Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09292 Striga asiatica HOM05D006744 ORTHO05D008730 6.5e-261 903.7 506 100.0
Migut.D00876 Erythranthe guttata HOM05D006744 ORTHO05D008730 1.6e-150 537.0 537 64.1
TAR636G2563 Trochodendron aralioides HOM05D006744 ORTHO05D008730 8.8e-141 504.6 531 61.0
Oeu004177.1 Olea europaea HOM05D006744 ORTHO05D008730 1.2e-140 504.2 539 61.4
CSS0020219 Camellia sinensis var. sinensis HOM05D006744 ORTHO05D008730 2.0e-140 503.4 538 60.8
CSS0019879 Camellia sinensis var. sinensis HOM05D006744 ORTHO05D008730 4.4e-140 502.3 538 60.6
CANSAT54G0933 Cannabis sativa HOM05D006744 ORTHO05D008730 4.4e-140 502.3 539 59.4
MSTRG.21220 Avicennia marina HOM05D006744 ORTHO05D008730 9.8e-140 501.1 521 63.1
DCAR_005941 Daucus carota HOM05D006744 ORTHO05D008730 8.6e-136 488.0 527 60.5
RcHm_v2.0_Chr5g0066371 Rosa chinensis HOM05D006744 ORTHO05D008730 1.5e-135 487.3 538 58.9
Atru.chr3.3995 Acer truncatum HOM05D006744 ORTHO05D008730 4.3e-135 485.7 542 57.0
TAR636G3279 Trochodendron aralioides HOM05D006744 ORTHO05D008730 7.3e-135 485.0 531 59.3
MD03G1086000 Malus domestica HOM05D006744 ORTHO05D008730 4.7e-134 482.3 541 58.8
Manes.02G128600 Manihot esculenta HOM05D006744 ORTHO05D008730 6.1e-134 481.9 540 58.1
Nn2g11215 Nelumbo nucifera HOM05D006744 ORTHO05D008730 1.4e-133 480.7 548 57.7
Prupe.6G070200 Prunus persica HOM05D006744 ORTHO05D008730 1.4e-133 480.7 540 58.5
FvH4_3g36950 Fragaria vesca HOM05D006744 ORTHO05D008730 4.0e-133 479.2 539 58.4
Thecc.09G315400 Theobroma cacao HOM05D006744 ORTHO05D008730 5.2e-133 478.8 530 58.9
QL01p029218 Quercus lobata HOM05D006744 ORTHO05D008730 2.6e-132 476.5 542 59.0
PSO513G0104 Papaver somniferum HOM05D006744 ORTHO05D008730 4.4e-132 475.7 531 57.6
Cc01_g13360 Coffea canephora HOM05D006744 ORTHO05D008730 7.5e-132 474.9 601 54.4
Lj2C1069T8 Lonicera japonica HOM05D006744 ORTHO05D008730 6.4e-131 471.9 541 58.2
Gohir.D07G104700 Gossypium hirsutum HOM05D006744 ORTHO05D008730 1.1e-130 471.1 538 57.4
Potri.001G244800 Populus trichocarpa HOM05D006744 ORTHO05D008730 7.0e-130 468.4 535 58.5
PGSC0003DMG400002146 Solanum tuberosum HOM05D006744 ORTHO05D008730 9.2e-130 468.0 521 59.1
Peaxi162Scf00265g00210 Petunia axillaris HOM05D006744 ORTHO05D008730 2.7e-129 466.5 554 56.0
CAN.G141.11 Capsicum annuum HOM05D006744 ORTHO05D008730 7.8e-129 464.9 524 59.7
THA.LOC104810751 Tarenaya hassleriana HOM05D006744 ORTHO05D008730 1.0e-128 464.5 531 55.4
Glyma.11G135900 Glycine max HOM05D006744 ORTHO05D008730 1.7e-128 463.8 534 56.6
vmacro03026 Vaccinium macrocarpon HOM05D006744 ORTHO05D008730 2.3e-128 463.4 530 57.2
Solyc06g005710.3 Solanum lycopersicum HOM05D006744 ORTHO05D008730 6.6e-128 461.8 521 58.2
Sopen06g001690 Solanum pennellii HOM05D006744 ORTHO05D008730 1.1e-127 461.1 521 58.3
Potri.009G037000 Populus trichocarpa HOM05D006744 ORTHO05D008730 1.9e-127 460.3 532 58.3
VMungo1127G1123 Vigna mungo HOM05D006744 ORTHO05D008730 1.9e-127 460.3 532 56.4
Glyma.12G059600 Glycine max HOM05D006744 ORTHO05D008730 2.5e-127 459.9 535 56.4
Duzib168G0134 Durio zibethinus HOM05D006744 ORTHO05D008730 3.3e-127 459.5 537 56.4
arahy.Tifrunner.gnm1.ann1.5LUI7K Arachis hypogaea HOM05D006744 ORTHO05D008730 9.5e-127 458.0 537 56.1
Gorai.001G112600 Gossypium raimondii HOM05D006744 ORTHO05D008730 9.5e-127 458.0 538 56.3
arahy.Tifrunner.gnm1.ann1.6RB142 Arachis hypogaea HOM05D006744 ORTHO05D008730 1.2e-126 457.6 537 56.2
Lalb_Chr01g0003461 Lupinus albus HOM05D006744 ORTHO05D008730 4.7e-126 455.7 536 56.2
Lj3g0003575 Lotus japonicus HOM05D006744 ORTHO05D008730 6.2e-126 455.3 539 56.6
DCAR_007429 Daucus carota HOM05D006744 ORTHO05D008730 3.1e-125 453.0 517 58.0
Gohir.A07G100500 Gossypium hirsutum HOM05D006744 ORTHO05D008730 3.1e-125 453.0 538 55.8
TWI79G0292 Tripterygium wilfordii HOM05D006744 ORTHO05D008730 3.1e-125 453.0 534 58.4
Eucgr.B02306 Eucalyptus grandis HOM05D006744 ORTHO05D008730 5.2e-125 452.2 548 55.7
CiPaw.13G089100 Carya illinoinensis HOM05D006744 ORTHO05D008730 8.9e-125 451.4 537 56.4
Manes.01G169200 Manihot esculenta HOM05D006744 ORTHO05D008730 5.8e-124 448.7 540 56.3
Phvul.011G061600 Phaseolus vulgaris HOM05D006744 ORTHO05D008730 2.2e-123 446.8 532 55.3
PGR102G0876 Punica granatum HOM05D006744 ORTHO05D008730 2.2e-123 446.8 540 56.3
Ca_20615_v3 Cicer arietinum L. HOM05D006744 ORTHO05D008730 4.6e-121 439.1 543 55.1
BcaB05g23514 Brassica carinata HOM05D006744 ORTHO05D008730 6.0e-121 438.7 525 55.6
Thhalv10002484m.g Eutrema salsugineum HOM05D006744 ORTHO05D008730 1.7e-120 437.2 530 53.0
Sed0004789 Sechium edule HOM05D006744 ORTHO05D008730 3.0e-120 436.4 583 53.2
BolC1t03248H Brassica oleracea HOM05D006744 ORTHO05D008730 1.1e-119 434.5 525 54.5
BraA01t02520Z Brassica rapa HOM05D006744 ORTHO05D008730 1.1e-119 434.5 523 54.5
C01p33110 Brassica napus HOM05D006744 ORTHO05D008730 1.9e-119 433.7 525 54.5
Psat7g210440 Pisum sativum HOM05D006744 ORTHO05D008730 1.9e-119 433.7 532 55.5
BcaC09g49774 Brassica carinata HOM05D006744 ORTHO05D008730 3.3e-119 433.0 525 54.5
EL10Ac7g16071 Beta vulgaris HOM05D006744 ORTHO05D008730 5.6e-119 432.2 541 53.6
Lsat_1_v5_gn_5_169660 Lactuca sativa HOM05D006744 ORTHO05D008730 5.6e-119 432.2 528 55.1
A01p26030 Brassica napus HOM05D006744 ORTHO05D008730 7.3e-119 431.8 521 54.1
Cpa.g.sc81.95 Carica papaya HOM05D006744 ORTHO05D008730 9.5e-119 431.4 439 59.5
Ciclev10030042m.g Citrus clementina HOM05D006744 ORTHO05D008730 9.5e-119 431.4 540 54.4
Haze_24176 Corylus avellana HOM05D006744 ORTHO05D008730 6.2e-118 428.7 581 53.2
TPR.G23627 Trifolium pratense HOM05D006744 ORTHO05D008730 8.1e-118 428.3 556 52.9
AL5G25790 Arabidopsis lyrata HOM05D006744 ORTHO05D008730 2.3e-117 426.8 520 52.9
MBI14_g11597_MAGBIO Magnolia biondii HOM05D006744 ORTHO05D008730 8.9e-117 424.9 521 53.7
MELO3C025888.2 Cucumis melo HOM05D006744 ORTHO05D008730 7.5e-116 421.8 603 49.4
AUR62020042 Chenopodium quinoa HOM05D006744 ORTHO05D008730 9.8e-116 421.4 530 54.2
AT3G46780 Arabidopsis thaliana HOM05D006744 ORTHO05D008730 1.3e-115 421.0 521 52.6
COL.COLO4_18579 Corchorus olitorius HOM05D006744 ORTHO05D008730 1.7e-115 420.6 549 52.6
CsaV3_6G016590 Cucumis sativus L. HOM05D006744 ORTHO05D008730 2.2e-115 420.2 597 48.6
CsaV3_7G010020 Cucumis sativus L. HOM05D006744 ORTHO05D008730 2.2e-115 420.2 597 48.6
Hund04920 Selenicereus undatus HOM05D006744 ORTHO05D008730 1.1e-114 417.9 532 53.6
unitig_746.g26716 Utricularia gibba HOM05D006744 ORTHO05D008730 1.4e-114 417.5 516 53.7
Haze_24171 Corylus avellana HOM05D006744 ORTHO05D008730 3.2e-114 416.4 494 58.5
Aqoxy2G02327 Aquilegia oxysepala HOM05D006744 ORTHO05D008730 1.6e-113 414.1 532 54.3
Dinv17049 Davidia involucrata HOM05D006744 ORTHO05D008730 1.0e-112 411.4 528 54.7
Dinv42993 Davidia involucrata HOM05D006744 ORTHO05D008730 1.0e-112 411.4 528 54.7
Dinv43104 Davidia involucrata HOM05D006744 ORTHO05D008730 1.0e-112 411.4 528 54.7
Ah.08g220080 Amaranthus hybridus HOM05D006744 ORTHO05D008730 1.7e-112 410.6 541 52.5
Carub.0005s1303 Capsella rubella HOM05D006744 ORTHO05D008730 1.7e-112 410.6 587 50.1
HanXRQChr01g0010651 Helianthus annuus HOM05D006744 ORTHO05D008730 1.5e-111 407.5 537 53.1
Nitab4.5_0000102g0310 Nicotiana tabacum HOM05D006744 ORTHO05D008730 7.3e-111 405.2 519 54.3
HanXRQChr11g0340641 Helianthus annuus HOM05D006744 ORTHO05D008730 1.6e-110 404.1 532 52.6
ATR0559G062 Amborella trichopoda HOM05D006744 ORTHO05D008730 8.1e-110 401.7 440 57.7
Aa31LG4G15710 Aethionema arabicum HOM05D006744 ORTHO05D008730 5.2e-109 399.1 527 51.2
ClCG02G019880 Citrullus lanatus HOM05D006744 ORTHO05D008730 1.5e-108 397.5 599 47.9
Sp5g14930 Schrenkiella parvula HOM05D006744 ORTHO05D008730 5.8e-108 395.6 607 46.3
Os05g0291700 Oryza sativa ssp. japonica HOM05D006744 ORTHO05D008730 2.2e-107 393.7 514 50.8
ECA248G1499 Erigeron canadensis HOM05D006744 ORTHO05D008730 4.1e-106 389.4 525 53.0
Medtr4g064750 Medicago truncatula HOM05D006744 ORTHO05D008730 4.1e-106 389.4 521 52.6
HPP92_012610 Vanilla planifolia HOM05D006744 ORTHO05D008730 8.6e-104 381.7 490 53.7
Actinidia08543 Actinidia chinensis HOM05D006744 ORTHO05D008730 2.6e-100 370.2 532 53.0
CDE02G4503 Ceratophyllum demersum HOM05D006744 ORTHO05D008730 3.8e-99 366.3 557 45.8
Dinv34288 Davidia involucrata HOM05D006744 ORTHO05D008730 3.2e-98 363.2 335 66.3
CDE09G0068 Ceratophyllum demersum HOM05D006744 ORTHO05D008730 1.2e-97 361.3 564 45.0
GSVIVG01024905001 Vitis vinifera HOM05D006744 ORTHO05D008730 3.3e-95 353.2 390 60.8
Zm00001eb346280 Zea mays HOM05D006744 ORTHO05D008730 5.1e-88 329.3 530 47.0
Sc21g0006010 Simmondsia chinensis HOM05D006744 ORTHO05D008730 5.8e-84 315.8 357 54.3
Nitab4.5_0004892g0030 Nicotiana tabacum HOM05D006744 ORTHO05D010418 8.4e-83 312.0 374 55.9
Actinidia33767 Actinidia chinensis HOM05D006744 ORTHO05D008730 1.9e-82 310.8 260 70.0
CARHR154880 Cardamine hirsuta HOM05D006744 ORTHO05D008730 6.9e-77 292.4 284 59.9
Duzib170G1039 Durio zibethinus HOM05D006744 ORTHO05D008730 7.1e-74 282.3 297 56.6
SEGI_15287 Sequoiadendron giganteum HOM05D006744 ORTHO05D008730 1.1e-69 268.5 516 39.5
Mapoly0154s0018 Marchantia polymorpha HOM05D006744 ORTHO05D008730 2.6e-52 210.7 466 37.3
AagrBONN_evm.TU.Sc2ySwM_117.3415 Anthoceros agrestis HOM05D006744 ORTHO05D008730 1.1e-50 205.3 314 44.3
Pp3c1_14800 Physcomitrium patens HOM05D006744 ORTHO05D008730 1.9e-50 204.5 461 38.8
CBR_g39489 Chara braunii HOM05D006744 ORTHO05D008730 1.5e-42 178.3 287 41.5
SMO145G0221 Selaginella moellendorffii HOM05D006744 ORTHO05D008730 3.0e-40 170.6 199 48.2
Actinidia01965 Actinidia chinensis HOM05D006744 ORTHO05D008730 8.3e-22 109.4 123 55.3
Hma1.2p1_0615F.1_g189650 Hydrangea macrophylla HOM05D006744 ORTHO05D008730 1.1e-18 99.0 154 51.3
CAN.G624.26 Capsicum annuum HOM05D006744 ORTHO05D008730 4.3e-18 97.1 76 69.7
CAN.G84.41 Capsicum annuum HOM05D002560 ORTHO05D000293 6.8e-16 89.7 95 56.8
CAN.G399.7 Capsicum annuum HOM05D006744 ORTHO05D008730 2.9e-14 84.3 73 64.4
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.2e-12 79.0 70 62.9
Ca_20841_v3 Cicer arietinum L. HOM05D005785 ORTHO05D007962 3.5e-12 77.4 281 29.9
Eucgr.G00478 Eucalyptus grandis HOM05D005785 ORTHO05D007962 5.9e-12 76.6 347 27.4
CBR_g23485 Chara braunii HOM05D005785 ORTHO05D007962 3.0e-11 74.3 134 33.6
SMO146G0207 Selaginella moellendorffii HOM05D005785 ORTHO05D007962 8.6e-11 72.8 292 25.0
Potri.009G111323 Populus trichocarpa HOM05D005785 ORTHO05D007962 1.1e-10 72.4 331 27.2
Potri.T124404 Populus trichocarpa HOM05D005785 ORTHO05D007962 1.1e-10 72.4 331 27.2
CANSAT80G1909 Cannabis sativa HOM05D005785 ORTHO05D007962 1.9e-10 71.6 274 28.8
CSS0030803 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 2.5e-10 71.2 274 29.6
THA.LOC104800353 Tarenaya hassleriana HOM05D005785 ORTHO05D007962 2.5e-10 71.2 349 27.2
BraA05t21908Z Brassica rapa HOM05D005785 ORTHO05D007962 3.3e-10 70.9 320 26.6
COL.COLO4_32470 Corchorus olitorius HOM05D005785 ORTHO05D007962 4.3e-10 70.5 321 27.4
A05p30660 Brassica napus HOM05D005785 ORTHO05D007962 5.6e-10 70.1 320 26.6
Cre06.g269050 Chlamydomonas reinhardtii HOM05D005785 ORTHO05D007962 7.3e-10 69.7 372 25.8
Gorai.005G229200 Gossypium raimondii HOM05D005785 ORTHO05D007962 1.2e-09 68.9 310 26.8
Phvul.011G048000 Phaseolus vulgaris HOM05D005785 ORTHO05D007962 1.6e-09 68.6 274 28.1
Sabra09G0085100 Salix brachista HOM05D005785 ORTHO05D007962 1.6e-09 68.6 360 26.1
C05p46540 Brassica napus HOM05D005785 ORTHO05D007962 2.1e-09 68.2 323 26.0
Ciclev10028081m.g Citrus clementina HOM05D005785 ORTHO05D007962 2.1e-09 68.2 326 27.6
Duzib132G1036 Durio zibethinus HOM05D005785 ORTHO05D007962 2.1e-09 68.2 270 28.9
Migut.B00273 Erythranthe guttata HOM05D005785 ORTHO05D007962 2.1e-09 68.2 323 27.2
VMungo1127G1831 Vigna mungo HOM05D005785 ORTHO05D007962 2.1e-09 68.2 274 27.7
Aa31LG8G5730 Aethionema arabicum HOM05D005785 ORTHO05D007962 3.6e-09 67.4 276 27.2
Aqoxy6G00992 Aquilegia oxysepala HOM05D005785 ORTHO05D007962 3.6e-09 67.4 269 29.4
Glyma.12G046200 Glycine max HOM05D005785 ORTHO05D007962 3.6e-09 67.4 272 27.9
Hma1.2p1_2724F.1_g327500 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 3.6e-09 67.4 270 28.5
Dinv25495 Davidia involucrata HOM05D006744 ORTHO05D008730 6.2e-09 66.6 115 47.0
Lalb_Chr03g0025851 Lupinus albus HOM05D005785 ORTHO05D007962 6.2e-09 66.6 274 28.8
FvH4_2g07870 Fragaria vesca HOM05D005785 ORTHO05D007962 8.0e-09 66.2 358 25.1
Nn5g31359 Nelumbo nucifera HOM05D005785 ORTHO05D007962 8.0e-09 66.2 299 26.1
Sp3g16990 Schrenkiella parvula HOM05D005785 ORTHO05D007962 8.0e-09 66.2 309 26.9
BcaB06g25943 Brassica carinata HOM05D005785 ORTHO05D007962 1.0e-08 65.9 319 25.1
vmacro02148 Vaccinium macrocarpon HOM05D005785 ORTHO05D007962 1.4e-08 65.5 281 28.5
Pp3c10_3330 Physcomitrium patens HOM05D005785 ORTHO05D000513 1.8e-08 65.1 275 28.0
Nn5g29471 Nelumbo nucifera HOM05D005785 ORTHO05D007962 2.3e-08 64.7 312 26.3
PSO541G4825 Papaver somniferum HOM05D005785 ORTHO05D007962 2.3e-08 64.7 266 28.6
TAR628G1306 Trochodendron aralioides HOM05D005785 ORTHO05D007962 2.3e-08 64.7 414 27.1
PSO675G5886 Papaver somniferum HOM05D005785 ORTHO05D007962 4.0e-08 63.9 266 28.2
BolC5t33383H Brassica oleracea HOM05D005785 ORTHO05D007962 5.2e-08 63.5 333 24.6
CsaV3_7G010200 Cucumis sativus L. HOM05D005785 ORTHO05D007962 5.2e-08 63.5 309 27.8
arahy.Tifrunner.gnm1.ann1.T05FEK Arachis hypogaea HOM05D005785 ORTHO05D007962 6.8e-08 63.2 269 26.8
Manes.15G147600 Manihot esculenta HOM05D005785 ORTHO05D007962 6.8e-08 63.2 312 28.2
ATR0733G035 Amborella trichopoda HOM05D005785 ORTHO05D007962 8.9e-08 62.8 277 28.5
Dinv23561 Davidia involucrata HOM05D005785 ORTHO05D007962 8.9e-08 62.8 323 27.9
Potri.004G150300 Populus trichocarpa HOM05D005785 ORTHO05D007962 8.9e-08 62.8 281 27.4
Carub.0003s1872 Capsella rubella HOM05D005785 ORTHO05D007962 1.5e-07 62.0 276 26.1
QL11p040109 Quercus lobata HOM05D005785 ORTHO05D007962 1.5e-07 62.0 322 27.6
Thecc.02G121200 Theobroma cacao HOM05D005785 ORTHO05D007962 1.5e-07 62.0 323 27.6
SEGI_40956 Sequoiadendron giganteum HOM05D005785 ORTHO05D007962 2.0e-07 61.6 341 26.7
Cc02_g17970 Coffea canephora HOM05D005785 ORTHO05D007962 2.6e-07 61.2 302 26.8
MELO3C018409.2 Cucumis melo HOM05D005785 ORTHO05D007962 2.6e-07 61.2 309 27.8
ECA236G5032 Erigeron canadensis HOM05D005785 ORTHO05D007962 2.6e-07 61.2 293 25.9
Medtr4g068970 Medicago truncatula HOM05D005785 ORTHO05D007962 2.6e-07 61.2 322 27.0
Glyma.11G121100 Glycine max HOM05D005785 ORTHO05D007962 3.4e-07 60.8 272 26.5
Lsat_1_v5_gn_7_89860 Lactuca sativa HOM05D005785 ORTHO05D007962 4.4e-07 60.5 307 26.4
Lj3g0001588 Lotus japonicus HOM05D005785 ORTHO05D007962 5.8e-07 60.1 310 27.7
Prupe.8G106300 Prunus persica HOM05D005785 ORTHO05D007962 5.8e-07 60.1 332 26.2
Haze_02424 Corylus avellana HOM05D005785 ORTHO05D007962 7.5e-07 59.7 322 27.0
Os10g0100300 Oryza sativa ssp. japonica HOM05D005785 ORTHO05D007962 7.5e-07 59.7 323 27.2
Zm00001eb118450 Zea mays HOM05D005785 ORTHO05D007962 7.5e-07 59.7 272 28.3
TPR.G28051 Trifolium pratense HOM05D005785 ORTHO05D007962 9.8e-07 59.3 328 26.2
FAN20G1723 Fragaria x ananassa HOM05D005785 ORTHO05D007962 1.3e-06 58.9 380 24.5
HanXRQChr16g0505051 Helianthus annuus HOM05D005785 ORTHO05D007962 1.3e-06 58.9 293 26.3
Psat7g185400 Pisum sativum HOM05D005785 ORTHO05D007962 1.7e-06 58.5 289 25.6
TWI79G0480 Tripterygium wilfordii HOM05D005785 ORTHO05D007962 1.7e-06 58.5 327 26.9
Atru.chr5.2923 Acer truncatum HOM05D005785 ORTHO05D007962 2.2e-06 58.2 333 26.1
MD10G1083200 Malus domestica HOM05D005785 ORTHO05D007962 2.2e-06 58.2 389 26.5
Sc14g0001770 Simmondsia chinensis HOM05D005785 ORTHO05D007962 2.9e-06 57.8 322 27.3
PGSC0003DMG400008269 Solanum tuberosum HOM05D005785 ORTHO05D007962 3.7e-06 57.4 375 26.1
Gohir.D02G203047 Gossypium hirsutum HOM05D005785 ORTHO05D007962 4.9e-06 57.0 254 27.2
Gohir.A03G180301 Gossypium hirsutum HOM05D005785 ORTHO05D007962 6.4e-06 56.6 254 28.0
Sopen10g022810 Solanum pennellii HOM05D005785 ORTHO05D007962 6.4e-06 56.6 318 26.7


User provided reference genes

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