Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 9.7e-115 416.8 203 100.0
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 7.5e-83 310.8 184 76.6
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 3.7e-82 308.5 185 78.9
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.7e-82 308.5 177 82.5
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 3.2e-81 305.4 185 75.7
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 4.6e-80 301.6 185 74.6
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 3.9e-79 298.5 178 77.5
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.5e-78 296.6 178 75.8
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.9e-78 296.2 180 75.6
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 1.9e-78 296.2 178 78.1
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.5e-78 295.8 178 76.4
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 3.3e-78 295.4 185 74.6
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 5.6e-78 294.7 180 73.9
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 7.3e-78 294.3 183 73.2
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 7.3e-78 294.3 183 73.2
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 7.3e-78 294.3 183 74.9
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 7.3e-78 294.3 179 78.2
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.2e-77 293.5 178 74.7
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.6e-77 293.1 178 78.1
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 3.6e-77 292.0 178 74.2
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 4.7e-77 291.6 178 75.8
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 8.1e-77 290.8 179 74.3
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 1.4e-76 290.0 178 75.8
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.4e-76 290.0 182 71.4
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.4e-76 290.0 180 75.6
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 4.0e-76 288.5 178 74.2
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.2e-76 288.1 178 73.6
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 5.2e-76 288.1 178 75.8
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 6.8e-76 287.7 178 73.0
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.2e-75 287.0 178 75.3
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 1.2e-75 287.0 177 74.0
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.5e-75 286.6 178 74.2
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.5e-75 286.6 178 73.6
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.0e-75 286.2 178 73.6
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 2.6e-75 285.8 183 72.1
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 2.6e-75 285.8 182 73.6
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 3.4e-75 285.4 178 72.5
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 3.4e-75 285.4 178 72.5
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 3.4e-75 285.4 178 75.3
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 4.4e-75 285.0 178 75.8
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.5e-75 284.3 178 74.2
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 7.5e-75 284.3 178 74.2
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 7.5e-75 284.3 178 74.7
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-74 283.5 178 73.6
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-74 283.5 184 72.3
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.3e-74 283.5 180 71.7
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.7e-74 283.1 178 73.0
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.7e-74 283.1 178 73.6
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 2.2e-74 282.7 178 74.7
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 3.7e-74 282.0 178 71.9
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 3.7e-74 282.0 178 71.9
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.7e-74 282.0 178 71.9
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 4.9e-74 281.6 177 74.0
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 6.4e-74 281.2 178 73.0
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 1.1e-73 280.4 183 71.6
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.4e-73 280.0 178 71.3
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.4e-73 280.0 178 73.6
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 1.9e-73 279.6 184 71.7
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.4e-73 279.3 180 69.4
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.4e-73 278.1 178 70.8
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 5.4e-73 278.1 178 70.8
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 7.1e-73 277.7 183 69.4
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 9.2e-73 277.3 178 72.5
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 9.2e-73 277.3 179 72.1
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.6e-72 276.6 178 70.8
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.5e-72 275.4 178 69.7
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.5e-72 275.4 178 69.7
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 4.6e-72 275.0 178 70.8
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 4.6e-72 275.0 179 70.9
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 4.6e-72 275.0 178 70.2
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.6e-72 275.0 178 68.0
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 4.6e-72 275.0 180 68.3
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.0e-72 274.6 178 71.3
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.3e-71 273.5 178 69.7
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.3e-71 273.5 178 68.0
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.3e-71 273.5 178 71.3
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.7e-71 273.1 178 70.8
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 3.0e-71 272.3 177 71.2
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.0e-71 272.3 178 69.7
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 6.6e-71 271.2 183 66.7
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.6e-71 271.2 178 70.2
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 8.6e-71 270.8 178 69.1
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-70 270.4 178 68.5
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.1e-70 270.4 178 68.5
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.5e-70 270.0 178 68.5
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.9e-70 269.6 178 68.5
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.9e-70 269.6 186 65.1
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 3.3e-70 268.9 178 68.5
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 4.3e-70 268.5 178 69.1
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 9.5e-70 267.3 178 66.3
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.2e-69 266.9 178 68.5
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 2.8e-69 265.8 178 69.1
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 3.6e-69 265.4 178 68.5
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 3.6e-69 265.4 178 68.0
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 3.6e-69 265.4 178 69.7
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 3.6e-69 265.4 178 69.7
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.6e-69 265.4 178 69.1
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 6.2e-69 264.6 178 69.1
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 6.2e-69 264.6 184 66.8
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 6.2e-69 264.6 178 70.2
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.4e-68 263.5 178 69.1
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.4e-68 263.5 178 69.1
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.4e-68 263.5 178 69.1
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 4.0e-68 261.9 178 69.1
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 6.8e-68 261.2 178 68.0
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 3.4e-67 258.8 178 66.3
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.4e-67 258.5 177 67.2
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 5.8e-67 258.1 187 67.9
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 7.6e-67 257.7 178 66.3
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 4.9e-66 255.0 179 65.9
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 1.9e-65 253.1 176 64.2
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 3.2e-65 252.3 179 64.2
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 5.4e-65 251.5 170 67.6
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.1e-64 249.6 179 63.7
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.5e-64 248.8 178 64.0
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 6.0e-64 248.1 179 65.9
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 6.0e-64 248.1 176 64.8
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 6.0e-64 248.1 179 63.1
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 7.8e-64 247.7 178 64.0
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.0e-63 247.3 181 63.0
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.0e-63 247.3 181 63.0
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.0e-63 245.7 179 63.1
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.9e-62 243.0 178 64.0
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.6e-61 240.0 188 59.0
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 4.7e-61 238.4 180 61.7
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 3.4e-59 232.3 177 60.5
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.7e-58 229.9 177 61.0
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.9e-58 229.2 178 62.9
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 3.2e-57 225.7 183 58.5
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 2.3e-55 219.5 178 58.4
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 3.3e-54 215.7 180 57.2
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.9e-49 199.9 178 56.7
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 5.4e-49 198.4 159 61.6
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.7e-47 193.4 182 55.5
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.5e-46 189.5 121 69.4
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 3.4e-43 179.1 195 48.7
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.9e-42 175.3 116 67.2
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.2e-40 170.6 162 50.6
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 3.3e-38 162.5 179 41.3
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 5.0e-26 122.1 104 57.7
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.1e-24 116.7 76 72.4
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.0e-23 114.4 99 54.5
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 1.4e-20 104.0 164 34.1
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 5.9e-11 72.0 50 62.0
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 8.5e-10 68.2 59 50.8
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 1.1e-09 67.8 55 52.7
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 3.9e-07 59.3 42 61.9


User provided reference genes

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