Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.2e-135 486.5 250 100.0
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 4.6e-106 388.3 274 78.1
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.3e-105 386.0 241 84.2
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 5.0e-105 384.8 251 82.5
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 6.6e-105 384.4 251 82.1
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 8.6e-105 384.0 224 89.7
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 1.1e-104 383.6 249 81.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 2.5e-104 382.5 249 81.5
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 4.3e-104 381.7 271 79.0
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 2.1e-103 379.4 268 78.0
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 2.1e-103 379.4 248 80.2
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 4.7e-103 378.3 266 77.8
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.2e-101 373.6 250 78.4
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 2.6e-101 372.5 223 87.9
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 2.6e-101 372.5 252 79.4
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 3.4e-101 372.1 278 74.8
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 4.4e-101 371.7 265 76.6
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 5.8e-101 371.3 248 80.2
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 9.8e-101 370.5 242 81.0
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 9.8e-101 370.5 249 79.9
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 1.3e-100 370.2 252 80.2
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.3e-100 370.2 249 79.1
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.7e-100 369.8 249 79.9
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.7e-100 369.8 251 77.7
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.7e-100 369.8 251 78.5
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.2e-100 369.4 242 81.0
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 2.9e-100 369.0 237 80.6
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 3.7e-100 368.6 250 78.8
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 4.9e-100 368.2 243 79.8
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 4.9e-100 368.2 244 79.9
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 4.9e-100 368.2 252 79.8
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 6.4e-100 367.9 262 78.2
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 8.3e-100 367.5 251 78.1
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.9e-99 366.3 243 78.6
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 3.2e-99 365.5 243 79.4
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.2e-99 365.5 249 78.3
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.2e-99 365.5 250 78.0
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.2e-99 365.5 249 78.3
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.2e-99 365.5 249 78.3
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 4.1e-99 365.2 253 78.3
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 4.1e-99 365.2 252 77.8
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 5.4e-99 364.8 267 73.8
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 7.1e-99 364.4 218 85.3
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 7.1e-99 364.4 252 79.0
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.6e-98 363.2 253 78.3
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 1.6e-98 363.2 223 85.7
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.1e-98 362.8 250 78.0
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 2.1e-98 362.8 225 84.9
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.7e-98 362.5 245 78.0
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 3.5e-98 362.1 249 78.3
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.5e-98 362.1 250 77.2
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 4.6e-98 361.7 253 78.3
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 4.6e-98 361.7 242 79.8
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 4.6e-98 361.7 222 85.6
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 6.0e-98 361.3 246 80.1
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 6.0e-98 361.3 250 76.0
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 6.0e-98 361.3 248 77.0
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 6.0e-98 361.3 244 78.3
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 6.0e-98 361.3 250 77.2
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 6.0e-98 361.3 244 79.5
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.0e-97 360.5 252 76.2
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.0e-97 360.5 252 76.2
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 1.0e-97 360.5 277 72.6
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-97 360.1 250 76.8
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.3e-97 360.1 247 79.8
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 1.7e-97 359.8 245 78.0
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 3.0e-97 359.0 217 86.6
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 3.9e-97 358.6 221 83.3
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 5.1e-97 358.2 248 77.0
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.1e-97 358.2 251 77.3
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 5.1e-97 358.2 221 83.3
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 5.1e-97 358.2 220 84.1
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.6e-97 357.8 251 76.9
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.1e-96 357.1 251 76.9
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.1e-96 357.1 248 77.0
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 2.5e-96 355.9 268 74.3
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 4.3e-96 355.1 223 83.0
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 4.3e-96 355.1 223 83.0
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 4.3e-96 355.1 271 74.2
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 4.3e-96 355.1 271 74.2
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 4.3e-96 355.1 271 74.2
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 4.3e-96 355.1 271 74.2
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 4.3e-96 355.1 271 74.2
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 4.3e-96 355.1 218 84.9
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 5.6e-96 354.8 218 84.9
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 5.6e-96 354.8 203 89.7
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 5.6e-96 354.8 227 80.2
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 7.3e-96 354.4 218 85.3
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 7.3e-96 354.4 270 73.0
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 7.3e-96 354.4 216 85.2
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 9.5e-96 354.0 251 76.1
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 9.5e-96 354.0 251 76.5
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.2e-95 353.6 218 84.9
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.1e-95 352.8 252 75.0
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 2.8e-95 352.4 218 84.9
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 3.6e-95 352.1 195 91.8
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 4.7e-95 351.7 218 84.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 4.7e-95 351.7 218 84.4
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 4.7e-95 351.7 218 84.4
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 4.7e-95 351.7 218 84.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 4.7e-95 351.7 218 84.4
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 4.7e-95 351.7 250 76.8
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.1e-94 350.5 251 76.5
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 5.2e-94 348.2 218 83.9
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 5.2e-94 348.2 241 76.8
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 6.8e-94 347.8 218 83.9
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 6.8e-94 347.8 214 85.5
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 4.4e-93 345.1 199 88.4
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 4.4e-93 345.1 225 83.1
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 4.4e-93 345.1 244 77.5
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 3.8e-92 342.0 249 75.1
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 6.4e-92 341.3 258 72.5
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.4e-91 340.1 236 77.1
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 3.2e-91 339.0 251 75.3
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 3.2e-91 339.0 253 75.9
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 7.1e-91 337.8 219 79.0
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 2.7e-90 335.9 194 86.6
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 2.2e-84 316.2 232 72.0
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 2.2e-84 316.2 198 80.3
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 4.6e-82 308.5 218 73.4
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 2.1e-79 299.7 216 71.8
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.5e-74 282.3 207 74.4
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.3e-73 280.4 170 84.7
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 9.6e-64 247.7 160 74.4
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 4.0e-62 242.3 163 79.1
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 6.5e-60 235.0 134 91.0
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 7.9e-58 228.0 164 70.7
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 7.9e-58 228.0 171 75.4
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 4.3e-56 222.2 158 79.1
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 4.1e-54 215.7 175 69.7
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 3.4e-45 186.0 160 63.8
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.3e-39 167.5 124 72.6
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.2e-36 156.8 250 43.2
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.9e-36 156.4 250 43.2
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 5.0e-36 155.6 143 68.5
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 5.0e-36 155.6 96 82.3
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 7.9e-34 148.3 168 57.1
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.8e-20 102.8 80 75.0
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 2.9e-12 76.6 64 65.6
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.9e-11 73.9 173 31.2
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 1.4e-09 67.8 173 29.5
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.5e-08 64.3 38 81.6
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 7.5e-08 62.0 38 81.6
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.2e-07 60.5 65 52.3


User provided reference genes

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