Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 0.0e+00 1343.9 676 100.0
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 3.4e-220 768.8 676 62.1
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 5.4e-218 761.5 677 62.5
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 7.5e-196 688.0 666 55.4
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 5.4e-186 655.2 548 61.9
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 1.4e-178 630.6 495 67.3
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 5.4e-178 628.6 548 59.1
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 5.4e-178 628.6 684 51.5
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 7.1e-178 628.2 684 51.3
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 6.0e-177 625.2 543 59.9
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 3.0e-176 622.9 682 51.8
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 4.3e-175 619.0 685 50.4
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 5.6e-175 618.6 680 52.1
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 5.3e-173 612.1 549 57.9
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 4.4e-172 609.0 594 54.7
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 4.4e-172 609.0 673 50.2
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 3.8e-171 605.9 547 56.1
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 4.9e-171 605.5 551 58.6
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 6.4e-171 605.1 546 57.1
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 2.4e-170 603.2 548 55.5
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 4.2e-170 602.4 519 57.6
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 1.2e-169 600.9 550 57.6
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 2.3e-168 596.7 549 56.5
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 4.3e-167 592.4 553 55.7
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 1.6e-166 590.5 710 48.7
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 2.8e-166 589.7 584 53.6
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 2.8e-166 589.7 615 53.2
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 9.0e-165 584.7 550 55.6
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 1.2e-164 584.3 546 55.5
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 1.9e-162 577.0 543 56.2
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 2.4e-162 576.6 553 54.6
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 9.3e-162 574.7 552 54.2
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.6e-161 573.9 524 55.9
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.5e-161 572.8 549 54.6
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 4.6e-161 572.4 550 55.8
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 7.9e-161 571.6 552 54.7
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 7.9e-161 571.6 569 54.5
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 2.3e-160 570.1 550 55.1
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 6.7e-160 568.5 611 51.7
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 1.5e-159 567.4 519 57.0
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.9e-159 567.0 533 55.7
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 3.3e-159 566.2 554 54.5
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 9.6e-159 564.7 576 53.5
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 1.6e-158 563.9 565 53.1
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 4.8e-158 562.4 548 54.2
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 5.3e-157 558.9 554 54.0
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 6.9e-157 558.5 555 54.6
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 2.6e-156 556.6 539 55.1
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 7.6e-156 555.1 545 53.9
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 1.3e-155 554.3 563 52.4
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.9e-155 553.1 524 54.8
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 3.2e-154 549.7 526 54.9
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 7.1e-154 548.5 559 53.3
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 7.9e-153 545.0 544 52.8
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 3.0e-152 543.1 555 52.3
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 3.9e-152 542.7 545 52.5
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 5.1e-152 542.3 545 51.9
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 6.7e-152 542.0 583 50.9
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 7.4e-151 538.5 543 53.6
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 9.6e-151 538.1 551 52.6
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 9.6e-151 538.1 543 52.1
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 2.1e-150 537.0 543 52.5
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 4.8e-150 535.8 521 53.4
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 2.0e-148 530.4 549 53.7
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 3.4e-148 529.6 551 51.5
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 3.4e-148 529.6 544 50.7
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 1.0e-147 528.1 543 51.7
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.0e-147 528.1 546 52.0
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 2.2e-147 526.9 551 51.7
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 6.5e-147 525.4 535 51.0
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 8.4e-147 525.0 559 50.4
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 7.9e-145 518.5 544 50.7
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 1.0e-144 518.1 582 48.8
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 1.9e-143 513.8 449 59.2
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 1.6e-142 510.8 550 50.7
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 3.1e-141 506.5 548 49.8
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 6.9e-141 505.4 545 50.3
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 3.4e-140 503.1 551 49.5
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 6.5e-139 498.8 524 50.6
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 1.1e-138 498.0 508 51.4
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 1.1e-138 498.0 613 46.0
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 5.5e-138 495.7 517 50.5
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 4.6e-137 492.7 550 47.3
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 6.7e-136 488.8 516 50.4
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 1.5e-135 487.6 558 49.6
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 9.7e-135 485.0 513 50.3
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 1.7e-134 484.2 510 50.4
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 4.8e-134 482.6 531 49.9
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 1.1e-133 481.5 546 48.7
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 1.8e-133 480.7 497 51.7
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.4e-133 480.3 439 56.7
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 3.4e-132 476.5 676 42.3
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 1.1e-130 471.5 546 47.6
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 5.5e-130 469.2 538 48.1
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.1e-122 444.9 569 44.3
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 1.8e-117 427.6 480 48.1
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 2.9e-115 420.2 403 53.6
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 4.7e-89 333.2 516 38.8
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 1.5e-87 328.2 548 39.4
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 4.4e-87 326.6 458 43.0
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 6.8e-80 302.8 469 39.2
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 1.4e-77 295.0 523 35.0
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 1.3e-59 235.3 263 51.3
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.8e-56 224.9 317 39.4
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 1.3e-51 208.8 192 58.9
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.0e-51 207.6 214 50.0
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 2.2e-38 164.9 526 26.8
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 7.6e-31 139.8 401 27.2
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.1e-29 136.0 659 24.1
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 1.8e-24 118.6 123 56.1
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 3.8e-22 110.9 361 28.5
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 1.1e-13 82.8 67 61.2
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 9.4e-13 79.7 112 42.0
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.6e-12 79.0 83 47.0
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.6e-12 79.0 83 47.0
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.6e-12 77.8 83 47.0
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.6e-12 77.8 83 47.0
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 1.7e-09 68.9 336 25.6
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 3.7e-09 67.8 207 30.4
AagrBONN_evm.TU.Sc2ySwM_228.4379 Anthoceros agrestis HOM05D004977 ORTHO05D006454 8.2e-09 66.6 276 21.4
Pp3c22_21030 Physcomitrium patens HOM05D004977 ORTHO05D006454 1.1e-08 66.2 284 21.8
Nitab4.5_0003551g0050 Nicotiana tabacum HOM05D004977 ORTHO05D006454 1.4e-08 65.9 336 25.3
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 2.4e-08 65.1 334 24.0
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 2.4e-08 65.1 334 21.9
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 2.4e-08 65.1 334 21.9
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 4.1e-08 64.3 336 21.7
Os11g0572100 Oryza sativa ssp. japonica HOM05D004977 ORTHO05D006454 9.1e-08 63.2 271 22.5
Ca_16563_v3 Cicer arietinum L. HOM05D001470 ORTHO05D006756 1.6e-07 62.4 244 24.2
Lj1g0008455 Lotus japonicus HOM05D001470 ORTHO05D006756 2.0e-07 62.0 244 24.2
Zm00001eb114240 Zea mays HOM05D004977 ORTHO05D006454 2.0e-07 62.0 285 19.6
Lalb_Chr11g0065951 Lupinus albus HOM05D001470 ORTHO05D006756 3.5e-07 61.2 244 24.2
Medtr3g088120 Medicago truncatula HOM05D001470 ORTHO05D006756 4.5e-07 60.8 244 24.2
Migut.D02372 Erythranthe guttata HOM05D004977 ORTHO05D006454 5.9e-07 60.5 284 21.1
Mapoly0030s0061 Marchantia polymorpha HOM05D004977 ORTHO05D006454 1.0e-06 59.7 264 21.6
Duzib093G0261 Durio zibethinus HOM05D001470 ORTHO05D006756 1.7e-06 58.9 244 24.2
Migut.D02375 Erythranthe guttata HOM05D004977 ORTHO05D006454 1.7e-06 58.9 279 21.1
BcaC03g13854 Brassica carinata HOM05D004977 ORTHO05D006454 2.2e-06 58.5 267 21.7
BolC2t07133H Brassica oleracea HOM05D004977 ORTHO05D006454 2.2e-06 58.5 267 21.7
arahy.Tifrunner.gnm1.ann1.0P0L33 Arachis hypogaea HOM05D001470 ORTHO05D006756 2.9e-06 58.2 244 24.2
THA.LOC104800207 Tarenaya hassleriana HOM05D001470 ORTHO05D006756 2.9e-06 58.2 244 23.4
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 3.8e-06 57.8 69 49.3
Sp6g23180 Schrenkiella parvula HOM05D004977 ORTHO05D006454 3.8e-06 57.8 267 22.8
Sc11g0002670 Simmondsia chinensis HOM05D004977 ORTHO05D006454 3.8e-06 57.8 369 21.4
HanXRQChr16g0525891 Helianthus annuus HOM05D004977 ORTHO05D006454 5.0e-06 57.4 265 21.1
TWI79G0798 Tripterygium wilfordii HOM05D004977 ORTHO05D006454 5.0e-06 57.4 270 20.7
GSVIVG01008841001 Vitis vinifera HOM05D001470 ORTHO05D006756 5.0e-06 57.4 245 23.3
BNapus_Darmor_BZH_scaffold_38p00910 Brassica napus HOM05D004977 ORTHO05D006454 6.5e-06 57.0 267 21.3
CDE05G0645 Ceratophyllum demersum HOM05D004977 ORTHO05D006454 6.5e-06 57.0 276 21.4
Cc01_g07900 Coffea canephora HOM05D004977 ORTHO05D006454 6.5e-06 57.0 279 22.9


User provided reference genes

Program Settings