Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 0.0e+00 2273.4 1159 100.0
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 0.0e+00 1144.4 937 66.6
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 0.0e+00 1102.4 981 62.2
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 3.9e-309 1065.1 921 61.9
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.2e-244 850.9 959 51.3
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 5.9e-233 812.0 921 50.5
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 3.7e-227 792.7 918 51.6
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.6e-225 785.8 944 49.2
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 7.8e-225 785.0 935 49.2
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.3e-224 784.3 935 49.8
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 4.3e-223 779.2 965 49.5
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 8.0e-222 775.0 965 49.3
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 6.8e-221 771.9 922 49.3
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.1e-218 764.6 959 46.9
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.3e-215 753.1 968 46.6
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 8.9e-213 745.0 937 46.6
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.2e-212 744.6 938 45.6
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.2e-212 744.6 947 47.3
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 2.0e-212 743.8 952 44.9
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 4.4e-212 742.7 968 46.3
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 1.3e-211 741.1 982 44.8
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 8.3e-211 738.4 939 45.5
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.6e-209 734.2 1043 44.2
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 8.6e-208 728.4 998 43.4
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 2.5e-207 726.9 965 44.5
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 2.1e-206 723.8 943 44.3
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 2.1e-206 723.8 957 45.4
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 8.1e-206 721.8 943 44.2
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 4.0e-205 719.5 962 45.1
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 5.2e-205 719.2 946 44.6
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.2e-204 718.0 946 46.6
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 6.4e-203 712.2 1032 43.3
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 5.4e-202 709.1 943 44.0
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 9.2e-202 708.4 937 44.6
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.7e-201 706.8 1002 42.7
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 6.0e-201 705.7 957 44.8
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.7e-200 704.1 994 43.0
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 3.0e-200 703.4 948 45.7
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 8.6e-200 701.8 972 45.1
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-198 698.0 939 44.1
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.7e-198 696.0 1007 42.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.4e-197 694.5 972 43.5
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.4e-197 693.7 958 45.1
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.1e-194 684.9 1007 41.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.1e-193 680.6 956 42.7
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.1e-193 680.6 825 48.8
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.8e-193 678.7 1029 40.9
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.0e-192 678.3 965 42.9
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.3e-192 677.9 918 45.9
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 8.1e-190 668.7 967 42.3
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 3.1e-189 666.8 936 43.6
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.2e-188 664.8 952 41.6
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 3.4e-188 663.3 991 42.2
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 9.9e-188 661.8 843 45.4
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 2.9e-187 660.2 968 42.7
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 4.9e-187 659.4 1068 41.6
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 3.2e-186 656.8 994 41.9
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.2e-185 654.8 988 41.0
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 3.5e-185 653.3 991 41.5
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 2.3e-184 650.6 937 42.4
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 7.4e-183 645.6 825 47.4
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 2.4e-181 640.6 960 42.2
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.1e-178 629.0 969 40.6
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.6e-177 627.9 884 43.0
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.6e-177 627.9 990 40.2
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 7.9e-177 625.5 871 43.9
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 2.3e-176 624.0 911 42.5
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 1.5e-175 621.3 890 41.9
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.9e-175 620.9 958 40.3
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 5.3e-173 612.8 892 42.4
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 4.5e-172 609.8 929 41.1
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 2.5e-170 604.0 950 41.8
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 2.1e-169 600.9 896 42.0
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 2.7e-169 600.5 956 40.7
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 5.1e-168 596.3 963 39.6
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 1.5e-167 594.7 783 43.4
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.9e-167 594.3 988 39.4
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.5e-167 594.0 1098 36.7
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 1.1e-165 588.6 979 38.7
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 2.6e-164 583.9 1051 36.9
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.6e-164 583.9 980 37.6
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 2.2e-163 580.9 960 38.9
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.2e-161 575.1 925 40.3
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.7e-161 573.9 964 40.0
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.0e-160 570.5 795 42.9
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 3.3e-159 567.0 740 44.7
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.3e-158 565.1 797 43.4
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.2e-158 564.3 984 38.0
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.5e-156 558.1 1004 37.4
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.6e-153 548.1 931 40.2
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.8e-152 544.7 903 39.8
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 5.1e-152 543.1 1004 37.5
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 6.9e-149 532.7 783 42.8
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 9.1e-149 532.3 918 39.7
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 9.1e-149 532.3 930 38.7
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 2.6e-148 530.8 927 38.6
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.5e-148 530.0 918 38.6
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 1.7e-147 528.1 926 39.0
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 2.2e-147 527.7 921 39.5
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 2.9e-147 527.3 923 39.8
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.1e-146 525.4 926 38.8
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 4.2e-146 523.5 948 37.8
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 7.2e-146 522.7 926 38.6
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.2e-145 521.9 926 38.4
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.0e-143 514.6 945 37.5
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 9.7e-143 512.3 925 39.1
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 5.3e-133 479.9 578 47.4
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.6e-132 478.4 616 45.9
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 7.7e-124 449.5 1002 35.4
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 1.6e-121 441.8 544 46.1
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.8e-120 438.3 576 44.3
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.1e-117 429.1 690 40.0
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 8.6e-115 419.5 1016 32.9
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.0e-107 396.0 736 36.7
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.2e-105 389.0 760 36.6
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.2e-103 382.5 754 36.5
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.9e-101 375.2 1011 30.5
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 7.8e-100 369.8 1043 30.0
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 3.6e-97 360.9 554 39.9
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 8.1e-97 359.8 738 35.9
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 8.1e-97 359.8 762 34.4
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 5.2e-96 357.1 377 53.6
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 6.8e-96 356.7 533 41.1
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.2e-93 347.8 612 37.1
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.5e-90 339.0 520 41.5
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 7.3e-90 336.7 341 53.1
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 5.2e-88 330.5 760 33.9
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.4e-85 322.4 1045 28.6
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-84 319.3 1077 27.2
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 2.3e-83 315.1 469 40.7
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 8.1e-81 306.6 684 35.5
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.3e-78 299.3 327 50.2
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 1.0e-75 289.7 552 36.4
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.0e-67 263.1 602 34.6
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.5e-66 258.5 274 52.2
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.4e-63 248.1 280 51.1
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 2.4e-61 241.9 308 45.8
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.7e-57 228.0 559 31.8
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.4e-55 221.5 269 47.6
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 3.2e-53 214.9 308 44.5
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 1.8e-51 209.1 307 43.6
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 9.7e-50 203.4 252 46.4
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.1e-45 189.9 349 36.7
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.6e-44 184.9 303 39.6
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 1.9e-42 179.1 417 32.9
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.4e-42 177.2 187 53.5
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 1.1e-40 173.3 300 36.7
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.8e-40 172.6 335 38.2
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.0e-38 166.8 232 45.7
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.2e-38 165.6 191 58.6
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.9e-36 157.1 210 44.8
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 9.7e-34 150.2 151 58.9
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.7e-27 127.5 221 41.2
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.7e-27 127.5 178 44.9
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 2.6e-26 125.6 129 51.9
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.7e-25 122.9 197 41.1
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 4.1e-24 118.2 223 37.2
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.1e-21 110.2 183 38.8
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.9e-21 109.4 153 45.1
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 2.5e-21 109.0 94 55.3
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 2.1e-20 105.9 559 24.9
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 3.6e-20 105.1 133 42.9
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 4.7e-20 104.8 171 38.0
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.0e-20 104.0 182 35.2
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 1.5e-18 99.8 107 52.3
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.6e-18 99.0 195 35.4
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.2e-17 94.0 169 35.5
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 7.7e-15 87.4 83 55.4
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 2.2e-14 85.9 76 51.3
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 2.2e-14 85.9 87 49.4
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 2.5e-13 82.4 145 35.2
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.5e-13 82.4 116 43.1
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 4.2e-13 81.6 119 39.5
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 4.7e-12 78.2 72 50.0
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 4.7e-12 78.2 195 34.4
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 3.7e-09 68.6 95 34.7
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 8.3e-09 67.4 76 51.3
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 1.6e-07 63.2 54 55.6
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 7.7e-07 60.8 118 33.9
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 2.9e-06 58.9 87 37.9
MELO3C023092.2 Cucumis melo HOM05D011664 ORTHO05D015088 3.8e-06 58.5 57 47.4


User provided reference genes

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