Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 6.5e-76 287.3 148 100.0
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 1.0e-60 236.9 157 82.2
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 3.6e-26 122.1 164 48.8
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 2.0e-24 116.3 162 46.3
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 4.4e-24 115.2 135 52.6
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.7e-21 105.9 140 46.4
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 3.0e-20 102.4 159 45.3
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 9.5e-19 97.4 134 47.8
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 2.8e-18 95.9 145 44.1
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 2.8e-18 95.9 165 40.6
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 2.8e-18 95.9 165 40.6
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 4.7e-18 95.1 159 40.9
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 6.2e-18 94.7 147 40.8
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.1e-17 94.0 159 40.9
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 2.3e-17 92.8 150 42.0
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.3e-17 92.8 159 40.3
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 3.1e-17 92.4 159 40.3
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 4.0e-17 92.0 156 37.8
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 5.2e-17 91.7 149 41.6
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 6.8e-17 91.3 129 42.6
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.5e-16 90.1 152 43.4
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 2.0e-16 89.7 159 39.6
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 4.4e-16 88.6 159 39.0
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 5.8e-16 88.2 145 40.7
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 1.3e-15 87.0 169 37.9
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 2.9e-15 85.9 147 43.5
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 3.7e-15 85.5 144 41.0
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 3.7e-15 85.5 148 37.8
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 6.4e-15 84.7 117 43.6
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 1.1e-14 84.0 148 37.8
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 1.1e-14 84.0 163 38.0
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 1.4e-14 83.6 160 38.1
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 1.4e-14 83.6 112 44.6
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 1.4e-14 83.6 97 46.4
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 2.4e-14 82.8 123 40.7
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 3.2e-14 82.4 154 37.7
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 3.2e-14 82.4 153 37.9
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 4.1e-14 82.0 148 37.2
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 1.2e-13 80.5 157 37.6
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 1.6e-13 80.1 151 37.7
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 2.1e-13 79.7 148 35.8
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 2.7e-13 79.3 110 40.9
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 3.5e-13 79.0 152 35.5
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 3.5e-13 79.0 118 39.0
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 3.5e-13 79.0 140 38.6
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 7.8e-13 77.8 143 37.1
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 1.0e-12 77.4 192 32.8
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 3.0e-12 75.9 157 37.6
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 3.9e-12 75.5 170 31.8
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 5.1e-12 75.1 150 36.7
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 5.1e-12 75.1 137 37.2
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 5.1e-12 75.1 171 32.7
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 1.1e-11 73.9 156 35.3
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 1.5e-11 73.6 159 35.2
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 2.5e-11 72.8 144 33.3
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 3.3e-11 72.4 150 34.7
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 3.3e-11 72.4 140 38.6
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 5.6e-11 71.6 157 33.1
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 5.6e-11 71.6 141 34.0
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 7.3e-11 71.2 166 35.5
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 1.6e-10 70.1 152 32.9
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 2.8e-10 69.3 163 35.6
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 2.8e-10 69.3 159 35.8
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 3.6e-10 68.9 96 42.7
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 1.4e-09 67.0 155 36.1
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 2.4e-09 66.2 149 33.6
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 3.1e-09 65.9 138 33.3
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 6.8e-09 64.7 117 38.5
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 6.8e-09 64.7 150 32.7
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 8.9e-09 64.3 111 36.9
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 2.0e-08 63.2 159 32.1
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 2.0e-08 63.2 158 33.5
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 2.6e-08 62.8 161 35.4
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 3.4e-08 62.4 111 36.0
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 3.4e-08 62.4 154 35.7
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 4.4e-08 62.0 155 33.5
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 4.4e-08 62.0 110 34.5
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 7.6e-08 61.2 80 46.2
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 9.9e-08 60.8 155 32.9
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 1.3e-07 60.5 151 33.1
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 1.3e-07 60.5 155 31.6
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 1.1e-06 57.4 152 32.2
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.4e-06 57.0 117 33.3
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 2.4e-06 56.2 150 34.7
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 3.2e-06 55.8 154 31.8
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 3.2e-06 55.8 154 31.8
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 3.2e-06 55.8 154 31.8
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.2e-06 55.8 117 32.5
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 4.2e-06 55.5 156 32.7
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 4.2e-06 55.5 146 32.9
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 7.1e-06 54.7 178 29.2
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 9.2e-06 54.3 135 31.1


User provided reference genes

Program Settings