Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold203G41554 Striga asiatica HOM05D000029 ORTHO05D030689 5.0e-66 254.2 122 100.0
SGA_v2.0_scaffold80G25958 Striga asiatica HOM05D000029 ORTHO05D030689 4.9e-21 104.8 130 53.1
SGA_v2.0_scaffold102G29917 Striga asiatica HOM05D000029 ORTHO05D030689 3.0e-18 95.5 117 52.1
SGA_v2.0_scaffold1G00708 Striga asiatica HOM05D000029 ORTHO05D002519 1.1e-09 67.0 101 45.5
Nn3g19879 Nelumbo nucifera HOM05D000029 ORTHO05D002519 4.8e-08 61.6 104 41.3
MSTRG.17539 Avicennia marina HOM05D000029 ORTHO05D002519 6.2e-08 61.2 104 42.3
Gohir.A07G154950 Gossypium hirsutum HOM05D000029 ORTHO05D002519 1.8e-07 59.7 104 41.3
Gohir.D07G161200 Gossypium hirsutum HOM05D000029 ORTHO05D002519 1.8e-07 59.7 104 41.3
Gorai.001G184400 Gossypium raimondii HOM05D000029 ORTHO05D002519 1.8e-07 59.7 104 41.3
Lj1A82T76 Lonicera japonica HOM05D000029 ORTHO05D002519 1.8e-07 59.7 98 40.8
Sc05g0002330 Simmondsia chinensis HOM05D000029 ORTHO05D002519 2.4e-07 59.3 104 40.4
Sed0013222 Sechium edule HOM05D000029 ORTHO05D002519 3.1e-07 58.9 101 41.6
SalBow4G3012 Salvia bowleyana HOM05D000029 ORTHO05D002519 4.0e-07 58.5 92 39.1
Manes.13G043600 Manihot esculenta HOM05D000029 ORTHO05D002519 5.3e-07 58.2 104 41.3
PGR142G1325 Punica granatum HOM05D000029 ORTHO05D002519 5.3e-07 58.2 103 40.8
THA.LOC104803100 Tarenaya hassleriana HOM05D000029 ORTHO05D002519 5.3e-07 58.2 104 37.5
vmacro02737 Vaccinium macrocarpon HOM05D000029 ORTHO05D002519 5.3e-07 58.2 100 38.0
arahy.Tifrunner.gnm1.ann1.TP6E81 Arachis hypogaea HOM05D000029 ORTHO05D002519 6.9e-07 57.8 106 39.6
arahy.Tifrunner.gnm1.ann1.YZ3LMI Arachis hypogaea HOM05D000029 ORTHO05D002519 6.9e-07 57.8 106 39.6
Nn1g03122 Nelumbo nucifera HOM05D000029 ORTHO05D002519 6.9e-07 57.8 104 41.3
Duzib133G0484 Durio zibethinus HOM05D000029 ORTHO05D002519 9.0e-07 57.4 104 40.4
Lalb_Chr03g0041971 Lupinus albus HOM05D000029 ORTHO05D002519 9.0e-07 57.4 105 40.0
PGSC0003DMG400015814 Solanum tuberosum HOM05D000029 ORTHO05D002519 9.0e-07 57.4 105 41.0
THA.LOC104821616 Tarenaya hassleriana HOM05D000029 ORTHO05D002519 9.0e-07 57.4 120 35.0
EL10Ac3g06784 Beta vulgaris HOM05D000029 ORTHO05D002519 1.2e-06 57.0 101 39.6
EL10Ac3g06785 Beta vulgaris HOM05D000029 ORTHO05D002519 1.2e-06 57.0 101 39.6
BcaC04g23755 Brassica carinata HOM05D000029 ORTHO05D002519 1.2e-06 57.0 96 43.8
A09p04700 Brassica napus HOM05D000029 ORTHO05D002519 1.2e-06 57.0 96 43.8
BolC9t53430H Brassica oleracea HOM05D000029 ORTHO05D002519 1.2e-06 57.0 96 43.8
BraA09t36107Z Brassica rapa HOM05D000029 ORTHO05D002519 1.2e-06 57.0 96 43.8
AUR62008890 Chenopodium quinoa HOM05D000029 ORTHO05D002519 1.2e-06 57.0 99 41.4
Nitab4.5_0001657g0030 Nicotiana tabacum HOM05D000029 ORTHO05D002519 1.2e-06 57.0 105 40.0
Sopen09g025030 Solanum pennellii HOM05D000029 ORTHO05D002519 1.2e-06 57.0 105 41.0
TWI14G0326 Tripterygium wilfordii HOM05D000029 ORTHO05D002519 1.2e-06 57.0 103 40.8
Actinidia37575 Actinidia chinensis HOM05D000029 ORTHO05D002519 1.5e-06 56.6 96 37.5
MSTRG.12502 Avicennia marina HOM05D000029 ORTHO05D002519 1.5e-06 56.6 104 40.4
COL.COLO4_36852 Corchorus olitorius HOM05D000029 ORTHO05D002519 1.5e-06 56.6 104 40.4
HanXRQChr01g0022681 Helianthus annuus HOM05D000029 ORTHO05D002519 1.5e-06 56.6 101 38.6
Peaxi162Scf00052g00121 Petunia axillaris HOM05D000029 ORTHO05D002519 1.5e-06 56.6 106 39.6
Thecc.04G212000 Theobroma cacao HOM05D000029 ORTHO05D002519 1.5e-06 56.6 101 40.6
Cpa.g.sc59.90 Carica papaya HOM05D000029 ORTHO05D002519 2.0e-06 56.2 101 39.6
CiPaw.03G152500 Carya illinoinensis HOM05D000029 ORTHO05D002519 2.0e-06 56.2 105 35.2
AUR62031820 Chenopodium quinoa HOM05D000029 ORTHO05D002519 2.0e-06 56.2 99 41.4
Ca_22685_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002519 2.0e-06 56.2 107 33.6
Duzib138G0670 Durio zibethinus HOM05D000029 ORTHO05D002519 2.0e-06 56.2 104 38.5
Duzib212G0815 Durio zibethinus HOM05D000029 ORTHO05D002519 2.0e-06 56.2 101 38.6
Glyma.18G176000 Glycine max HOM05D000029 ORTHO05D002519 2.0e-06 56.2 105 35.2
Gohir.D10G145100 Gossypium hirsutum HOM05D000029 ORTHO05D002519 2.0e-06 56.2 101 38.6
Gorai.011G162100 Gossypium raimondii HOM05D000029 ORTHO05D002519 2.0e-06 56.2 101 38.6
Phvul.008G122200 Phaseolus vulgaris HOM05D000029 ORTHO05D002519 2.0e-06 56.2 106 36.8
Solyc09g061940.3 Solanum lycopersicum HOM05D000029 ORTHO05D002519 2.0e-06 56.2 106 39.6
GSVIVG01028542001 Vitis vinifera HOM05D000029 ORTHO05D002519 2.0e-06 56.2 95 37.9
BcaB04g19593 Brassica carinata HOM05D000029 ORTHO05D002519 2.6e-06 55.8 96 42.7
Cfa014894 Carpinus fangiana HOM05D000029 ORTHO05D002519 2.6e-06 55.8 101 37.6
Ciclev10023582m.g Citrus clementina HOM05D000029 ORTHO05D002519 2.6e-06 55.8 114 35.1
Eucgr.H02861 Eucalyptus grandis HOM05D000029 ORTHO05D002519 2.6e-06 55.8 101 39.6
Gohir.A10G121200 Gossypium hirsutum HOM05D000029 ORTHO05D002519 2.6e-06 55.8 101 38.6
Oeu023928.1 Olea europaea HOM05D000029 ORTHO05D002519 2.6e-06 55.8 101 38.6
CARHR284640 Cardamine hirsuta HOM05D000029 ORTHO05D002519 3.4e-06 55.5 102 38.2
AUR62032662 Chenopodium quinoa HOM05D000029 ORTHO05D002519 3.4e-06 55.5 100 38.0
ClCG06G007600 Citrullus lanatus HOM05D000029 ORTHO05D002519 3.4e-06 55.5 101 38.6
Ciclev10004202m.g Citrus clementina HOM05D000029 ORTHO05D002519 3.4e-06 55.5 101 37.6
Haze_11553 Corylus avellana HOM05D000029 ORTHO05D002519 3.4e-06 55.5 101 35.6
CsaV3_3G011300 Cucumis sativus L. HOM05D000029 ORTHO05D002519 3.4e-06 55.5 101 40.6
Thhalv10003549m.g Eutrema salsugineum HOM05D000029 ORTHO05D002519 3.4e-06 55.5 102 39.2
Glyma.08G357400 Glycine max HOM05D000029 ORTHO05D002519 3.4e-06 55.5 105 36.2
Psat3g142120 Pisum sativum HOM05D000029 ORTHO05D002519 3.4e-06 55.5 106 34.9
Sp2g19310 Schrenkiella parvula HOM05D000029 ORTHO05D002519 3.4e-06 55.5 102 39.2
Thecc.01G230300 Theobroma cacao HOM05D000029 ORTHO05D002519 3.4e-06 55.5 104 40.4
Atru.chr4.1795 Acer truncatum HOM05D000029 ORTHO05D002519 4.5e-06 55.1 101 39.6
Aa31sc90G10 Aethionema arabicum HOM05D000029 ORTHO05D002519 4.5e-06 55.1 104 34.6
ATR0088G041 Amborella trichopoda HOM05D000029 ORTHO05D002519 4.5e-06 55.1 96 41.7
AT5G48940 Arabidopsis thaliana HOM05D000029 ORTHO05D002519 4.5e-06 55.1 100 38.0
SalBow6G3657 Salvia bowleyana HOM05D000029 ORTHO05D002519 4.5e-06 55.1 96 37.5
ATR1136G182 Amborella trichopoda HOM05D000029 ORTHO05D002519 5.8e-06 54.7 92 41.3
Cc03_g07210 Coffea canephora HOM05D000029 ORTHO05D002519 5.8e-06 54.7 101 38.6
MELO3C006339.2 Cucumis melo HOM05D000029 ORTHO05D002519 5.8e-06 54.7 101 40.6
Manes.03G152800 Manihot esculenta HOM05D000029 ORTHO05D002519 5.8e-06 54.7 101 37.6
QL06p023156 Quercus lobata HOM05D000029 ORTHO05D002519 5.8e-06 54.7 101 34.7
Rhsim13G0042500 Rhododendron simsii HOM05D000029 ORTHO05D002519 5.8e-06 54.7 100 38.0
RcHm_v2.0_Chr6g0285351 Rosa chinensis HOM05D000029 ORTHO05D002519 5.8e-06 54.7 98 38.8
TWI73G1297 Tripterygium wilfordii HOM05D000029 ORTHO05D002519 5.8e-06 54.7 101 38.6
VMungo1383G1625 Vigna mungo HOM05D000029 ORTHO05D002519 5.8e-06 54.7 105 37.1
Atru.chr5.1937 Acer truncatum HOM05D000029 ORTHO05D002519 7.6e-06 54.3 104 38.5
AL8G22150 Arabidopsis lyrata HOM05D000029 ORTHO05D002519 7.6e-06 54.3 102 37.3
MELO3C023088.2 Cucumis melo HOM05D000029 ORTHO05D002519 7.6e-06 54.3 101 37.6
Duzib093G2103 Durio zibethinus HOM05D000029 ORTHO05D002519 7.6e-06 54.3 126 34.9
Thhalv10002381m.g Eutrema salsugineum HOM05D000029 ORTHO05D002519 7.6e-06 54.3 99 37.4
Lsat_1_v5_gn_0_4801 Lactuca sativa HOM05D000029 ORTHO05D002519 7.6e-06 54.3 101 38.6
Lj1g0014368 Lotus japonicus HOM05D000029 ORTHO05D002519 7.6e-06 54.3 105 36.2
MBI10_g09182_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D002519 7.6e-06 54.3 98 38.8
QL09p044335 Quercus lobata HOM05D000029 ORTHO05D002519 7.6e-06 54.3 105 38.1
Sed0004078 Sechium edule HOM05D000029 ORTHO05D002519 7.6e-06 54.3 101 39.6
AL3G38940 Arabidopsis lyrata HOM05D000029 ORTHO05D002519 1.0e-05 53.9 99 39.4
AT3G24240 Arabidopsis thaliana HOM05D000029 ORTHO05D002519 1.0e-05 53.9 99 39.4
BcaB06g26557 Brassica carinata HOM05D000029 ORTHO05D002519 1.0e-05 53.9 111 36.0
BcaC06g35592 Brassica carinata HOM05D000029 ORTHO05D002519 1.0e-05 53.9 111 36.0
A07p08460 Brassica napus HOM05D000029 ORTHO05D002519 1.0e-05 53.9 111 36.0
C07p13180 Brassica napus HOM05D000029 ORTHO05D002519 1.0e-05 53.9 111 36.0
BolC7t41811H Brassica oleracea HOM05D000029 ORTHO05D002519 1.0e-05 53.9 111 36.0
Carub.0003s2425 Capsella rubella HOM05D000029 ORTHO05D002519 1.0e-05 53.9 99 39.4
Carub.0008s0865 Capsella rubella HOM05D000029 ORTHO05D002519 1.0e-05 53.9 102 37.3
AUR62035311 Chenopodium quinoa HOM05D000029 ORTHO05D002519 1.0e-05 53.9 100 37.0
Migut.N02253 Erythranthe guttata HOM05D000029 ORTHO05D002519 1.0e-05 53.9 96 38.5
Manes.15G048900 Manihot esculenta HOM05D000029 ORTHO05D002519 1.0e-05 53.9 103 36.9
Nitab4.5_0000813g0010 Nicotiana tabacum HOM05D000029 ORTHO05D002519 1.0e-05 53.9 105 39.0
Potri.003G175700 Populus trichocarpa HOM05D000029 ORTHO05D002519 1.0e-05 53.9 101 38.6


User provided reference genes

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