Gene: AT5G02250

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G02250
  • Transcript Identifier AT5G02250.1
  • Gene Type Coding gene
  • Location Chr5 : 454902-459063 : positive

Gene Family Information

  • ID HOM05D005507
  • #Genes/#Species 139/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G02250.1
  • symbol EMB2730
  • Alias ATMTRNASEII,ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II,RNR1,ribonucleotide reductase 1
  • full_name EMBRYO DEFECTIVE 2730
  • uniprot Q6NQJ6

Descriptions

  • Description Ribonuclease II/R family protein
  • Computational description EMBRYO DEFECTIVE 2730 (EMB2730); FUNCTIONS IN: ribonuclease activity, 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: chloroplast organization, rRNA processing, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: ribonuclease II family protein (TAIR:AT2G17510.1); Has 7586 Blast hits to 7556 proteins in 2301 species: Archae - 41; Bacteria - 5322; Metazoa - 356; Fungi - 403; Plants - 125; Viruses - 2; Other Eukaryotes - 1337 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IMP
Gene OntologyrRNA processing1
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0009658
IMP
Gene Ontologychloroplast organization1
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004540
IEA
GOA Databaseribonuclease activity
GO:0004540
IEA
InterProribonuclease activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008859
IEA
Gene Ontologyexoribonuclease II activity
GO:0000175
IDA
IBA
Gene Ontology3'-5'-exoribonuclease activity2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA
Gene Ontologymitochondrion2
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast4 5
GO:0000178
IBA
Gene Ontologyexosome (RNase complex)3
GO:0005886
HDA
Gene Ontologyplasma membrane6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001900 Ribonuclease II/R
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
16.11.1.2 RNA processing.organelle machinery.ribonuclease activities.exoribonuclease (RNase R)