Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 9.4e-206 719.9 354 100.0
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 7.8e-128 461.1 362 65.2
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.9e-122 442.6 358 64.8
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.9e-110 403.3 354 60.5
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 6.9e-108 394.8 356 57.3
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 9.0e-108 394.4 349 58.2
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.5e-107 393.7 345 58.3
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.6e-107 392.9 349 58.2
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 6.5e-106 388.3 325 59.7
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 6.5e-106 388.3 347 56.2
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.4e-105 387.1 302 63.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 7.1e-105 384.8 316 61.1
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 7.1e-105 384.8 347 57.3
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 2.7e-104 382.9 309 61.2
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 2.7e-104 382.9 320 60.0
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.3e-103 380.6 303 62.4
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 5.1e-103 378.6 302 61.6
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.9e-102 376.7 346 56.4
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.9e-102 376.7 335 58.2
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.3e-102 375.9 332 57.5
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 3.3e-102 375.9 330 58.2
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.8e-101 372.9 314 58.6
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 4.8e-101 372.1 339 55.2
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 6.3e-101 371.7 332 56.9
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 6.3e-101 371.7 305 58.7
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 8.2e-101 371.3 303 60.7
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.4e-100 370.5 332 57.2
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.8e-100 370.2 347 55.0
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.4e-100 369.8 302 60.3
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 3.1e-100 369.4 305 58.7
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.1e-100 369.0 303 58.1
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 5.3e-100 368.6 349 56.2
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 6.9e-100 368.2 346 55.5
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 3.4e-99 365.9 371 51.5
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 5.9e-99 365.2 314 58.0
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 2.9e-98 362.8 356 54.5
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 8.5e-98 361.3 304 58.9
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.1e-97 360.9 276 63.4
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.9e-97 360.1 304 58.6
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.5e-97 359.8 344 54.1
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 2.5e-97 359.8 331 55.6
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.2e-97 359.4 304 58.6
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 3.2e-97 359.4 346 55.2
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.1e-96 356.7 335 54.9
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 4.6e-96 355.5 353 54.1
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 3.9e-95 352.4 343 53.1
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.1e-94 350.9 333 53.2
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 3.3e-94 349.4 326 55.5
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 3.3e-94 349.4 303 57.1
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 5.7e-94 348.6 311 56.3
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 7.4e-94 348.2 301 57.8
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.2e-93 346.7 325 55.4
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.8e-93 345.5 341 54.5
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.1e-92 344.4 302 57.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.4e-92 344.0 315 54.9
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.8e-92 343.6 274 60.6
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.2e-91 340.9 310 55.2
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 1.2e-91 340.9 299 56.2
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 2.0e-91 340.1 267 62.2
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 2.2e-90 336.7 271 60.1
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.9e-89 333.6 268 61.2
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 2.5e-89 333.2 302 55.3
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.0e-87 327.8 302 53.3
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 2.3e-87 326.6 271 59.0
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.3e-85 320.9 302 54.0
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.8e-84 317.0 302 51.7
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.5e-83 313.9 269 58.0
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 2.6e-83 313.2 278 55.4
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 2.6e-83 313.2 348 47.7
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 3.4e-83 312.8 302 51.7
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 7.7e-83 311.6 302 51.3
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.0e-82 311.2 302 51.0
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.7e-82 310.5 340 48.5
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 2.9e-82 309.7 339 46.9
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.8e-82 309.3 339 47.2
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 6.5e-82 308.5 334 48.2
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 6.5e-82 308.5 238 60.9
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 6.5e-82 308.5 269 56.5
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 8.5e-82 308.1 302 51.0
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.1e-81 307.8 302 50.7
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-81 307.8 302 50.0
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 5.5e-81 305.4 328 47.0
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.7e-80 302.4 303 50.8
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 3.9e-79 299.3 305 50.2
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 5.7e-78 295.4 325 46.2
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.7e-78 294.7 207 66.2
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.1e-73 281.2 342 45.6
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.5e-73 280.0 220 59.1
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.6e-72 277.3 304 48.7
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 6.1e-72 275.4 282 49.3
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.2e-71 272.3 355 44.8
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 8.8e-71 271.6 278 49.3
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.7e-70 268.9 303 48.5
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 5.7e-70 268.9 298 49.0
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.8e-69 265.8 206 58.7
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 4.8e-69 265.8 205 60.0
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 5.9e-67 258.8 332 41.6
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 1.0e-66 258.1 298 43.3
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.9e-66 256.5 241 53.9
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 8.5e-66 255.0 311 45.7
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 8.5e-66 255.0 270 51.9
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 2.1e-64 250.4 180 63.9
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 4.7e-64 249.2 296 42.6
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 3.4e-62 243.0 296 42.9
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 5.9e-59 232.3 172 61.0
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.6e-56 223.0 315 41.6
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 8.0e-56 221.9 171 60.2
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.3e-53 212.2 195 54.9
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.5e-49 200.3 166 57.8
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 6.6e-42 175.6 168 54.8
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 6.6e-42 175.6 263 40.7
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.2e-40 171.4 262 41.2
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 8.0e-40 168.7 261 39.8
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.2e-38 164.9 133 64.7
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 2.6e-38 163.7 109 65.1
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 9.2e-36 155.2 142 52.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 4.6e-35 152.9 166 50.0
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 3.9e-34 149.8 231 34.2
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.3e-33 145.6 247 38.5
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 2.6e-30 137.1 145 50.3
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.2e-29 134.0 213 39.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 6.4e-29 132.5 76 72.4
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 5.6e-25 119.4 118 51.7
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 5.6e-25 119.4 118 51.7
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 2.8e-24 117.1 295 29.8
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 2.2e-21 107.5 128 46.9
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 3.2e-20 103.6 86 62.8
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.3e-17 93.6 76 52.6
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.8e-15 87.8 109 51.4
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.1e-12 78.6 85 47.1
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.8e-11 72.4 65 53.8
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.5e-09 68.2 67 53.7
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 8.1e-08 62.4 164 33.5


User provided reference genes

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