Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold268G46231 Striga asiatica HOM05D005507 ORTHO05D399677 7.4e-214 746.9 367 100.0
Lsat_1_v5_gn_8_85360 Lactuca sativa HOM05D005507 ORTHO05D007316 2.6e-17 94.0 192 34.4
Oeu024341.2 Olea europaea HOM05D005507 ORTHO05D007316 7.6e-17 92.4 196 34.7
MSTRG.19080 Avicennia marina HOM05D005507 ORTHO05D007316 1.3e-16 91.7 191 35.1
SGA_v2.0_scaffold75G24953 Striga asiatica HOM05D005507 ORTHO05D007316 1.3e-16 91.7 73 64.4
ECA236G2467 Erigeron canadensis HOM05D005507 ORTHO05D007316 1.7e-16 91.3 200 32.0
Manes.08G080700 Manihot esculenta HOM05D005507 ORTHO05D007316 2.9e-16 90.5 198 33.3
Dinv37165 Davidia involucrata HOM05D005507 ORTHO05D007316 3.8e-16 90.1 192 33.9
SalBow3G2672 Salvia bowleyana HOM05D005507 ORTHO05D007316 4.9e-16 89.7 192 33.9
Migut.J00324 Erythranthe guttata HOM05D005507 ORTHO05D007316 8.4e-16 89.0 192 33.9
HanXRQChr04g0125471 Helianthus annuus HOM05D005507 ORTHO05D007316 8.4e-16 89.0 192 32.3
ClCG04G008130 Citrullus lanatus HOM05D005507 ORTHO05D007316 9.3e-15 85.5 193 32.6
CsaV3_4G025060 Cucumis sativus L. HOM05D005507 ORTHO05D007316 1.2e-14 85.1 192 33.9
PGR004G0811 Punica granatum HOM05D005507 ORTHO05D007316 2.1e-14 84.3 191 31.4
MELO3C003135.2 Cucumis melo HOM05D005507 ORTHO05D007316 4.6e-14 83.2 192 33.3
vmacro20162 Vaccinium macrocarpon HOM05D005507 ORTHO05D007316 4.6e-14 83.2 192 31.8
Aqoxy2G02218 Aquilegia oxysepala HOM05D005507 ORTHO05D007316 6.0e-14 82.8 191 30.9
MD12G1143000 Malus domestica HOM05D005507 ORTHO05D007316 6.0e-14 82.8 191 31.9
Zm00001eb148300 Zea mays HOM05D005507 ORTHO05D007316 6.0e-14 82.8 78 51.3
Hma1.2p1_0936F.1_g238770 Hydrangea macrophylla HOM05D005507 ORTHO05D007316 7.9e-14 82.4 188 31.9
PSO339G2235 Papaver somniferum HOM05D005507 ORTHO05D007316 7.9e-14 82.4 83 48.2
QL07p048577 Quercus lobata HOM05D005507 ORTHO05D007316 1.0e-13 82.0 78 56.4
CDE04G1833 Ceratophyllum demersum HOM05D005507 ORTHO05D007316 1.3e-13 81.6 114 41.2
CANSAT35G1404 Cannabis sativa HOM05D005507 ORTHO05D007316 1.8e-13 81.3 191 30.9
MD04G1129900 Malus domestica HOM05D005507 ORTHO05D007316 2.3e-13 80.9 188 31.4
Nn2g11133 Nelumbo nucifera HOM05D005507 ORTHO05D007316 2.3e-13 80.9 77 51.9
CSS0025531 Camellia sinensis var. sinensis HOM05D005507 ORTHO05D007316 3.0e-13 80.5 192 31.8
CDE07G0172 Ceratophyllum demersum HOM05D005507 ORTHO05D007316 3.0e-13 80.5 114 40.4
FvH4_6g13600 Fragaria vesca HOM05D005507 ORTHO05D007316 3.0e-13 80.5 190 31.1
FAN09G0180 Fragaria x ananassa HOM05D005507 ORTHO05D007316 3.0e-13 80.5 192 30.7
FAN14G4006 Fragaria x ananassa HOM05D005507 ORTHO05D007316 3.0e-13 80.5 190 31.1
PSO151G0160 Papaver somniferum HOM05D005507 ORTHO05D007316 3.0e-13 80.5 83 49.4
Lj3g0017176 Lotus japonicus HOM05D005507 ORTHO05D007316 3.9e-13 80.1 98 43.9
Sabra06G0065800 Salix brachista HOM05D005507 ORTHO05D007316 3.9e-13 80.1 186 33.3
AUR62025794 Chenopodium quinoa HOM05D005507 ORTHO05D007316 5.1e-13 79.7 184 32.1
Cc06_g02560 Coffea canephora HOM05D005507 ORTHO05D007316 5.1e-13 79.7 192 32.3
arahy.Tifrunner.gnm1.ann1.CQ4D9K Arachis hypogaea HOM05D005507 ORTHO05D007316 6.7e-13 79.3 189 31.2
Ca_19991_v3 Cicer arietinum L. HOM05D005507 ORTHO05D007316 6.7e-13 79.3 98 43.9
Potri.006G086200 Populus trichocarpa HOM05D005507 ORTHO05D007316 6.7e-13 79.3 188 33.0
EL10As1g23037 Beta vulgaris HOM05D005507 ORTHO05D007316 8.7e-13 79.0 91 48.4
Lj2A93G83 Lonicera japonica HOM05D005507 ORTHO05D007316 8.7e-13 79.0 191 30.4
Rhsim05G0193600 Rhododendron simsii HOM05D005507 ORTHO05D007316 8.7e-13 79.0 187 32.1
Actinidia11260 Actinidia chinensis HOM05D005507 ORTHO05D007316 1.1e-12 78.6 176 33.5
TAR623G0024 Trochodendron aralioides HOM05D005507 ORTHO05D007316 1.1e-12 78.6 77 49.4
unitig_578.g15691 Utricularia gibba HOM05D005507 ORTHO05D007316 1.5e-12 78.2 70 55.7
MBI14_g36928_MAGBIO Magnolia biondii HOM05D005507 ORTHO05D007316 1.9e-12 77.8 77 49.4
Sed0014596 Sechium edule HOM05D005507 ORTHO05D007316 1.9e-12 77.8 187 32.1
Cfa017367 Carpinus fangiana HOM05D005507 ORTHO05D007316 2.5e-12 77.4 191 30.9
AUR62038110 Chenopodium quinoa HOM05D005507 ORTHO05D007316 2.5e-12 77.4 184 31.5
RcHm_v2.0_Chr3g0466451 Rosa chinensis HOM05D005507 ORTHO05D007316 2.5e-12 77.4 96 43.8
CiPaw.09G193400 Carya illinoinensis HOM05D005507 ORTHO05D007316 3.3e-12 77.0 96 44.8
FAN02G3281 Fragaria x ananassa HOM05D005507 ORTHO05D007316 3.3e-12 77.0 78 48.7
TAR633G0577 Trochodendron aralioides HOM05D005507 ORTHO05D007316 3.3e-12 77.0 77 48.1
Atru.chr8.1984 Acer truncatum HOM05D005507 ORTHO05D007316 4.3e-12 76.6 173 28.9
Os01g0841800 Oryza sativa ssp. japonica HOM05D005507 ORTHO05D007316 4.3e-12 76.6 77 48.1
Eucgr.A01270 Eucalyptus grandis HOM05D005507 ORTHO05D007316 5.6e-12 76.3 78 48.7
HPP92_018140 Vanilla planifolia HOM05D005507 ORTHO05D007316 5.6e-12 76.3 77 48.1
GSVIVG01034161001 Vitis vinifera HOM05D005507 ORTHO05D007316 5.6e-12 76.3 94 43.6
arahy.Tifrunner.gnm1.ann1.128L9Z Arachis hypogaea HOM05D005507 ORTHO05D007316 7.4e-12 75.9 189 30.7
CAN.G499.3 Capsicum annuum HOM05D005507 ORTHO05D007316 7.4e-12 75.9 73 53.4
DCAR_028747 Daucus carota HOM05D005507 ORTHO05D007316 7.4e-12 75.9 77 50.6
Lalb_Chr12g0209571 Lupinus albus HOM05D005507 ORTHO05D007316 7.4e-12 75.9 182 30.8
Medtr4g021750 Medicago truncatula HOM05D005507 ORTHO05D007316 7.4e-12 75.9 98 39.8
Solyc09g010870.4 Solanum lycopersicum HOM05D005507 ORTHO05D007316 7.4e-12 75.9 73 53.4
PGSC0003DMG400008832 Solanum tuberosum HOM05D005507 ORTHO05D007316 7.4e-12 75.9 73 53.4
VMungo0331G0190 Vigna mungo HOM05D005507 ORTHO05D007316 9.6e-12 75.5 189 29.1
ATR0559G008 Amborella trichopoda HOM05D005507 ORTHO05D007316 1.3e-11 75.1 77 46.8
Cpa.g.sc188.6 Carica papaya HOM05D005507 ORTHO05D007316 1.6e-11 74.7 73 50.7
TWI53G1275 Tripterygium wilfordii HOM05D005507 ORTHO05D007316 1.6e-11 74.7 78 51.3
A10p33370 Brassica napus HOM05D005507 ORTHO05D007316 2.1e-11 74.3 73 53.4
BraA10t45368Z Brassica rapa HOM05D005507 ORTHO05D007316 2.1e-11 74.3 73 53.4
Haze_20804 Corylus avellana HOM05D005507 ORTHO05D007316 2.1e-11 74.3 76 48.7
Glyma.18G153300 Glycine max HOM05D005507 ORTHO05D007316 2.1e-11 74.3 73 47.9
TPR.G5632 Trifolium pratense HOM05D005507 ORTHO05D007316 2.1e-11 74.3 80 45.0
Sopen09g005610 Solanum pennellii HOM05D005507 ORTHO05D007316 2.8e-11 73.9 73 52.1
Thecc.05G038400 Theobroma cacao HOM05D005507 ORTHO05D007316 3.7e-11 73.6 78 48.7
C09p74280 Brassica napus HOM05D005507 ORTHO05D007316 4.8e-11 73.2 73 52.1
BolC9t60161H Brassica oleracea HOM05D005507 ORTHO05D007316 4.8e-11 73.2 73 52.1
Thhalv10012718m.g Eutrema salsugineum HOM05D005507 ORTHO05D007316 8.1e-11 72.4 73 52.1
Gohir.D09G151000 Gossypium hirsutum HOM05D005507 ORTHO05D007316 8.1e-11 72.4 73 50.7
Gorai.006G172300 Gossypium raimondii HOM05D005507 ORTHO05D007316 8.1e-11 72.4 73 50.7
Sp6g40200 Schrenkiella parvula HOM05D005507 ORTHO05D007316 1.1e-10 72.0 73 50.7
Phvul.010G010050 Phaseolus vulgaris HOM05D005507 ORTHO05D007316 1.4e-10 71.6 78 44.9
Ah.08g210340 Amaranthus hybridus HOM05D005507 ORTHO05D007316 1.8e-10 71.2 70 50.0
Ciclev10011102m.g Citrus clementina HOM05D005507 ORTHO05D007316 1.8e-10 71.2 75 45.3
Gohir.A09G155500 Gossypium hirsutum HOM05D005507 ORTHO05D007316 1.8e-10 71.2 73 49.3
THA.LOC104816267 Tarenaya hassleriana HOM05D005507 ORTHO05D007316 5.3e-10 69.7 113 38.9
Hund10642 Selenicereus undatus HOM05D005507 ORTHO05D007316 6.9e-10 69.3 69 52.2
AL6G11510 Arabidopsis lyrata HOM05D005507 ORTHO05D007316 1.2e-09 68.6 73 52.1
Aa31LG1G22500 Aethionema arabicum HOM05D005507 ORTHO05D007316 2.0e-09 67.8 73 45.2
AagrBONN_evm.TU.Sc2ySwM_362.2750 Anthoceros agrestis HOM05D005507 ORTHO05D007316 2.0e-09 67.8 92 40.2
Lj3C966G5 Lonicera japonica HOM05D005507 ORTHO05D007316 2.6e-09 67.4 140 35.7
Pp3c14_20610 Physcomitrium patens HOM05D005507 ORTHO05D007316 2.6e-09 67.4 92 39.1
Mapoly0006s0179 Marchantia polymorpha HOM05D005507 ORTHO05D007316 5.8e-09 66.2 107 32.7
CARHR211120 Cardamine hirsuta HOM05D005507 ORTHO05D007316 7.6e-09 65.9 73 49.3
Carub.0006s0109 Capsella rubella HOM05D005507 ORTHO05D007316 1.3e-08 65.1 73 49.3
AT5G02250 Arabidopsis thaliana HOM05D005507 ORTHO05D007316 2.9e-08 63.9 73 47.9
SGA_v2.0_scaffold33G13390 Striga asiatica HOM05D046054 ORTHO05D400204 1.2e-06 58.5 43 67.4
SGA_v2.0_scaffold41G15724 Striga asiatica HOM05D046054 ORTHO05D007609 2.1e-06 57.8 83 49.4


User provided reference genes

Program Settings