Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 2.4e-303 1044.6 509 100.0
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 1.8e-202 709.5 374 90.1
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 2.8e-187 659.1 374 83.4
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 6.5e-184 647.9 380 81.3
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 1.7e-176 623.2 378 78.3
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 7.2e-175 617.8 379 76.8
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 6.1e-174 614.8 377 76.7
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 8.0e-174 614.4 380 76.1
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 1.5e-172 610.1 379 76.0
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.5e-172 610.1 378 74.6
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 3.3e-172 609.0 379 75.7
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 8.2e-171 604.4 378 74.6
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 4.1e-170 602.1 380 73.9
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.2e-169 600.5 381 75.1
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 2.0e-169 599.7 376 74.2
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 3.5e-169 599.0 379 74.9
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 5.9e-169 598.2 378 75.7
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 5.9e-169 598.2 379 74.9
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.0e-168 597.4 379 75.7
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 1.3e-168 597.0 379 75.7
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 2.9e-168 595.9 387 73.4
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 2.9e-168 595.9 376 75.0
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 3.8e-168 595.5 375 74.9
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.5e-167 593.6 379 75.2
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 4.2e-167 592.0 376 75.0
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 5.5e-167 591.7 379 75.2
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 7.2e-167 591.3 383 73.9
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 9.4e-167 590.9 379 74.1
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 2.1e-166 589.7 377 72.7
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 2.7e-166 589.3 377 72.7
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 6.1e-166 588.2 379 72.0
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 3.0e-165 585.9 377 72.4
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 6.8e-165 584.7 366 76.5
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 3.4e-164 582.4 414 68.4
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 4.4e-164 582.0 379 71.8
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 9.8e-164 580.9 372 74.2
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 1.7e-163 580.1 379 73.4
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 1.7e-163 580.1 391 70.6
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 3.7e-163 578.9 375 72.3
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 8.3e-163 577.8 375 72.8
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 8.3e-163 577.8 375 72.0
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 8.3e-163 577.8 375 72.0
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 8.3e-163 577.8 375 72.3
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.1e-162 577.4 375 72.0
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 1.4e-162 577.0 375 72.3
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 1.4e-162 577.0 375 72.3
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 1.4e-162 577.0 375 72.3
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 1.8e-162 576.6 375 72.0
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 1.8e-162 576.6 377 72.7
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 1.2e-161 573.9 374 73.3
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 5.9e-161 571.6 374 72.7
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 5.9e-161 571.6 374 72.7
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 7.7e-161 571.2 386 70.7
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 2.3e-160 569.7 377 71.4
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.5e-159 566.2 374 72.2
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 2.5e-159 566.2 379 71.5
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.2e-158 563.9 375 70.1
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 2.8e-158 562.8 368 70.7
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 6.1e-158 561.6 340 76.5
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 8.0e-158 561.2 375 69.9
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 2.3e-157 559.7 378 69.8
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 4.0e-157 558.9 373 69.2
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 5.2e-157 558.5 394 69.8
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 6.8e-157 558.1 367 71.7
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 4.5e-153 545.4 384 71.1
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.3e-152 543.1 358 73.2
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 7.3e-151 538.1 380 68.4
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 6.1e-150 535.0 379 67.8
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.5e-148 530.4 406 63.5
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.6e-148 529.6 366 69.1
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.6e-148 529.6 356 72.2
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 2.2e-147 526.6 379 68.1
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 2.2e-147 526.6 339 74.9
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 1.0e-144 517.7 327 76.5
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 1.0e-144 517.7 379 67.3
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 6.6e-144 515.0 380 66.6
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 1.5e-143 513.8 281 84.3
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.1e-142 510.0 383 66.8
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 3.6e-142 509.2 379 66.5
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 1.1e-141 507.7 378 65.9
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 8.9e-141 504.6 335 71.9
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 1.5e-140 503.8 335 72.2
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 2.0e-140 503.4 388 64.9
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.3e-139 500.7 361 67.6
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 6.4e-139 498.4 379 65.7
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 1.1e-138 497.7 379 63.9
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.4e-138 496.5 323 73.4
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 4.1e-138 495.7 371 65.8
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 7.0e-138 495.0 382 63.6
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 7.0e-138 495.0 375 64.5
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 7.0e-138 495.0 378 64.3
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 9.2e-138 494.6 370 66.5
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 1.2e-137 494.2 369 64.0
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 7.8e-137 491.5 379 63.1
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.3e-136 490.7 375 64.8
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.7e-136 490.3 367 63.8
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 2.5e-135 486.5 352 68.2
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 4.3e-135 485.7 376 64.4
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 7.3e-135 485.0 376 63.8
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 9.5e-135 484.6 376 63.8
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 1.2e-134 484.2 376 64.1
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.6e-134 483.8 376 63.8
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.2e-132 477.6 376 63.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 4.4e-132 475.7 253 86.6
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 7.5e-132 474.9 376 63.0
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 9.2e-130 468.0 381 58.5
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 2.7e-129 466.5 376 61.2
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 2.7e-129 466.5 376 61.2
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 5.1e-128 462.2 257 82.9
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 1.2e-126 457.6 378 60.3
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 9.9e-124 448.0 376 60.6
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.3e-123 447.6 362 58.3
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.2e-121 441.0 390 54.9
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 1.6e-121 440.7 253 77.9
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 5.3e-117 425.6 281 71.9
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 5.3e-117 425.6 372 54.8
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 6.9e-117 425.2 390 53.3
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.2e-113 414.5 380 51.8
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 6.6e-112 408.7 379 57.3
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 1.9e-103 380.6 224 78.6
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.9e-103 380.6 371 53.6
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.0e-96 358.2 303 60.7
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.2e-91 340.5 300 57.0
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 5.0e-83 312.8 542 36.0
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 5.7e-79 299.3 206 71.8
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 7.4e-71 272.3 147 85.7
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.4e-69 267.3 144 86.1
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 4.1e-69 266.5 275 52.4
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 5.3e-69 266.2 214 63.1
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.0e-64 251.9 385 36.4
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 1.6e-57 228.0 220 55.5
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.2e-55 221.9 134 73.9
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 6.3e-54 216.1 146 74.0
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 8.8e-48 195.7 153 65.4
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 5.0e-43 179.9 111 70.3
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 6.3e-38 162.9 139 60.4
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.4e-37 161.8 267 34.1
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.4e-32 145.2 92 67.4
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 2.7e-28 131.0 285 29.5
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 3.5e-20 104.0 59 76.3
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 6.0e-20 103.2 57 77.2
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 3.9e-19 100.5 146 44.5
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.5e-18 98.6 66 69.7
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 8.9e-16 89.4 52 69.2
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 7.1e-13 79.7 86 50.0
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 3.9e-11 73.9 57 59.6
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 6.6e-11 73.2 48 75.0


User provided reference genes

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