Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09184 Striga asiatica HOM05D042722 ORTHO05D051393 3.0e-97 358.6 191 100.0
SGA_v2.0_scaffold153G37075 Striga asiatica HOM05D042722 ORTHO05D051393 6.9e-38 161.4 104 89.4
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 3.3e-16 89.4 51 88.2
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 3.1e-14 82.8 51 78.4
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 3.5e-13 79.3 51 76.5
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 1.1e-11 74.3 51 70.6
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 4.7e-10 68.9 46 71.7
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 6.1e-10 68.6 55 58.2
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 2.3e-09 66.6 49 67.3
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 2.3e-09 66.6 49 65.3
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 3.0e-09 66.2 49 67.3
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 4.0e-09 65.9 51 64.7
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 5.2e-09 65.5 49 65.3
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 6.8e-09 65.1 49 63.3
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 6.8e-09 65.1 51 62.7
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 6.8e-09 65.1 48 64.6
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 6.8e-09 65.1 51 62.7
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 6.8e-09 65.1 49 67.3
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 6.8e-09 65.1 49 65.3
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 6.8e-09 65.1 51 62.7
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 6.8e-09 65.1 51 62.7
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 8.8e-09 64.7 49 65.3
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 8.8e-09 64.7 51 60.8
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 8.8e-09 64.7 49 63.3
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 1.2e-08 64.3 49 61.2
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.5e-08 63.9 49 59.2
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.5e-08 63.9 49 59.2
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.5e-08 63.9 49 59.2
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 1.5e-08 63.9 51 58.8
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 1.5e-08 63.9 49 65.3
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 61.2
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 61.2
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 61.2
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 61.2
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 61.2
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 61.2
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 61.2
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 61.2
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 61.2
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 65.3
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 57.1
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 2.0e-08 63.5 60 53.3
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 2.0e-08 63.5 49 65.3
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 2.6e-08 63.2 49 63.3
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 2.6e-08 63.2 49 61.2
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 2.6e-08 63.2 49 61.2
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 2.6e-08 63.2 49 65.3
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 2.6e-08 63.2 49 61.2
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 3.4e-08 62.8 49 63.3
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 3.4e-08 62.8 60 51.7
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 3.4e-08 62.8 49 59.2
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 3.4e-08 62.8 49 63.3
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 3.4e-08 62.8 46 67.4
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 3.4e-08 62.8 49 61.2
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 3.4e-08 62.8 49 63.3
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 3.4e-08 62.8 49 63.3
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 4.4e-08 62.4 49 59.2
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 4.4e-08 62.4 49 59.2
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 4.4e-08 62.4 49 59.2
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 4.4e-08 62.4 51 54.9
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 4.4e-08 62.4 51 54.9
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 5.7e-08 62.0 51 54.9
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 5.7e-08 62.0 50 60.0
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 5.7e-08 62.0 49 59.2
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 5.7e-08 62.0 46 63.0
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 5.7e-08 62.0 51 54.9
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 7.5e-08 61.6 51 52.9
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 7.5e-08 61.6 49 57.1
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.5e-08 61.6 49 57.1
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.5e-08 61.6 49 57.1
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 7.5e-08 61.6 49 59.2
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 9.8e-08 61.2 49 61.2
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 9.8e-08 61.2 49 61.2
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 9.8e-08 61.2 49 61.2
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 9.8e-08 61.2 49 59.2
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 9.8e-08 61.2 49 59.2
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 9.8e-08 61.2 49 61.2
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 9.8e-08 61.2 49 63.3
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 1.3e-07 60.8 60 51.7
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 1.3e-07 60.8 49 57.1
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 1.7e-07 60.5 49 61.2
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 1.7e-07 60.5 51 52.9
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 2.2e-07 60.1 87 39.1
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 2.2e-07 60.1 51 51.0
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 2.2e-07 60.1 51 54.9
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 2.8e-07 59.7 49 59.2
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 3.7e-07 59.3 46 60.9
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 3.7e-07 59.3 49 59.2
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 3.7e-07 59.3 49 53.1
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 4.8e-07 58.9 52 55.8
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 4.8e-07 58.9 49 57.1
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 4.8e-07 58.9 49 57.1
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 4.8e-07 58.9 49 57.1
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 4.8e-07 58.9 46 60.9
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 4.8e-07 58.9 49 57.1
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 6.3e-07 58.5 90 46.7
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 6.3e-07 58.5 46 58.7
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 8.3e-07 58.2 46 58.7
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.1e-06 57.8 49 55.1
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 1.1e-06 57.8 51 51.0
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 1.4e-06 57.4 49 51.0
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 1.8e-06 57.0 49 53.1
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.4e-06 56.6 49 53.1
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.0e-06 55.1 49 49.0
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 9.1e-06 54.7 49 53.1


User provided reference genes

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