Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 9.1e-113 410.2 204 100.0
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 1.8e-84 316.2 161 97.5
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.0e-63 245.7 163 81.6
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 5.6e-62 241.5 161 73.3
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 6.2e-61 238.0 161 71.4
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 2.0e-59 233.0 153 73.9
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 2.9e-58 229.2 157 73.2
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 1.9e-57 226.5 153 71.2
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 7.1e-57 224.6 155 69.7
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 7.1e-57 224.6 155 69.7
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 7.9e-56 221.1 154 68.8
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 1.0e-55 220.7 150 70.7
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.8e-55 219.9 150 70.7
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 1.1e-54 217.2 156 66.7
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 4.3e-54 215.3 159 66.7
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 1.1e-52 210.7 156 66.7
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.8e-52 209.9 157 65.6
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 1.8e-52 209.9 153 62.7
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 6.9e-52 208.0 154 66.9
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 9.0e-52 207.6 153 63.4
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 9.0e-52 207.6 157 64.3
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 1.2e-51 207.2 158 64.6
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 1.5e-51 206.8 157 65.0
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 4.5e-51 205.3 153 62.7
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 7.6e-51 204.5 156 63.5
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.7e-50 203.4 159 62.9
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 2.2e-50 203.0 153 64.7
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 4.9e-50 201.8 155 64.5
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 1.1e-49 200.7 157 62.4
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.1e-49 200.7 159 60.4
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 2.5e-49 199.5 152 65.8
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 2.5e-49 199.5 151 64.2
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 5.5e-49 198.4 152 65.1
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 7.1e-49 198.0 155 65.8
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 9.3e-49 197.6 157 62.4
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 1.2e-48 197.2 153 62.7
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 3.5e-48 195.7 155 63.2
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 7.9e-48 194.5 153 62.1
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 1.0e-47 194.1 155 62.6
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 1.0e-47 194.1 155 60.0
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 6.7e-47 191.4 153 59.5
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 8.7e-47 191.0 157 59.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.9e-46 189.9 153 59.5
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.3e-46 188.7 155 60.6
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 5.7e-46 188.3 153 59.5
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 7.4e-46 188.0 158 60.8
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 7.4e-46 188.0 159 59.1
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 1.3e-45 187.2 154 56.5
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.6e-45 186.8 157 59.9
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 2.1e-45 186.4 163 57.1
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 2.1e-45 186.4 153 60.8
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 2.8e-45 186.0 151 60.9
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 4.8e-45 185.3 153 56.9
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 6.3e-45 184.9 152 58.6
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.2e-45 184.5 153 63.4
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 8.2e-45 184.5 160 58.1
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 8.2e-45 184.5 152 58.6
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 1.4e-44 183.7 153 59.5
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 1.8e-44 183.3 159 57.9
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.4e-44 183.0 153 58.8
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 5.3e-44 181.8 160 54.4
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 6.9e-44 181.4 152 60.5
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 9.0e-44 181.0 160 58.1
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 2.6e-43 179.5 157 58.0
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 7.6e-43 177.9 155 55.5
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 1.0e-42 177.6 160 52.5
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 1.3e-42 177.2 155 54.2
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 2.9e-42 176.0 152 56.6
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 2.9e-42 176.0 157 57.3
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 6.5e-42 174.9 150 57.3
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 8.5e-42 174.5 153 56.9
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 1.9e-41 173.3 155 52.9
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 3.2e-41 172.6 163 54.6
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 4.2e-41 172.2 145 56.6
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 7.2e-41 171.4 155 54.8
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.6e-40 170.2 156 55.8
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 1.6e-40 170.2 157 55.4
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 2.1e-40 169.9 148 54.7
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 2.1e-40 169.9 156 54.5
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 2.7e-40 169.5 149 55.0
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 3.6e-40 169.1 152 53.3
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 1.0e-39 167.5 156 54.5
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.3e-39 167.2 152 52.0
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 1.1e-38 164.1 118 64.4
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 4.3e-38 162.2 150 51.3
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 4.3e-38 162.2 150 51.3
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 5.7e-38 161.8 145 55.2
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 9.7e-38 161.0 155 54.2
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.6e-37 160.2 140 55.0
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 2.2e-37 159.8 150 50.0
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 2.8e-37 159.5 150 50.7
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 2.8e-37 159.5 150 50.7
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 3.1e-36 156.0 159 50.3
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 9.0e-36 154.5 154 51.3
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 9.0e-36 154.5 155 50.3
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 1.0e-34 151.0 163 42.9
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 1.0e-34 151.0 151 53.0
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 3.8e-34 149.1 155 46.5
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.1e-33 147.5 154 46.8
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 5.5e-33 145.2 152 49.3
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 7.2e-33 144.8 126 59.5
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.6e-32 142.1 157 46.5
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 6.7e-31 138.3 159 47.8
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 2.0e-30 136.7 159 47.8
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 1.1e-28 131.0 117 58.1
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 4.1e-28 129.0 155 40.0
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 9.1e-28 127.9 153 42.5
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 7.7e-27 124.8 157 46.5
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 8.5e-26 121.3 147 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 7.2e-25 118.2 157 39.5
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 3.8e-18 95.9 145 42.1
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 1.6e-16 90.5 60 65.0
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 4.5e-11 72.4 154 29.9
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 1.7e-10 70.5 132 34.1
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 1.2e-08 64.3 59 59.3
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 2.7e-08 63.2 110 38.2
CAN.G308.33 Capsicum annuum HOM05D002728 ORTHO05D002874 1.4e-07 60.8 133 28.6
BcaC02g08447 Brassica carinata HOM05D002728 ORTHO05D002874 3.0e-07 59.7 121 30.6
C04p54120 Brassica napus HOM05D002728 ORTHO05D002874 3.0e-07 59.7 121 30.6
BolC4t26964H Brassica oleracea HOM05D002728 ORTHO05D002874 3.0e-07 59.7 121 30.6
BraA04t17490Z Brassica rapa HOM05D002728 ORTHO05D002874 3.0e-07 59.7 121 30.6
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 4.0e-07 59.3 172 26.7
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 5.2e-07 58.9 142 33.8
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 8.8e-07 58.2 116 30.2
BcaB06g27981 Brassica carinata HOM05D002728 ORTHO05D002874 1.2e-06 57.8 121 29.8
A04p18810 Brassica napus HOM05D002728 ORTHO05D002874 1.2e-06 57.8 121 29.8
Thhalv10000282m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 7.5e-06 55.1 121 28.9
Carub.0004s0383 Capsella rubella HOM05D002728 ORTHO05D002874 9.8e-06 54.7 116 28.4


User provided reference genes

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