Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09462 Striga asiatica HOM05D005173 ORTHO05D006214 2.1e-244 848.6 428 100.0
Migut.L01541 Erythranthe guttata HOM05D005173 ORTHO05D006214 3.3e-149 532.3 362 75.1
Dinv25585 Davidia involucrata HOM05D005173 ORTHO05D006214 7.0e-147 524.6 394 68.5
PGR142G0948 Punica granatum HOM05D005173 ORTHO05D006214 1.2e-146 523.9 362 73.5
PGSC0003DMG400020952 Solanum tuberosum HOM05D005173 ORTHO05D006214 2.9e-145 519.2 363 72.7
Dinv42364 Davidia involucrata HOM05D005173 ORTHO05D006214 5.0e-145 518.5 369 72.4
Atru.chr7.1658 Acer truncatum HOM05D005173 ORTHO05D006214 6.5e-145 518.1 366 71.9
Ciclev10008959m.g Citrus clementina HOM05D005173 ORTHO05D006214 6.5e-145 518.1 362 72.9
Sopen07g020470 Solanum pennellii HOM05D005173 ORTHO05D006214 6.5e-145 518.1 363 72.5
Glyma.13G107800 Glycine max HOM05D005173 ORTHO05D006214 1.5e-144 516.9 366 71.9
Solyc07g041200.3 Solanum lycopersicum HOM05D005173 ORTHO05D006214 1.5e-144 516.9 363 72.2
CiPaw.03G210500 Carya illinoinensis HOM05D005173 ORTHO05D006214 4.2e-144 515.4 366 71.6
MELO3C015504.2 Cucumis melo HOM05D005173 ORTHO05D006214 4.2e-144 515.4 362 72.4
CAN.G88.5 Capsicum annuum HOM05D005173 ORTHO05D006214 5.5e-144 515.0 363 72.7
Glyma.17G051500 Glycine max HOM05D005173 ORTHO05D006214 7.2e-144 514.6 366 71.6
MSTRG.19482 Avicennia marina HOM05D005173 ORTHO05D006214 9.4e-144 514.2 365 71.8
ClCG03G015280 Citrullus lanatus HOM05D005173 ORTHO05D006214 1.2e-143 513.8 362 72.1
Lj4g0027115 Lotus japonicus HOM05D005173 ORTHO05D006214 1.2e-143 513.8 366 71.3
Manes.03G037700 Manihot esculenta HOM05D005173 ORTHO05D006214 1.2e-143 513.8 361 71.2
Cpa.g.sc28.94 Carica papaya HOM05D005173 ORTHO05D006214 2.1e-143 513.1 368 70.7
Hma1.2p1_0797F.1_g219350 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 2.1e-143 513.1 371 71.7
Lalb_Chr07g0181031 Lupinus albus HOM05D005173 ORTHO05D006214 2.1e-143 513.1 366 71.9
CsaV3_1G040770 Cucumis sativus L. HOM05D005173 ORTHO05D006214 2.7e-143 512.7 362 71.8
Oeu054818.3 Olea europaea HOM05D005173 ORTHO05D006214 2.7e-143 512.7 449 62.8
GSVIVG01015121001 Vitis vinifera HOM05D005173 ORTHO05D006214 4.7e-143 511.9 366 71.9
TWI63G0548 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 6.1e-143 511.5 362 69.9
arahy.Tifrunner.gnm1.ann1.6AS4TW Arachis hypogaea HOM05D005173 ORTHO05D006214 8.0e-143 511.1 366 71.6
RcHm_v2.0_Chr2g0094221 Rosa chinensis HOM05D005173 ORTHO05D006214 1.0e-142 510.8 363 71.1
Sed0012764 Sechium edule HOM05D005173 ORTHO05D006214 1.0e-142 510.8 362 71.8
QL02p061251 Quercus lobata HOM05D005173 ORTHO05D006214 1.4e-142 510.4 361 72.6
CSS0048515 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 1.8e-142 510.0 362 71.5
Potri.018G064800 Populus trichocarpa HOM05D005173 ORTHO05D006214 1.8e-142 510.0 362 71.5
Prupe.7G203600 Prunus persica HOM05D005173 ORTHO05D006214 1.8e-142 510.0 362 71.5
Nn8g38732 Nelumbo nucifera HOM05D005173 ORTHO05D006214 2.3e-142 509.6 361 71.7
FAN23G0270 Fragaria x ananassa HOM05D005173 ORTHO05D006214 3.0e-142 509.2 363 70.8
Phvul.003G133200 Phaseolus vulgaris HOM05D005173 ORTHO05D006214 4.0e-142 508.8 357 72.3
Thecc.09G081500 Theobroma cacao HOM05D005173 ORTHO05D006214 5.2e-142 508.4 361 71.5
CANSAT56G2861 Cannabis sativa HOM05D005173 ORTHO05D006214 6.8e-142 508.1 368 70.7
FAN26G2726 Fragaria x ananassa HOM05D005173 ORTHO05D006214 6.8e-142 508.1 370 69.7
arahy.Tifrunner.gnm1.ann1.9Y0BJI Arachis hypogaea HOM05D005173 ORTHO05D006214 1.2e-141 507.3 366 71.0
VMungo1215G2902 Vigna mungo HOM05D005173 ORTHO05D006214 1.5e-141 506.9 365 70.1
FvH4_1g08150 Fragaria vesca HOM05D005173 ORTHO05D006214 2.0e-141 506.5 363 70.5
Actinidia39689 Actinidia chinensis HOM05D005173 ORTHO05D006214 2.6e-141 506.1 363 71.9
Gorai.013G226300 Gossypium raimondii HOM05D005173 ORTHO05D006214 3.4e-141 505.8 355 71.8
Potri.006G145200 Populus trichocarpa HOM05D005173 ORTHO05D006214 3.4e-141 505.8 362 71.3
COL.COLO4_18139 Corchorus olitorius HOM05D005173 ORTHO05D006214 4.4e-141 505.4 381 68.5
MD15G1213300 Malus domestica HOM05D005173 ORTHO05D006214 4.4e-141 505.4 362 70.7
Cc00_g19370 Coffea canephora HOM05D005173 ORTHO05D006214 5.7e-141 505.0 373 69.7
Eucgr.C00843 Eucalyptus grandis HOM05D005173 ORTHO05D006214 5.7e-141 505.0 362 71.5
FAN19G2713 Fragaria x ananassa HOM05D005173 ORTHO05D006214 5.7e-141 505.0 363 70.2
FAN26G1854 Fragaria x ananassa HOM05D005173 ORTHO05D006214 5.7e-141 505.0 363 70.0
Lalb_Chr12g0200011 Lupinus albus HOM05D005173 ORTHO05D006214 2.2e-140 503.1 358 71.2
Duzib150G1290 Durio zibethinus HOM05D005173 ORTHO05D006214 3.7e-140 502.3 366 69.7
FAN28G2824 Fragaria x ananassa HOM05D005173 ORTHO05D006214 4.8e-140 501.9 363 70.0
Ca_21308_v3 Cicer arietinum L. HOM05D005173 ORTHO05D006214 6.3e-140 501.5 366 70.2
Haze_25966 Corylus avellana HOM05D005173 ORTHO05D006214 6.3e-140 501.5 405 65.7
TAR636G1303 Trochodendron aralioides HOM05D005173 ORTHO05D006214 6.3e-140 501.5 363 70.5
TWI32G0591 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 1.1e-139 500.7 362 68.2
MD02G1086100 Malus domestica HOM05D005173 ORTHO05D006214 3.1e-139 499.2 362 69.9
Manes.16G098000 Manihot esculenta HOM05D005173 ORTHO05D006214 5.4e-139 498.4 363 70.8
Aqoxy7G01101 Aquilegia oxysepala HOM05D005173 ORTHO05D006214 9.1e-139 497.7 368 69.0
MSTRG.26457 Avicennia marina HOM05D005173 ORTHO05D006214 1.2e-138 497.3 358 71.2
Sed0013811 Sechium edule HOM05D005173 ORTHO05D006214 1.2e-138 497.3 362 70.7
MSTRG.10526 Avicennia marina HOM05D005173 ORTHO05D006214 4.5e-138 495.4 364 69.8
BcaB08g36505 Brassica carinata HOM05D005173 ORTHO05D006214 5.9e-138 495.0 363 68.6
Gohir.A13G192200 Gossypium hirsutum HOM05D005173 ORTHO05D006214 5.9e-138 495.0 367 68.4
Sc18g0002360 Simmondsia chinensis HOM05D005173 ORTHO05D006214 7.7e-138 494.6 362 68.2
BcaC04g19437 Brassica carinata HOM05D005173 ORTHO05D006214 1.0e-137 494.2 363 68.6
EL10Ac8g19142 Beta vulgaris HOM05D005173 ORTHO05D006214 1.3e-137 493.8 362 68.5
A10p19490 Brassica napus HOM05D005173 ORTHO05D006214 1.7e-137 493.4 364 68.1
Gohir.D13G197600 Gossypium hirsutum HOM05D005173 ORTHO05D006214 1.7e-137 493.4 367 69.5
HanXRQChr01g0007561 Helianthus annuus HOM05D005173 ORTHO05D006214 2.3e-137 493.0 356 71.1
TAR624G0255 Trochodendron aralioides HOM05D005173 ORTHO05D006214 2.3e-137 493.0 365 68.5
C09p55690 Brassica napus HOM05D005173 ORTHO05D006214 2.9e-137 492.7 364 68.1
BraA10t44025Z Brassica rapa HOM05D005173 ORTHO05D006214 2.9e-137 492.7 362 68.5
Psat4g016960 Pisum sativum HOM05D005173 ORTHO05D006214 2.9e-137 492.7 366 69.4
Medtr4g125660 Medicago truncatula HOM05D005173 ORTHO05D006214 3.8e-137 492.3 356 70.8
THA.LOC104799624 Tarenaya hassleriana HOM05D005173 ORTHO05D006214 6.6e-137 491.5 361 70.1
SalBow1G6961 Salvia bowleyana HOM05D005173 ORTHO05D006214 1.1e-136 490.7 404 66.1
PSO063G3756 Papaver somniferum HOM05D005173 ORTHO05D006214 1.9e-136 490.0 359 68.0
PSO421G0551 Papaver somniferum HOM05D005173 ORTHO05D006214 1.9e-136 490.0 359 68.0
Thhalv10014184m.g Eutrema salsugineum HOM05D005173 ORTHO05D006214 2.5e-136 489.6 363 67.2
Sp6g23940 Schrenkiella parvula HOM05D005173 ORTHO05D006214 4.2e-136 488.8 362 67.4
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 7.2e-136 488.0 365 68.5
BolC9t58435H Brassica oleracea HOM05D005173 ORTHO05D006214 9.5e-136 487.6 362 68.0
A02p06290 Brassica napus HOM05D005173 ORTHO05D006214 6.1e-135 485.0 356 68.5
BraA02t05577Z Brassica rapa HOM05D005173 ORTHO05D006214 6.1e-135 485.0 356 68.5
Nitab4.5_0001488g0160 Nicotiana tabacum HOM05D005173 ORTHO05D006214 6.1e-135 485.0 361 69.8
ECA234G3859 Erigeron canadensis HOM05D005173 ORTHO05D006214 1.4e-134 483.8 361 67.3
HanXRQChr09g0237971 Helianthus annuus HOM05D005173 ORTHO05D006214 1.8e-134 483.4 363 67.5
AL6G32050 Arabidopsis lyrata HOM05D005173 ORTHO05D006214 2.3e-134 483.0 363 67.5
CARHR192290 Cardamine hirsuta HOM05D005173 ORTHO05D006214 5.2e-134 481.9 363 67.5
BolC2t07046H Brassica oleracea HOM05D005173 ORTHO05D006214 6.8e-134 481.5 356 68.3
Nitab4.5_0013150g0020 Nicotiana tabacum HOM05D005173 ORTHO05D006214 6.8e-134 481.5 361 69.5
AT5G20520 Arabidopsis thaliana HOM05D005173 ORTHO05D006214 1.5e-133 480.3 363 67.2
Carub.0006s1885 Capsella rubella HOM05D005173 ORTHO05D006214 1.5e-133 480.3 356 68.8
Lj7C682G9 Lonicera japonica HOM05D005173 ORTHO05D006214 2.0e-133 479.9 363 68.0
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 1.7e-132 476.9 366 66.4
vmacro17173 Vaccinium macrocarpon HOM05D005173 ORTHO05D006214 2.2e-132 476.5 444 58.1
BcaB05g22843 Brassica carinata HOM05D005173 ORTHO05D006214 1.1e-131 474.2 356 68.0
Lsat_1_v5_gn_7_34821 Lactuca sativa HOM05D005173 ORTHO05D006214 1.1e-131 474.2 360 67.8
AUR62025172 Chenopodium quinoa HOM05D005173 ORTHO05D006214 1.4e-131 473.8 366 65.8
CDE04G2820 Ceratophyllum demersum HOM05D005173 ORTHO05D006214 2.4e-131 473.0 359 65.7
AUR62029004 Chenopodium quinoa HOM05D005173 ORTHO05D006214 5.4e-131 471.9 366 66.1
DCAR_024724 Daucus carota HOM05D005173 ORTHO05D006214 9.2e-131 471.1 356 66.6
Sabra18G0057400 Salix brachista HOM05D005173 ORTHO05D006214 2.7e-130 469.5 429 59.7
Ah.14g085040 Amaranthus hybridus HOM05D005173 ORTHO05D006214 2.9e-129 466.1 362 65.5
Peaxi162Scf00246g00045 Petunia axillaris HOM05D005173 ORTHO05D006214 5.0e-129 465.3 347 68.9
Sabra06G0114800 Salix brachista HOM05D005173 ORTHO05D006214 9.5e-128 461.1 386 64.0
unitig_22.g5750 Utricularia gibba HOM05D005173 ORTHO05D006214 5.8e-125 451.8 364 64.3
Zm00001eb108940 Zea mays HOM05D005173 ORTHO05D006214 1.9e-123 446.8 362 62.2
Os07g0608300 Oryza sativa ssp. japonica HOM05D005173 ORTHO05D006214 1.6e-122 443.7 362 60.5
Aa31LG1G14140 Aethionema arabicum HOM05D005173 ORTHO05D006214 3.0e-121 439.5 362 63.5
HPP92_006149 Vanilla planifolia HOM05D005173 ORTHO05D006214 1.1e-118 431.0 354 61.6
DCAR_028284 Daucus carota HOM05D005173 ORTHO05D006214 2.3e-118 429.9 374 59.4
SHI33752 Sapria himalayana HOM05D005173 ORTHO05D006214 3.4e-117 426.0 383 58.5
Rhsim05G0012900 Rhododendron simsii HOM05D005173 ORTHO05D006214 4.4e-117 425.6 368 62.0
Mapoly0002s0260 Marchantia polymorpha HOM05D005173 ORTHO05D006214 4.3e-112 409.1 351 61.0
SMO203G0271 Selaginella moellendorffii HOM05D005173 ORTHO05D006214 3.7e-108 396.0 348 60.3
BcaB05g22835 Brassica carinata HOM05D005173 ORTHO05D006214 3.8e-100 369.4 253 71.5
DCAR_031940 Daucus carota HOM05D005173 ORTHO05D006214 1.9e-99 367.1 356 54.5
ATR0598G148 Amborella trichopoda HOM05D005173 ORTHO05D006214 5.4e-99 365.5 256 71.1
BcaC03g13770 Brassica carinata HOM05D005173 ORTHO05D006214 2.3e-97 360.1 338 58.0
Pp3c15_14310 Physcomitrium patens HOM05D005173 ORTHO05D006214 5.8e-93 345.5 363 51.5
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 4.6e-90 335.9 233 73.8
QL02p061362 Quercus lobata HOM05D005173 ORTHO05D006214 4.3e-88 329.3 225 73.8
CBR_g3819 Chara braunii HOM05D005173 ORTHO05D006214 1.3e-87 327.8 349 50.7
TPR.G9429 Trifolium pratense HOM05D005173 ORTHO05D006214 5.8e-77 292.4 200 73.0
Rhsim03G0230600 Rhododendron simsii HOM05D005173 ORTHO05D006214 9.6e-72 275.0 256 59.0
HPP92_009230 Vanilla planifolia HOM05D005173 ORTHO05D006214 2.4e-70 270.4 199 67.8
Cre03.g160100 Chlamydomonas reinhardtii HOM05D005173 ORTHO05D006214 1.7e-52 211.1 348 36.2
TPR.G23232 Trifolium pratense HOM05D005173 ORTHO05D006214 8.5e-52 208.8 167 63.5
HPP92_009231 Vanilla planifolia HOM05D005173 ORTHO05D006214 1.0e-49 201.8 164 59.8
BNapus_Darmor_BZH_scaffold_38p01550 Brassica napus HOM05D005173 ORTHO05D006214 7.7e-45 185.7 102 86.3
SGA_v2.0_scaffold23G10070 Striga asiatica HOM05D005173 ORTHO05D006214 7.5e-32 142.5 118 63.6
Cfa026742 Carpinus fangiana HOM05D005173 ORTHO05D006214 1.1e-30 138.7 351 31.9
ClCG07G005020 Citrullus lanatus HOM05D005173 ORTHO05D006214 2.8e-23 114.0 77 75.3
PRCOL_00002900 Prasinoderma coloniale HOM05D005173 ORTHO05D006214 3.1e-22 110.5 347 27.1
Hma1.2p1_0440F.1_g153610 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 6.6e-20 102.8 78 62.8
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 2.9e-15 87.4 57 70.2
Lsat_1_v5_gn_5_98841 Lactuca sativa HOM05D005173 ORTHO05D006214 1.8e-14 84.7 125 40.8
CSS0040146 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 3.2e-14 84.0 47 76.6
Cfa023090 Carpinus fangiana HOM05D005173 ORTHO05D126580 4.1e-14 83.6 334 25.4
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.0e-09 68.9 44 72.7
Nn2g12540 Nelumbo nucifera HOM05D005173 ORTHO05D006214 2.3e-09 67.8 39 69.2
Haze_27227 Corylus avellana HOM05D000464 ORTHO05D000408 9.8e-08 62.4 113 31.9
SEGI_17932 Sequoiadendron giganteum HOM05D005173 ORTHO05D006214 2.9e-07 60.8 38 73.7
Oeu044596.1 Olea europaea HOM05D000464 ORTHO05D000408 6.4e-07 59.7 266 22.9
MCO15G111 Micromonas commoda HOM05D005173 ORTHO05D006214 8.3e-07 59.3 118 30.5
unitig_27.g25080 Utricularia gibba HOM05D000464 ORTHO05D000408 2.4e-06 57.8 205 24.4
AT1G13610 Arabidopsis thaliana HOM05D000464 ORTHO05D000408 3.2e-06 57.4 108 33.3
BcaB02g06457 Brassica carinata HOM05D000464 ORTHO05D000408 4.1e-06 57.0 106 32.1
SpUn0238_0020 Schrenkiella parvula HOM05D000464 ORTHO05D000408 4.1e-06 57.0 106 31.1
AL1G25394 Arabidopsis lyrata HOM05D000464 ORTHO05D000408 5.4e-06 56.6 106 34.0
SalBow6G4172 Salvia bowleyana HOM05D000464 ORTHO05D000408 5.4e-06 56.6 205 24.4
SalBow6G5374 Salvia bowleyana HOM05D000464 ORTHO05D000408 5.4e-06 56.6 205 24.4
Cfa009511 Carpinus fangiana HOM05D000464 ORTHO05D000408 7.0e-06 56.2 253 22.9
Thhalv10009744m.g Eutrema salsugineum HOM05D000464 ORTHO05D000408 9.2e-06 55.8 106 30.2


User provided reference genes

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