Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 0.0e+00 1245.0 619 100.0
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 5.2e-135 485.7 275 88.7
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 5.2e-135 485.7 273 89.4
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.8e-132 477.2 322 76.7
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 1.8e-132 477.2 322 76.7
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 7.0e-132 475.3 327 76.8
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 1.5e-126 457.6 249 90.8
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 9.8e-126 454.9 259 85.7
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 9.8e-126 454.9 259 85.7
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 9.8e-126 454.9 259 85.7
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 9.8e-126 454.9 259 85.7
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 9.8e-126 454.9 259 85.7
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 6.4e-125 452.2 260 85.8
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 8.3e-117 425.2 228 91.2
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.9e-116 424.1 240 87.5
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 2.1e-115 420.6 228 91.7
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 2.1e-115 420.6 228 91.7
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 7.8e-115 418.7 228 91.2
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 7.8e-115 418.7 228 91.2
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 7.8e-115 418.7 228 91.2
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 7.8e-115 418.7 228 91.2
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 1.3e-114 417.9 228 91.2
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 2.3e-114 417.2 228 91.2
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 8.6e-114 415.2 225 91.1
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 2.5e-113 413.7 228 89.5
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 1.6e-112 411.0 228 88.2
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 3.6e-112 409.8 233 84.1
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-112 408.7 221 92.8
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-112 408.7 221 92.8
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-112 408.7 221 92.8
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-112 408.7 221 92.8
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-112 408.7 221 92.8
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-112 408.7 221 92.8
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-112 408.7 221 92.8
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-112 408.7 221 92.8
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-112 408.7 221 92.8
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.1e-111 408.3 228 89.9
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 1.1e-111 408.3 231 87.0
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.4e-111 407.9 228 88.6
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 2.4e-111 407.1 216 91.7
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 4.0e-111 406.4 219 92.7
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 4.0e-111 406.4 228 88.2
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 6.8e-111 405.6 228 89.0
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-110 404.4 221 92.3
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 3.4e-110 403.3 221 91.4
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 2.2e-109 400.6 251 81.3
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 1.1e-105 388.3 266 71.8
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 3.6e-104 383.3 223 82.1
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 9.9e-102 375.2 222 83.3
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 8.4e-101 372.1 203 88.7
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 1.3e-98 364.8 225 85.3
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 8.7e-98 362.1 231 81.0
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 8.1e-96 355.5 200 87.5
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.3e-93 348.2 270 68.9
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 1.6e-91 341.3 192 91.1
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 1.0e-90 338.6 199 87.4
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 3.7e-88 330.1 171 94.2
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 2.0e-86 324.3 234 75.2
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 4.5e-86 323.2 189 88.4
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 2.7e-83 313.9 170 92.9
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 7.6e-78 295.8 171 88.3
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 3.7e-72 276.9 147 91.2
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.0e-70 271.2 191 75.9
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.0e-70 271.2 191 75.9
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 8.5e-69 265.8 150 88.7
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.9e-68 264.6 142 92.3
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 2.4e-63 247.7 153 83.7
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 1.1e-57 228.8 131 86.3
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 3.3e-57 227.3 122 90.2
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 2.8e-56 224.2 130 86.9
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 4.8e-56 223.4 122 88.5
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.8e-55 221.5 122 87.7
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.8e-55 221.5 122 87.7
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.8e-55 221.5 122 87.7
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.8e-55 221.5 122 87.7
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.8e-55 221.5 122 87.7
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 3.4e-54 217.2 122 88.5
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 7.7e-54 216.1 122 86.9
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 1.0e-53 215.7 122 87.7
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 4.7e-51 206.8 122 84.4
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 2.2e-48 198.0 118 85.6
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.8e-47 194.9 105 89.5
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 3.1e-47 194.1 105 89.5
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 4.5e-46 190.3 115 81.7
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 1.7e-45 188.3 119 79.8
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 4.2e-44 183.7 127 66.1
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 8.8e-42 176.0 105 83.8
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 3.3e-41 174.1 108 82.4
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.7e-38 164.5 99 80.8
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.7e-38 164.5 99 80.8
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.7e-38 164.5 99 80.8
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 2.7e-38 164.5 106 83.0
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.3e-37 162.2 88 86.4
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 1.3e-37 162.2 87 89.7
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-37 160.2 96 86.5
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-37 160.2 96 86.5
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 4.2e-36 157.1 100 77.0
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 2.1e-35 154.8 78 93.6
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.1e-35 154.8 87 85.1
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 2.7e-35 154.5 79 92.4
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 2.7e-35 154.5 105 68.6
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 6.1e-35 153.3 84 88.1
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 6.1e-35 153.3 84 88.1
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 6.1e-35 153.3 155 54.8
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 3.7e-32 144.1 103 69.9
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 5.9e-30 136.7 75 89.3
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 2.9e-29 134.4 84 84.5
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 8.6e-29 132.9 72 87.5
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 2.5e-28 131.3 72 94.4
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 9.5e-28 129.4 125 46.4
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.6e-27 128.6 105 65.7
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 2.8e-27 127.9 83 77.1
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 3.6e-27 127.5 93 63.4
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.0e-27 126.3 69 85.5
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 1.4e-26 125.6 82 79.3
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 1.8e-26 125.2 61 96.7
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 5.2e-26 123.6 78 76.9
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 2.0e-25 121.7 70 81.4
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 2.6e-25 121.3 203 38.4
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 9.8e-25 119.4 70 77.1
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 2.2e-24 118.2 122 54.1
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 6.3e-24 116.7 60 88.3
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 8.3e-24 116.3 90 64.4
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 2.4e-23 114.8 113 53.1
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.0e-22 111.7 121 53.7
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 3.5e-22 110.9 59 94.9
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 4.5e-22 110.5 56 85.7
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 2.3e-21 108.2 73 63.0
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 1.5e-20 105.5 60 78.3
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 2.3e-18 98.2 71 69.0
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-17 95.9 57 80.7
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.6e-17 94.7 59 83.1
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 2.9e-16 91.3 54 83.3
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.4e-16 90.1 52 88.5
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 5.4e-15 87.0 45 84.4
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 2.7e-14 84.7 74 62.2
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 3.5e-14 84.3 41 90.2
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.6e-14 84.0 122 45.1
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 6.0e-14 83.6 42 85.7
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 1.3e-13 82.4 86 57.0
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 3.9e-13 80.9 110 46.4
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 6.6e-13 80.1 40 85.0
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 6.6e-13 80.1 40 85.0
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 8.6e-13 79.7 44 81.8
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.9e-12 78.6 55 69.1
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 3.3e-12 77.8 48 85.4
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 5.6e-12 77.0 42 83.3
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 2.1e-11 75.1 41 85.4
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 3.6e-11 74.3 47 74.5
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.7e-11 73.9 61 63.9
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 3.4e-09 67.8 52 73.1
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 7.0e-07 60.1 71 50.7
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 1.2e-06 59.3 49 59.2
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 2.1e-06 58.5 49 57.1
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 6.0e-06 57.0 36 77.8
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 6.0e-06 57.0 40 70.0
Sc08g0004800 Simmondsia chinensis HOM05D004291 ORTHO05D005620 6.0e-06 57.0 47 61.7


User provided reference genes

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