Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 6.8e-182 640.6 334 100.0
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.7e-140 503.1 348 80.5
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.7e-132 476.5 348 74.4
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 8.8e-121 437.6 347 69.7
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 3.3e-120 435.6 348 68.4
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 1.3e-119 433.7 345 69.9
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 3.7e-119 432.2 340 70.3
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 4.8e-119 431.8 348 67.0
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.4e-118 430.3 348 66.7
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 1.8e-118 429.9 349 66.2
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 4.1e-118 428.7 352 68.2
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 4.1e-118 428.7 431 59.6
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 5.3e-118 428.3 349 65.9
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 6.9e-118 427.9 349 66.8
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.5e-117 426.8 326 73.0
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 1.3e-116 423.7 348 68.4
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 2.2e-116 422.9 351 67.8
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.2e-115 418.7 321 70.1
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 4.2e-115 418.7 354 66.9
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.2e-114 417.2 343 66.8
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.6e-114 416.8 332 66.0
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.6e-114 416.8 316 72.2
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 6.1e-114 414.8 349 65.6
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 7.9e-114 414.5 351 65.8
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 3.9e-113 412.1 344 64.8
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 6.7e-113 411.4 326 68.1
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.5e-112 410.2 345 66.4
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 7.4e-112 407.9 357 64.4
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 9.7e-112 407.5 349 65.0
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.7e-111 406.8 309 69.9
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.7e-111 406.8 332 65.1
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.4e-110 402.9 344 65.1
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.2e-109 400.6 348 64.9
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.3e-108 397.1 337 64.7
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.7e-108 396.7 330 64.8
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 2.2e-108 396.4 348 65.5
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 2.2e-108 396.4 322 66.5
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 3.8e-108 395.6 343 63.6
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.8e-108 395.6 348 63.8
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 5.0e-108 395.2 351 63.5
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 6.5e-108 394.8 346 64.5
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 6.5e-108 394.8 347 63.4
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.5e-107 393.7 327 67.0
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.2e-107 392.5 346 64.2
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 7.2e-107 391.3 331 64.0
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.1e-106 389.8 346 63.9
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.7e-106 389.4 346 63.3
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 6.1e-106 388.3 348 62.9
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.4e-105 387.1 340 61.5
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.4e-105 387.1 334 64.1
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.4e-105 387.1 346 62.7
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 1.8e-105 386.7 329 64.4
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 4.0e-105 385.6 330 62.1
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 5.2e-105 385.2 330 63.3
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.1e-104 384.0 327 64.2
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 3.3e-104 382.5 336 61.6
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 7.5e-104 381.3 338 62.7
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 1.3e-103 380.6 337 62.6
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.7e-103 380.2 339 63.4
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.7e-103 380.2 343 62.4
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.7e-103 380.2 345 62.0
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 2.2e-103 379.8 346 61.3
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 2.8e-103 379.4 331 64.4
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 3.7e-103 379.0 356 60.4
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.7e-103 379.0 343 62.1
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 6.3e-103 378.3 341 61.9
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 8.2e-103 377.9 337 62.3
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.4e-102 377.1 345 61.7
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 4.1e-102 375.6 348 60.6
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 5.3e-102 375.2 337 61.4
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 9.1e-102 374.4 359 60.2
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.6e-101 373.6 312 61.9
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 2.7e-101 372.9 333 60.7
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.7e-101 372.9 339 61.1
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 7.7e-101 371.3 308 62.7
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 7.7e-101 371.3 357 58.8
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.7e-100 370.2 343 60.1
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 2.2e-100 369.8 362 58.0
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 3.8e-100 369.0 335 60.3
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.0e-100 368.6 343 59.8
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.0e-100 368.6 343 59.8
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.5e-99 367.1 335 60.9
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.5e-99 367.1 344 59.9
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.5e-99 366.3 335 61.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 2.5e-99 366.3 338 60.1
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.5e-99 366.3 343 59.5
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 4.2e-99 365.5 349 59.9
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 5.5e-99 365.2 307 63.5
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 5.5e-99 365.2 339 61.7
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 1.6e-98 363.6 345 58.8
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.8e-97 360.1 348 58.9
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 2.3e-97 359.8 345 59.7
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 3.0e-97 359.4 326 62.6
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 4.0e-97 359.0 305 62.3
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 8.8e-97 357.8 340 60.6
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.2e-96 357.5 343 60.3
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.2e-96 357.5 330 60.9
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.2e-96 357.5 338 59.2
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-96 356.7 340 59.7
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 2.0e-96 356.7 340 59.7
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 9.8e-96 354.4 346 57.5
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 3.7e-95 352.4 356 61.0
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 3.7e-95 352.4 330 60.0
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.7e-95 352.4 388 54.6
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 6.3e-95 351.7 330 60.6
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 3.1e-94 349.4 332 58.7
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 5.4e-94 348.6 330 60.3
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 5.4e-94 348.6 331 58.0
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 7.0e-94 348.2 330 59.4
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 7.0e-94 348.2 330 59.4
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 5.9e-93 345.1 330 59.7
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 5.9e-93 345.1 337 57.6
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 7.7e-93 344.7 330 59.7
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 7.7e-93 344.7 340 57.9
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 7.7e-93 344.7 329 57.4
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.7e-92 343.6 330 59.1
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 6.5e-92 341.7 335 58.5
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 5.5e-91 338.6 312 57.1
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.6e-90 337.0 307 57.3
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 2.1e-90 336.7 311 59.5
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.1e-90 335.1 271 64.9
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 8.0e-90 334.7 307 57.3
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-89 333.6 330 58.5
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 1.0e-84 317.8 359 53.8
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.3e-84 316.6 354 55.4
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 1.6e-82 310.5 346 52.0
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 4.9e-79 298.9 335 52.8
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.8e-78 297.0 336 53.0
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 5.4e-78 295.4 239 66.9
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 5.9e-77 292.0 358 50.0
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 5.6e-75 285.4 333 50.5
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 8.0e-74 281.6 350 51.1
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.4e-73 280.8 345 49.3
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-72 276.9 341 51.0
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.4e-70 270.0 311 49.5
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 4.1e-70 269.2 353 49.9
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.6e-69 267.3 167 79.0
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 3.0e-68 263.1 269 53.5
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.1e-65 254.6 291 52.2
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.1e-65 254.6 316 50.6
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 3.1e-65 253.1 231 64.1
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 3.1e-65 253.1 334 48.5
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 3.9e-60 236.1 246 57.3
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-53 214.2 247 54.3
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 7.8e-53 211.8 190 63.2
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 5.1e-52 209.1 198 58.1
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.5e-48 197.6 137 75.9
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 4.9e-47 192.6 186 61.3
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 1.4e-41 174.5 169 55.6
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.7e-39 167.5 319 36.7
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 4.9e-39 166.0 159 62.3
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 8.4e-39 165.2 119 79.8
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.0e-36 158.3 181 54.1
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 5.8e-32 142.5 148 59.5
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 6.2e-26 122.5 386 31.9
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.4e-25 121.3 294 32.3
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.7e-20 102.4 99 53.5
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.6e-18 97.8 99 57.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.7e-15 87.8 89 52.8
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.7e-15 87.8 61 73.8
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 4.3e-11 73.2 73 52.1
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 6.9e-09 65.9 43 67.4
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 2.6e-08 63.9 68 54.4
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.5e-08 63.2 66 51.5
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 5.9e-08 62.8 38 84.2
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 1.3e-07 61.6 96 44.8
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.1e-06 58.5 108 44.4


User provided reference genes

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