 1.6e-06 58.5 401 28.7
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 2.7e-06 57.8 396 23.0
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 3.6e-06 57.4 355 25.1
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 6.1e-06 56.6 254 26.4
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 6.1e-06 56.6 337 22.6


User provided reference genes

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